prot_P-littoralis_Contig167.66.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig167.66.1
Unique Nameprot_P-littoralis_Contig167.66.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length53
Homology
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BLAST of mRNA_P-littoralis_Contig167.66.1 vs. uniprot
Match: D7FZQ8_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ8_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 3.740e-10
Identity = 24/43 (55.81%), Postives = 30/43 (69.77%), Query Frame = 0 
Query:    5 PNADRCHNCADKGRVDLHHHKACAFSLCRRCKRGGHRAVDCTF 47
            P   +C+NCA+K R   HHH  CA+S+C RC RGGHRA  CT+
Sbjct:  366 PGGPQCNNCANKARNRFHHHFTCAYSICTRCGRGGHRAAACTY 408
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig167.66.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZQ8_ECTSI3.740e-1055.81CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 32..46
e-value: 5.7E-4
score: 19.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig167contigP-littoralis_Contig167:338530..338688 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig167.66.1mRNA_P-littoralis_Contig167.66.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig167 338457..338710 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig167.66.1 ID=prot_P-littoralis_Contig167.66.1|Name=mRNA_P-littoralis_Contig167.66.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=53bp
MTSSPNADRCHNCADKGRVDLHHHKACAFSLCRRCKRGGHRAVDCTFPPY
RG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC