prot_P-littoralis_Contig145.100.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig145.100.1
Unique Nameprot_P-littoralis_Contig145.100.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length160
Homology
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BLAST of mRNA_P-littoralis_Contig145.100.1 vs. uniprot
Match: D7FPQ2_ECTSI (Trigger_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPQ2_ECTSI)

HSP 1 Score: 261 bits (668), Expect = 6.170e-87
Identity = 128/158 (81.01%), Postives = 143/158 (90.51%), Query Frame = 0 
Query:    3 KSMRMEVEELEQLNPAIKGKRLEVVDEAQGVWKYEFDIEAPGPRTQSLHHRILREIKNKSDFPGHRKGEIPLRLMPEANKFVIEEIMNECLNTALETYDLVGAKGDGSKADINTDMEEMLKVFKPGKPISFSCTFNAKPKPETDDG-PVEDATPADTA 159
            + MRMEVEELEQLNPAIKGK+LE+VDEA+GVWKYEFDIEAPGPRTQSLHHRILREIKNKSDFPG+RKGEIP RLMPEA K+VIEE+MNE L TAL TY+LVGAKGDGS+ADI  D+E+MLKVFKPGKP+SFSCTF+AKPKPE +DG P +DA   D A
Sbjct:   43 RGMRMEVEELEQLNPAIKGKKLEIVDEAEGVWKYEFDIEAPGPRTQSLHHRILREIKNKSDFPGYRKGEIPPRLMPEATKYVIEEVMNEGLQTALATYNLVGAKGDGSEADIKNDIEDMLKVFKPGKPLSFSCTFDAKPKPEDEDGGPDDDAAAVDAA 200
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BLAST of mRNA_P-littoralis_Contig145.100.1 vs. uniprot
Match: A0A835YVH3_9STRA (Trigger_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH3_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.360e-24
Identity = 49/122 (40.16%), Postives = 77/122 (63.11%), Query Frame = 0 
Query:   19 IKGKRLEVVDEAQGVWKYEFDIEAPGPRTQSLHHRILREIKNKSDFPGHRKGEIPLRLMPEANKFVIEEIMNECLNTALETYDLVGAKGDGSKADINTDMEEMLKVFKPGKPISFSCTFNAK 140
            +K  RLE VDEA G+++YEF+IE  G  TQ++++ I +E++ K+ FPG RKG+IP     +   F +EE +NE L +AL  + L   +G    A++   +E+++  FKPGK +S +   NAK
Sbjct:   57 VKATRLEAVDEAAGIYQYEFEIEIQGDVTQNIYNGIEKELRKKAAFPGFRKGQIPPFARKQVITFSVEEAVNESLISALAAHGLEKLEGKEGNAELTQQVEDLVAAFKPGKTLSINAKVNAK 178
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BLAST of mRNA_P-littoralis_Contig145.100.1 vs. uniprot
Match: A0A6P0JUQ2_9CYAN (Trigger factor n=1 Tax=Kamptonema sp. SIO4C4 TaxID=2607773 RepID=A0A6P0JUQ2_9CYAN)

HSP 1 Score: 62.8 bits (151), Expect = 1.580e-8
Identity = 33/130 (25.38%), Postives = 69/130 (53.08%), Query Frame = 0 
Query:   24 LEVVDEAQGVWKYEFDIEAPGPRTQSLHHRILREIKNKSDFPGHRKGEIPLRLM-----PEANKF-VIEEIMNECLNTALETYDLVGAKGDGSKADINTDMEEMLKVFKPGKPISFSCTFNAKPKPETDD 147
            ++V  E     +   +IE P  +++ ++ ++++E+      PG R+G++P  ++     P   K   +E+++ + L  A+E  ++        K+DIN    E++K FKPG+P++FS + +  P+ E  D
Sbjct:    1 MKVTQETLPASQIALEIEIPADKSKQVYEKVVQELSRSVRLPGFRQGKVPRHILLQRIGPNRVKAEALEQLIQDSLEKAVEQEEIDVLGNYQLKSDIN----ELIKTFKPGEPLTFSASMDVPPQAEVGD 126
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig145.100.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FPQ2_ECTSI6.170e-8781.01Trigger_N domain-containing protein n=2 Tax=Ectoca... [more]
A0A835YVH3_9STRA2.360e-2440.16Trigger_N domain-containing protein n=1 Tax=Tribon... [more]
A0A6P0JUQ2_9CYAN1.580e-825.38Trigger factor n=1 Tax=Kamptonema sp. SIO4C4 TaxID... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008881Trigger factor, ribosome-binding, bacterialPFAMPF05697Trigger_Ncoord: 34..145
e-value: 2.8E-7
score: 30.9
IPR036611Trigger factor ribosome-binding domain superfamilyGENE3D3.30.70.1050coord: 13..144
e-value: 8.3E-9
score: 37.5
IPR036611Trigger factor ribosome-binding domain superfamilySUPERFAMILY102735Trigger factor ribosome-binding domaincoord: 29..146
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 136..159

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig145contigP-littoralis_Contig145:303423..305825 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig145.100.1mRNA_P-littoralis_Contig145.100.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig145 303365..305846 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig145.100.1 ID=prot_P-littoralis_Contig145.100.1|Name=mRNA_P-littoralis_Contig145.100.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=160bp
MKKSMRMEVEELEQLNPAIKGKRLEVVDEAQGVWKYEFDIEAPGPRTQSL
HHRILREIKNKSDFPGHRKGEIPLRLMPEANKFVIEEIMNECLNTALETY
DLVGAKGDGSKADINTDMEEMLKVFKPGKPISFSCTFNAKPKPETDDGPV
EDATPADTA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008881Trigger_fac_ribosome-bd_bac
IPR036611Trigger_fac_ribosome-bd_sf