prot_P-littoralis_Contig166.96.3 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig166.96.3
Unique Nameprot_P-littoralis_Contig166.96.3
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length195
Homology
BLAST of mRNA_P-littoralis_Contig166.96.3 vs. uniprot
Match: D8LSK7_ECTSI (Non-structural maintenance of chromosomes element 1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSK7_ECTSI)

HSP 1 Score: 295 bits (756), Expect = 7.270e-100
Identity = 146/189 (77.25%), Postives = 166/189 (87.83%), Query Frame = 0
Query:    6 LKEPLQAFAQILMARKVMSHEDAQKALTASYERFGELGFDLEAALSKVDKMLSVMDMAVRSLKASGPDGALYHCFVNKNADEIAKLHGSKLEDWQVQAFRSMLEKFGKSEDEQLVLMDLNELSVHIKTSTVTESGKKEMVKLFADQLVEDFWLSRPGNDVHYRLGVRTYVELPELLKTFDLEVPQVIHH 194
            L+EPLQAFAQILMARKVMS ++AQKAL  SY+RFGEL F L+ A+SKVDKMLS MDM VRS+KASGP+G +YHCF+NK ADEIAKLHGSKLEDWQV+AFR M+EKF KSE++QL L+DL  L+ HIKT    ES K+EM+K FADQLV+DFWL+RPGNDV YRLGVRTYVELPELLKTFDLEVPQVIHH
Sbjct:    4 LREPLQAFAQILMARKVMSQDEAQKALDVSYQRFGELAFTLDEAISKVDKMLSSMDMGVRSMKASGPNGLIYHCFINKTADEIAKLHGSKLEDWQVKAFRGMIEKFAKSEEQQLELLDLQGLTEHIKTKEA-ESTKREMIKSFADQLVDDFWLTRPGNDVFYRLGVRTYVELPELLKTFDLEVPQVIHH 191          
BLAST of mRNA_P-littoralis_Contig166.96.3 vs. uniprot
Match: W7TNJ7_9STRA (Non-structural maintenance of chromosomes element 1 homolog n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNJ7_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.880e-16
Identity = 52/188 (27.66%), Postives = 101/188 (53.72%), Query Frame = 0
Query:    8 EPLQAFAQILMARKVMSHEDAQKALTASYERFG-ELGFDLEAALSKVDKMLSVMDMAVRSLKASGPDGALYHCFVNKNADEIAKLHGSKLEDWQVQAFRSMLEKFGKSEDEQLVLMDLNELSVHIKTSTVTESGKKEMVKLFADQLVEDFWLSRPGNDVHYRLGVRTYVELPELLKTFDLEVPQVIHH 194
            E  QAF Q+LM+RKVM+H  A  AL    E    +   D+++ L+ ++K L   ++ +R +     +    +  VN  +D+++K+H SK++DW+   F+ +++         +   +L  L V I  +  +   K+ ++ L    L  +FWL R  +   + LG RT++EL + ++  ++E+PQV+++
Sbjct:   14 EARQAFLQLLMSRKVMTHSQAANALAMISEELNVQDQLDVKSCLANLNKELQNCNLQIRGMVHQDSEA---YAVVNVLSDDVSKMHASKMKDWEKAYFKEVIKAICGRGGNFVEDDELTALRVPIGGTAASVREKRSVLSL----LSAEFWLQRDKHG-RFALGPRTFLELDDFVRAHEMEMPQVLYY 193          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig166.96.3 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSK7_ECTSI7.270e-10077.25Non-structural maintenance of chromosomes element ... [more]
W7TNJ7_9STRA1.880e-1627.66Non-structural maintenance of chromosomes element ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 86..185
e-value: 1.5E-7
score: 33.5
IPR011513Non-structural maintenance of chromosomes element 1PFAMPF07574SMC_Nse1coord: 11..177
e-value: 5.7E-10
score: 39.4
IPR011513Non-structural maintenance of chromosomes element 1PANTHERPTHR20973NON-SMC ELEMENT 1-RELATEDcoord: 11..187
NoneNo IPR availableGENE3D3.90.1150.220coord: 6..83
e-value: 1.4E-6
score: 30.4
NoneNo IPR availablePANTHERPTHR20973:SF0NON-STRUCTURAL MAINTENANCE OF CHROMOSOMES ELEMENT 1 HOMOLOGcoord: 11..187

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig166contigP-littoralis_Contig166:428617..442989 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig166.96.3mRNA_P-littoralis_Contig166.96.3Pylaiella littoralis U1_48mRNAP-littoralis_Contig166 428404..443664 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig166.96.3 ID=prot_P-littoralis_Contig166.96.3|Name=mRNA_P-littoralis_Contig166.96.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=195bp
MTAHVLKEPLQAFAQILMARKVMSHEDAQKALTASYERFGELGFDLEAAL
SKVDKMLSVMDMAVRSLKASGPDGALYHCFVNKNADEIAKLHGSKLEDWQ
VQAFRSMLEKFGKSEDEQLVLMDLNELSVHIKTSTVTESGKKEMVKLFAD
QLVEDFWLSRPGNDVHYRLGVRTYVELPELLKTFDLEVPQVIHH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036388WH-like_DNA-bd_sf
IPR011513Nse1