mRNA_P-littoralis_Contig145.100.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig145.100.1
Unique NamemRNA_P-littoralis_Contig145.100.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig145.100.1 vs. uniprot
Match: D7FPQ2_ECTSI (Trigger_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPQ2_ECTSI)

HSP 1 Score: 270 bits (689), Expect = 1.100e-89
Identity = 133/168 (79.17%), Postives = 149/168 (88.69%), Query Frame = 1 
Query:    1 HSTRWHGM-KKSMRMEVEELEQLNPAIKGKRLEVVDEAQGVWKYEFDIEAPGPRTQSLHHRILREIKNKSDFPGHRKGEIPLRLMPEANKFVIEEIMNECLNTALETYDLVGAKGDGSKADINTDMEEMLKVFKPGKPISFSCTFNAKPKPETDDG-PVEDATPADTA 498
            HSTRW+    + MRMEVEELEQLNPAIKGK+LE+VDEA+GVWKYEFDIEAPGPRTQSLHHRILREIKNKSDFPG+RKGEIP RLMPEA K+VIEE+MNE L TAL TY+LVGAKGDGS+ADI  D+E+MLKVFKPGKP+SFSCTF+AKPKPE +DG P +DA   D A
Sbjct:   33 HSTRWNSCGTRGMRMEVEELEQLNPAIKGKKLEIVDEAEGVWKYEFDIEAPGPRTQSLHHRILREIKNKSDFPGYRKGEIPPRLMPEATKYVIEEVMNEGLQTALATYNLVGAKGDGSEADIKNDIEDMLKVFKPGKPLSFSCTFDAKPKPEDEDGGPDDDAAAVDAA 200
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BLAST of mRNA_P-littoralis_Contig145.100.1 vs. uniprot
Match: A0A835YVH3_9STRA (Trigger_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH3_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.950e-24
Identity = 52/142 (36.62%), Postives = 84/142 (59.15%), Query Frame = 1 
Query:   16 HGMKKSMRMEVEELEQLNPAIKGKRLEVVDEAQGVWKYEFDIEAPGPRTQSLHHRILREIKNKSDFPGHRKGEIPLRLMPEANKFVIEEIMNECLNTALETYDLVGAKGDGSKADINTDMEEMLKVFKPGKPISFSCTFNAK 441
            H ++ +  +  E L      +K  RLE VDEA G+++YEF+IE  G  TQ++++ I +E++ K+ FPG RKG+IP     +   F +EE +NE L +AL  + L   +G    A++   +E+++  FKPGK +S +   NAK
Sbjct:   37 HAVRMTAAVAGEPLAHAMDGVKATRLEAVDEAAGIYQYEFEIEIQGDVTQNIYNGIEKELRKKAAFPGFRKGQIPPFARKQVITFSVEEAVNESLISALAAHGLEKLEGKEGNAELTQQVEDLVAAFKPGKTLSINAKVNAK 178
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BLAST of mRNA_P-littoralis_Contig145.100.1 vs. uniprot
Match: A0A6P0JUQ2_9CYAN (Trigger factor n=1 Tax=Kamptonema sp. SIO4C4 TaxID=2607773 RepID=A0A6P0JUQ2_9CYAN)

HSP 1 Score: 63.5 bits (153), Expect = 1.660e-8
Identity = 33/130 (25.38%), Postives = 69/130 (53.08%), Query Frame = 1 
Query:   91 LEVVDEAQGVWKYEFDIEAPGPRTQSLHHRILREIKNKSDFPGHRKGEIPLRLM-----PEANKF-VIEEIMNECLNTALETYDLVGAKGDGSKADINTDMEEMLKVFKPGKPISFSCTFNAKPKPETDD 462
            ++V  E     +   +IE P  +++ ++ ++++E+      PG R+G++P  ++     P   K   +E+++ + L  A+E  ++        K+DIN    E++K FKPG+P++FS + +  P+ E  D
Sbjct:    1 MKVTQETLPASQIALEIEIPADKSKQVYEKVVQELSRSVRLPGFRQGKVPRHILLQRIGPNRVKAEALEQLIQDSLEKAVEQEEIDVLGNYQLKSDIN----ELIKTFKPGEPLTFSASMDVPPQAEVGD 126
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig145.100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FPQ2_ECTSI1.100e-8979.17Trigger_N domain-containing protein n=2 Tax=Ectoca... [more]
A0A835YVH3_9STRA1.950e-2436.62Trigger_N domain-containing protein n=1 Tax=Tribon... [more]
A0A6P0JUQ2_9CYAN1.660e-825.38Trigger factor n=1 Tax=Kamptonema sp. SIO4C4 TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig145contigP-littoralis_Contig145:303365..305846 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FPQ2
PFAMsTrigger_N
Model size559
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.01e-87
EggNOG OGs2E9TB@1|root,2SG42@2759|Eukaryota
Ec32 ortholog descriptionTrigger factor, ribosome-binding, bacterial
Ec32 orthologEc-20_000920.1
DescriptionBacterial trigger factor protein (TF)
Cds size480
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig145.100.1prot_P-littoralis_Contig145.100.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig145 303423..305825 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789683.0583649-UTR-P-littoralis_Contig145:303364..3034221680789683.0583649-UTR-P-littoralis_Contig145:303364..303422Pylaiella littoralis U1_48UTRP-littoralis_Contig145 303365..303422 -
1680789683.1240044-UTR-P-littoralis_Contig145:305825..3058461680789683.1240044-UTR-P-littoralis_Contig145:305825..305846Pylaiella littoralis U1_48UTRP-littoralis_Contig145 305826..305846 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789683.0719678-CDS-P-littoralis_Contig145:303422..3035331680789683.0719678-CDS-P-littoralis_Contig145:303422..303533Pylaiella littoralis U1_48CDSP-littoralis_Contig145 303423..303533 -
1680789683.08018-CDS-P-littoralis_Contig145:303806..3039291680789683.08018-CDS-P-littoralis_Contig145:303806..303929Pylaiella littoralis U1_48CDSP-littoralis_Contig145 303807..303929 -
1680789683.0915413-CDS-P-littoralis_Contig145:304491..3045241680789683.0915413-CDS-P-littoralis_Contig145:304491..304524Pylaiella littoralis U1_48CDSP-littoralis_Contig145 304492..304524 -
1680789683.1008296-CDS-P-littoralis_Contig145:305178..3053041680789683.1008296-CDS-P-littoralis_Contig145:305178..305304Pylaiella littoralis U1_48CDSP-littoralis_Contig145 305179..305304 -
1680789683.1134598-CDS-P-littoralis_Contig145:305738..3058251680789683.1134598-CDS-P-littoralis_Contig145:305738..305825Pylaiella littoralis U1_48CDSP-littoralis_Contig145 305739..305825 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig145.100.1

>prot_P-littoralis_Contig145.100.1 ID=prot_P-littoralis_Contig145.100.1|Name=mRNA_P-littoralis_Contig145.100.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=160bp
MKKSMRMEVEELEQLNPAIKGKRLEVVDEAQGVWKYEFDIEAPGPRTQSL
HHRILREIKNKSDFPGHRKGEIPLRLMPEANKFVIEEIMNECLNTALETY
DLVGAKGDGSKADINTDMEEMLKVFKPGKPISFSCTFNAKPKPETDDGPV
EDATPADTA*
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mRNA from alignment at P-littoralis_Contig145:303365..305846-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig145.100.1 ID=mRNA_P-littoralis_Contig145.100.1|Name=mRNA_P-littoralis_Contig145.100.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2482bp|location=Sequence derived from alignment at P-littoralis_Contig145:303365..305846- (Pylaiella littoralis U1_48)
CACTCTACGCGATGGCACGGTATGAAGAAGAGTATGCGGATGGAGGTGGA
GGAGCTTGAGCAGCTCAACCCAGCCATCAAGGGCAAGCGACTGGAGGTTG
TCGACGAGGTCTGTTTAATAGCATGGATCATCTGCATATGTTTCAATGCG
GCGAGTCGGGGTGCCATTTCTTCCCGAGCATGCCAATGAAAGGGGCGAAA
GTCTCAAGATTGGTTTTACCCTGGGACGAGTTCAAGCGTCTTAAGACGCG
ACTAACTTTCCTGGTGGATTTTTGGCTTCGAAGAAAAAGTTCCTGTCGTC
GAGAAGAAAATCAGACACACTTCCGTATAGATGCATACAGATTGCGGTGG
GGAAAGTAGTGTAGCTGGAAGAAAAATGGCTCTAACGATCTCGTTTCTAC
CGTCTTTCAAACTTTGCTTTCATTAGCGATTGCGTGTCAACTAGCCCAAC
CAGCCGCAGTAGTACCGGTACGTGCTTGTCCGGATGCATTTGCATTATGA
GTTTCATCACCGTCATAATGTTATACACCGTACGTGCATCAGGCGCAAGG
CGTCTGGAAATACGAGTTCGACATCGAAGCTCCTGGCCCCAGGACGCAGT
CATTGCACCACCGAATCCTCAGAGAGATCAAAAACAAATCCGACTTTCCC
GGCCACAGGAAGGGCGAGGTGATGTACAAACTACAGCCAAGTTAACTTTT
GATTGTTTAGTACGTGGCGTAGAGTCAGGCATACTCGTAAATGCTCGCAT
GCGAGATAATGTCAGAGACGTCATCTTAGGTTTAACCGTACCGGTAGATC
TGAAAGGTCGCACACTCCTCGCACCTTTTGCAGAGAGAAAAAAGCAGAGG
TCGATGTTACGTGCCCTTTTTCAGTGTTGATGGCATTCATCGTGTTGATA
AAAGTGCCACAAAGGATATGATGGTACCAGGGGAAGAGATGGTTCGTGTC
ATGCTCTATTCAATTGAGGGTAATTTTTGAGTGGACGAACCTAGGCTTGG
CGCCATCCAAGTTGCAGGTCTTTGTGGACTTGACGTTGTCCTGAATATGG
CCTTGTCAGGACGTCGGATTCATGCCCATCTTGAGCCTTTGAAATATGTC
CCGTTTGTGTGATTCACTTGCCGTAATGCCGTCTTGTTATACTTCCGTCT
ACTGCCTTCGATATGCGATTGGTGTATTTGCACACCCCTTCCTAAACATT
TCATTGCCCCTCTACCCTACCATATCCCGTGACATACCATAACGTGTTGC
GGCTGTCATGTTGTGCCGGCGCTCGTCTTTTTCCTAATATTTTTGGTGTG
GTGTGGTGTGGTGTGGCGAAAGATCCCTCTTCGACTCATGCCGGAGGCCA
ACAAGGTGGGTCACTTTCCGCTTCGTGGTTCCACGTATTGTGTACGATTG
GTTCGAAATTGATCACGTTCTTGTTTCTGTATTGTTCTTTTGTTGATGAA
TGGTGTCGACTACTGCAGTACCGCGATGTGTGTTCTTCAAGGCGTTTATT
ACACCAGTCTTTCGCTTTCGACGCAGTTGAATACTACTGCAGACGCAGTT
GAATACTACTGCAGACTCATGAGTGGTATCGTCATGTTAATTGCGAAAGA
GCCCCGTTGCTTGTTGTCGTGTGCGGGCGTCTCATTAAAACTCGCCGCCA
GTTGTACAATACTCTACGCGTGTTTACACTGTATTTGCATCGAACCACAG
CGGTGCAGCTCTCCTCGTGTGATGATTCTTTTTGCTCGATGCCCTATTTC
TGACCGTATCGTATTAATTTGCTCCAGGTTTTTTCTCAGCTGGGGCTAGG
GTCGTTTTAACGTTGCTGCAGCAATAACTGTTATTCCGGCTGTTCCCGGA
CTTTTTGTAACTGCCACTTTCTGCTCCGCCTGGCTTTTGCCATTCATACC
TTATGTCGTTTCAACAGTTTGTGATCGAGGAAATCATGAACGAGTGCTTA
AACACAGCTCTGGAGACGTATGACCTGGTTGGAGCAAAGGGAGATGGGAG
CAAGGCCGATATCAACACCGACATGGAAGAGATGCTAAAGGTAATTTACT
CGGCCAGTGATTGAGGCCCTTCACCAAGCATTTCTCTCCTGGCACCGTTG
TCATCCAACACGTTTTCATGCGGGTGTTGTCGTACATTCGGTATTTTCGG
ATATGCCGGAAAGCGTCACATGTACGCGTAGTACTGCTGTGCTTGTTTCA
GGACGTCTCGCTGTGTATGTTATGAGAACAAGCACTGCTAAGGTGAACTT
TTTCCTCTCTCTCTTTTTTCCTCTGATTCTCGTGTCGCTACGGTTGGTGT
TGGTTCTATACAGGTGTTCAAGCCGGGCAAACCCATATCTTTTTCTTGCA
CTTTTAACGCCAAGCCTAAACCTGAGACCGACGATGGCCCAGTGGAGGAT
GCAACACCGGCGGATACCGCGTAGTTTTTGGGTATACAGACGGCGCCACC
ACTGAAGAACCCACTTCTCGAGGAATCGAGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig145:303365..305846-

>mRNA_P-littoralis_Contig145.100.1 ID=mRNA_P-littoralis_Contig145.100.1|Name=mRNA_P-littoralis_Contig145.100.1|organism=Pylaiella littoralis U1_48|type=CDS|length=480bp|location=Sequence derived from alignment at P-littoralis_Contig145:303365..305846- (Pylaiella littoralis U1_48)
ATGAAGAAGAGTATGCGGATGGAGGTGGAGGAGCTTGAGCAGCTCAACCC
AGCCATCAAGGGCAAGCGACTGGAGGTTGTCGACGAGGCGCAAGGCGTCT
GGAAATACGAGTTCGACATCGAAGCTCCTGGCCCCAGGACGCAGTCATTG
CACCACCGAATCCTCAGAGAGATCAAAAACAAATCCGACTTTCCCGGCCA
CAGGAAGGGCGAGATCCCTCTTCGACTCATGCCGGAGGCCAACAAGTTTG
TGATCGAGGAAATCATGAACGAGTGCTTAAACACAGCTCTGGAGACGTAT
GACCTGGTTGGAGCAAAGGGAGATGGGAGCAAGGCCGATATCAACACCGA
CATGGAAGAGATGCTAAAGGTGTTCAAGCCGGGCAAACCCATATCTTTTT
CTTGCACTTTTAACGCCAAGCCTAAACCTGAGACCGACGATGGCCCAGTG
GAGGATGCAACACCGGCGGATACCGCGTAG
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