prot_P-littoralis_Contig106.103.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig106.103.1
Unique Nameprot_P-littoralis_Contig106.103.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length119
Homology
BLAST of mRNA_P-littoralis_Contig106.103.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 8.650e-73
Identity = 113/118 (95.76%), Postives = 117/118 (99.15%), Query Frame = 0
Query:    1 MLSNSAGLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 118
            MLSNSA LSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILA+MVHEEL+N+PYIINDL+GASYTFN
Sbjct:  101 MLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLGASYTFN 218          
BLAST of mRNA_P-littoralis_Contig106.103.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE)

HSP 1 Score: 220 bits (560), Expect = 6.370e-71
Identity = 110/118 (93.22%), Postives = 115/118 (97.46%), Query Frame = 0
Query:    1 MLSNSAGLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 118
            MLSNSA LSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA YTFN
Sbjct:  104 MLSNSADLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 221          
BLAST of mRNA_P-littoralis_Contig106.103.1 vs. uniprot
Match: FCPD_MACPY (Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=FCPD_MACPY)

HSP 1 Score: 215 bits (548), Expect = 1.200e-69
Identity = 107/118 (90.68%), Postives = 113/118 (95.76%), Query Frame = 0
Query:    1 MLSNSAGLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 118
            MLSNSA LSFADMPNGVAALSKIPP GLAQIF F+GFLELAVMKNVEGSFPGDFT GGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GASY FN
Sbjct:   65 MLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 182          
BLAST of mRNA_P-littoralis_Contig106.103.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY)

HSP 1 Score: 216 bits (551), Expect = 1.310e-69
Identity = 108/118 (91.53%), Postives = 114/118 (96.61%), Query Frame = 0
Query:    1 MLSNSAGLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 118
            MLSNSA LSFADMPNGVAALSKIPPAGLAQIFAF+GFLELAVMKNVEGSFPGDFT GGNPF +SWDAMSEETQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDLVGASYTFN
Sbjct:  100 MLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVGASYTFN 217          
BLAST of mRNA_P-littoralis_Contig106.103.1 vs. uniprot
Match: A0A6H5JDS8_9PHAE (LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS8_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 9.520e-69
Identity = 106/118 (89.83%), Postives = 112/118 (94.92%), Query Frame = 0
Query:    1 MLSNSAGLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 118
            MLSNSA LSFADMPNGVAALSKIPPAGLAQIFAF+GFLELAVMKNVEGSFPGDFT GGNPF SSWDAMSEETQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA Y FN
Sbjct:   64 MLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYNFN 181          
BLAST of mRNA_P-littoralis_Contig106.103.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY)

HSP 1 Score: 211 bits (536), Expect = 2.420e-67
Identity = 105/118 (88.98%), Postives = 111/118 (94.07%), Query Frame = 0
Query:    1 MLSNSAGLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 118
            MLSNSA LSFADMPNGVAALSKIPP GLAQIF F+GFLELAVMKNVEGSFPGDFT GGNPFASSWDAMS ETQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GASY FN
Sbjct:   99 MLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 216          
BLAST of mRNA_P-littoralis_Contig106.103.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY)

HSP 1 Score: 210 bits (535), Expect = 2.930e-67
Identity = 106/118 (89.83%), Postives = 109/118 (92.37%), Query Frame = 0
Query:    1 MLSNSAGLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 118
            MLSNSA LSFADMPNGVAALSKIPP GLAQIF F+GFLELAVMKNVEGSFPGDF  GGNPFASSWD+MS ETQ SKRAIELNNGRAAQMGIL MMVHEELSNQPYI NDL+GASYTFN
Sbjct:   94 MLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGGNPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLGASYTFN 211          
BLAST of mRNA_P-littoralis_Contig106.103.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI)

HSP 1 Score: 215 bits (547), Expect = 6.280e-67
Identity = 107/118 (90.68%), Postives = 113/118 (95.76%), Query Frame = 0
Query:    1 MLSNSAGLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 118
            MLSNSA LSFADMPNGVAALSKIPPAGLAQIFAF+GFLELAVMKNVEGSFPGDFT GGNPF SSWDAMSEETQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA YTFN
Sbjct:  260 MLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 377          
BLAST of mRNA_P-littoralis_Contig106.103.1 vs. uniprot
Match: A0A6H5KBS3_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS3_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 1.220e-60
Identity = 97/117 (82.91%), Postives = 105/117 (89.74%), Query Frame = 0
Query:    2 LSNSAGLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 118
            LS  A L+FADMPNGVAA+SKIPP GLAQI AF+GFLEL VMKNVEGSFPGD T GGNPFA+ WDAMSEET+ SKRAIELNNGRAAQMGILAMM+HEE+SNQPYIINDL+ A YTFN
Sbjct:   90 LSYDAKLTFADMPNGVAAISKIPPLGLAQIVAFIGFLELNVMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 206          
BLAST of mRNA_P-littoralis_Contig106.103.1 vs. uniprot
Match: D8LJH9_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH9_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 1.070e-56
Identity = 88/106 (83.02%), Postives = 95/106 (89.62%), Query Frame = 0
Query:   13 MPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 118
            MPNGVAA+SKIPP GLAQI AF+GFLEL VMKNVEGSFPGD T GGNPF + WD MSEET+ SKRAIELNNGRAAQMGILAMM+HEE+SNQPYIINDL+ A YTFN
Sbjct:    1 MPNGVAAISKIPPLGLAQIVAFIGFLELNVMKNVEGSFPGDMTIGGNPFGAQWDKMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 106          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig106.103.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCX6_9PHAE8.650e-7395.76LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepI... [more]
A0A6H5JHT6_9PHAE6.370e-7193.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
FCPD_MACPY1.200e-6990.68Fucoxanthin-chlorophyll a-c binding protein D, chl... [more]
FCPB_MACPY1.310e-6991.53Fucoxanthin-chlorophyll a-c binding protein B, chl... [more]
A0A6H5JDS8_9PHAE9.520e-6989.83LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
FCPC_MACPY2.420e-6788.98Fucoxanthin-chlorophyll a-c binding protein C, chl... [more]
FCPF_MACPY2.930e-6789.83Fucoxanthin-chlorophyll a-c binding protein F, chl... [more]
D8LNK6_ECTSI6.280e-6790.68Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5KBS3_9PHAE1.220e-6082.91LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LJH9_ECTSI1.070e-5683.02Light harvesting complex protein n=1 Tax=Ectocarpu... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.3460.10Chlorophyll a/b binding protein domaincoord: 2..114
e-value: 1.1E-11
score: 46.9
NoneNo IPR availablePANTHERPTHR21649:SF89CHLOROPHYLL A-B BINDING PROTEIN 6, CHLOROPLASTICcoord: 10..103
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 6..108
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 9..98
e-value: 2.6E-13
score: 50.8
IPR001344Chlorophyll A-B binding protein, plant and chromistaPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 10..103

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig106contigP-littoralis_Contig106:429509..429865 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig106.103.1mRNA_P-littoralis_Contig106.103.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig106 429502..430464 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig106.103.1 ID=prot_P-littoralis_Contig106.103.1|Name=mRNA_P-littoralis_Contig106.103.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=119bp
MLSNSAGLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSF
PGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEEL
SNQPYIINDLVGASYTFN*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022796Chloroa_b-bind
IPR001344Chloro_AB-bd_pln