mRNA_P-littoralis_Contig167.66.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig167.66.1
Unique NamemRNA_P-littoralis_Contig167.66.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig167.66.1 vs. uniprot
Match: D7FZQ8_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ8_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 1.990e-10
Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 2 
Query:   14 QQAMTSSPNADRCHNCADKGRVDLHHHKACAFSLCRRCKRGGHRAVDCTF 163
            Q+ +   P   +C+NCA+K R   HHH  CA+S+C RC RGGHRA  CT+
Sbjct:  359 QEKLPEIPGGPQCNNCANKARNRFHHHFTCAYSICTRCGRGGHRAAACTY 408
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig167.66.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZQ8_ECTSI1.990e-1050.00CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig167contigP-littoralis_Contig167:338457..338710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size254
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size159
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789807.3080225-UTR-P-littoralis_Contig167:338456..3385291680789807.3080225-UTR-P-littoralis_Contig167:338456..338529Pylaiella littoralis U1_48UTRP-littoralis_Contig167 338457..338529 -
1680789807.3292174-UTR-P-littoralis_Contig167:338688..3387101680789807.3292174-UTR-P-littoralis_Contig167:338688..338710Pylaiella littoralis U1_48UTRP-littoralis_Contig167 338689..338710 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789807.3190272-CDS-P-littoralis_Contig167:338529..3386881680789807.3190272-CDS-P-littoralis_Contig167:338529..338688Pylaiella littoralis U1_48CDSP-littoralis_Contig167 338530..338688 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig167.66.1prot_P-littoralis_Contig167.66.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig167 338530..338688 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig167.66.1

>prot_P-littoralis_Contig167.66.1 ID=prot_P-littoralis_Contig167.66.1|Name=mRNA_P-littoralis_Contig167.66.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=53bp
MTSSPNADRCHNCADKGRVDLHHHKACAFSLCRRCKRGGHRAVDCTFPPY
RG*
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mRNA from alignment at P-littoralis_Contig167:338457..338710-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig167.66.1 ID=mRNA_P-littoralis_Contig167.66.1|Name=mRNA_P-littoralis_Contig167.66.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=254bp|location=Sequence derived from alignment at P-littoralis_Contig167:338457..338710- (Pylaiella littoralis U1_48)
ACTCCGGGAGAACCAGCAGGCCATGACTTCTTCGCCCAACGCCGACCGCT
GCCACAACTGCGCCGATAAGGGCCGCGTAGACCTCCACCACCACAAAGCG
TGTGCTTTCTCCCTGTGCCGCCGCTGCAAACGCGGAGGGCACCGCGCGGT
GGACTGCACCTTTCCCCCTTACCGCGGTTGACCTGGTTGATATAGGATCT
TTGGACGGCCATTCCGGGTGCTGACACTTGCCCGAGCTGAGCGCGTCGTT
TGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig167:338457..338710-

>mRNA_P-littoralis_Contig167.66.1 ID=mRNA_P-littoralis_Contig167.66.1|Name=mRNA_P-littoralis_Contig167.66.1|organism=Pylaiella littoralis U1_48|type=CDS|length=159bp|location=Sequence derived from alignment at P-littoralis_Contig167:338457..338710- (Pylaiella littoralis U1_48)
ATGACTTCTTCGCCCAACGCCGACCGCTGCCACAACTGCGCCGATAAGGG
CCGCGTAGACCTCCACCACCACAAAGCGTGTGCTTTCTCCCTGTGCCGCC
GCTGCAAACGCGGAGGGCACCGCGCGGTGGACTGCACCTTTCCCCCTTAC
CGCGGTTGA
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