prot_P-littoralis_Contig151.76.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig151.76.1
Unique Nameprot_P-littoralis_Contig151.76.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length244
Homology
BLAST of mRNA_P-littoralis_Contig151.76.1 vs. uniprot
Match: A0A6H5L2H3_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H3_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.300e-16
Identity = 70/200 (35.00%), Postives = 92/200 (46.00%), Query Frame = 0
Query:    1 MYARTSLRAFVDLREGSDEVIKHVVRVSYKLTATAASHVVVLGAGGVYLCSCLQLLQHGFSCRHVFAVM-QLQGPALPSACCT--FDANWLHPRWRNVRSLQDEKWTASELVPDKHKWTAVGEGPLWDG----------GENLQGAGQLSGGEDDERDSSPKVSEGA--RRKTYADGLATTREMVAEVVDSVSPAVALDI 185
            ++ARTSL A +DL       +   VR  YKLT +   HVVV+G GG YLCSCL+ L+HG  CRH FAV+ +  G           FD N +H RWR      D  WTAS ++         G G  WDG          G      G   G    ER +           R+ +A  +A  +E V E++ +V  A AL+I
Sbjct:  269 VWARTSLEAPLDLVSRVPVHLAAAVR--YKLTPSRPGHVVVVGPGGFYLCSCLKFLRHGLPCRHYFAVLVRFIGGKYGGVLLNHEFDGNSVHTRWRQSPDGSDAPWTASRVLE------GAGHGDGWDGCDHGQDDNFWGPTYDDDGGEGGVHPAERAAKAVADRSGSDHRRVFATLMAKNKENVTEIMRTVPHAKALEI 460          
BLAST of mRNA_P-littoralis_Contig151.76.1 vs. uniprot
Match: A0A6H5L372_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L372_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.810e-15
Identity = 73/207 (35.27%), Postives = 101/207 (48.79%), Query Frame = 0
Query:    1 MYARTSLRAFVDLREGSDEVIKHVVRVSYKLTATAASHVVVLGAGGVYLCSCLQLLQHGFSCRHVFAVM-QLQGPALPSA----CCTFDANWLHPRWRNVRSLQDEKWTASELVPDKHKWTAVGEGPLWDGGENLQGAGQLSGGE--DDERDSSPKVSEGA---------RRKTYADGLATTREMVAEVVDSVSPAVALDIFSAVRE 191
            M+ARTSL AF+DL E  D  I+  V V YK  A   SH+VV G    +LCSCLQLL+ G  CRH FAV+  L G    S       TF+   +H RWR    + D  W+ S ++      ++ G    WDG  N +G  +   G   D+  D       G          +R+ YA  +AT++E+V +++ SV    AL +   V E
Sbjct:  237 MWARTSLSAFLDLIE--DIPIELFVAVRYKRAANRPSHLVVFGLHNFHLCSCLQLLRRGLPCRHYFAVLVNLIGRTGESDEMAFTHTFNGACVHNRWRRREVVNDSPWSISSVL------SSSGHSVGWDG--NDEGRDEKYWGPTCDEAVDGIHPAGPGRAAQDRSASDKRRVYAHLMATSKELVGDIMRSVPLHQALSVQDKVGE 433          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig151.76.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L2H3_9PHAE1.300e-1635.00SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L372_9PHAE1.810e-1535.27SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 227..243
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 208..243
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 138..156
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 128..158
IPR007527Zinc finger, SWIM-typePROSITEPS50966ZF_SWIMcoord: 29..73
score: 9.284911

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig151contigP-littoralis_Contig151:474864..475595 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig151.76.1mRNA_P-littoralis_Contig151.76.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig151 474421..481438 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig151.76.1 ID=prot_P-littoralis_Contig151.76.1|Name=mRNA_P-littoralis_Contig151.76.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=244bp
MYARTSLRAFVDLREGSDEVIKHVVRVSYKLTATAASHVVVLGAGGVYLC
SCLQLLQHGFSCRHVFAVMQLQGPALPSACCTFDANWLHPRWRNVRSLQD
EKWTASELVPDKHKWTAVGEGPLWDGGENLQGAGQLSGGEDDERDSSPKV
SEGARRKTYADGLATTREMVAEVVDSVSPAVALDIFSAVREVADSRLRAE
GVLRVVTPDLTGGSGQGALQNAKPALTKGRKKNKMHKSSTERR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007527Znf_SWIM