mRNA_P-littoralis_Contig106.103.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig106.103.1
Unique NamemRNA_P-littoralis_Contig106.103.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig106.103.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE)

HSP 1 Score: 229 bits (583), Expect = 3.190e-71
Identity = 115/120 (95.83%), Postives = 119/120 (99.17%), Query Frame = 2 
Query:    2 PGMLSNSAGLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 361
            PGMLSNSA LSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILA+MVHEEL+N+PYIINDL+GASYTFN
Sbjct:   99 PGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLGASYTFN 218
[Close]
BLAST of mRNA_P-littoralis_Contig106.103.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 2.280e-69
Identity = 112/120 (93.33%), Postives = 117/120 (97.50%), Query Frame = 2 
Query:    2 PGMLSNSAGLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 361
            PGMLSNSA LSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA YTFN
Sbjct:  102 PGMLSNSADLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 221
[Close]
BLAST of mRNA_P-littoralis_Contig106.103.1 vs. uniprot
Match: FCPD_MACPY (Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=FCPD_MACPY)

HSP 1 Score: 219 bits (559), Expect = 4.140e-68
Identity = 109/120 (90.83%), Postives = 115/120 (95.83%), Query Frame = 2 
Query:    2 PGMLSNSAGLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 361
            PGMLSNSA LSFADMPNGVAALSKIPP GLAQIF F+GFLELAVMKNVEGSFPGDFT GGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GASY FN
Sbjct:   63 PGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 182
[Close]
BLAST of mRNA_P-littoralis_Contig106.103.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY)

HSP 1 Score: 221 bits (562), Expect = 4.570e-68
Identity = 110/120 (91.67%), Postives = 116/120 (96.67%), Query Frame = 2 
Query:    2 PGMLSNSAGLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 361
            PGMLSNSA LSFADMPNGVAALSKIPPAGLAQIFAF+GFLELAVMKNVEGSFPGDFT GGNPF +SWDAMSEETQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDLVGASYTFN
Sbjct:   98 PGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVGASYTFN 217
[Close]
BLAST of mRNA_P-littoralis_Contig106.103.1 vs. uniprot
Match: A0A6H5JDS8_9PHAE (LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS8_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 3.230e-67
Identity = 108/120 (90.00%), Postives = 114/120 (95.00%), Query Frame = 2 
Query:    2 PGMLSNSAGLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 361
            PGMLSNSA LSFADMPNGVAALSKIPPAGLAQIFAF+GFLELAVMKNVEGSFPGDFT GGNPF SSWDAMSEETQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA Y FN
Sbjct:   62 PGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYNFN 181
[Close]
BLAST of mRNA_P-littoralis_Contig106.103.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY)

HSP 1 Score: 215 bits (547), Expect = 8.110e-66
Identity = 107/120 (89.17%), Postives = 113/120 (94.17%), Query Frame = 2 
Query:    2 PGMLSNSAGLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 361
            PGMLSNSA LSFADMPNGVAALSKIPP GLAQIF F+GFLELAVMKNVEGSFPGDFT GGNPFASSWDAMS ETQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GASY FN
Sbjct:   97 PGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 216
[Close]
BLAST of mRNA_P-littoralis_Contig106.103.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY)

HSP 1 Score: 214 bits (546), Expect = 9.770e-66
Identity = 108/120 (90.00%), Postives = 111/120 (92.50%), Query Frame = 2 
Query:    2 PGMLSNSAGLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 361
            PGMLSNSA LSFADMPNGVAALSKIPP GLAQIF F+GFLELAVMKNVEGSFPGDF  GGNPFASSWD+MS ETQ SKRAIELNNGRAAQMGIL MMVHEELSNQPYI NDL+GASYTFN
Sbjct:   92 PGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGGNPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLGASYTFN 211
[Close]
BLAST of mRNA_P-littoralis_Contig106.103.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI)

HSP 1 Score: 219 bits (558), Expect = 2.250e-65
Identity = 109/120 (90.83%), Postives = 115/120 (95.83%), Query Frame = 2 
Query:    2 PGMLSNSAGLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 361
            PGMLSNSA LSFADMPNGVAALSKIPPAGLAQIFAF+GFLELAVMKNVEGSFPGDFT GGNPF SSWDAMSEETQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA YTFN
Sbjct:  258 PGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 377
[Close]
BLAST of mRNA_P-littoralis_Contig106.103.1 vs. uniprot
Match: A0A6H5KBS3_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS3_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 5.010e-59
Identity = 99/120 (82.50%), Postives = 107/120 (89.17%), Query Frame = 2 
Query:    2 PGMLSNSAGLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 361
            PG LS  A L+FADMPNGVAA+SKIPP GLAQI AF+GFLEL VMKNVEGSFPGD T GGNPFA+ WDAMSEET+ SKRAIELNNGRAAQMGILAMM+HEE+SNQPYIINDL+ A YTFN
Sbjct:   87 PGYLSYDAKLTFADMPNGVAAISKIPPLGLAQIVAFIGFLELNVMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 206
[Close]
BLAST of mRNA_P-littoralis_Contig106.103.1 vs. uniprot
Match: D8LJH9_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH9_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 1.720e-53
Identity = 88/106 (83.02%), Postives = 95/106 (89.62%), Query Frame = 2 
Query:   44 MPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 361
            MPNGVAA+SKIPP GLAQI AF+GFLEL VMKNVEGSFPGD T GGNPF + WD MSEET+ SKRAIELNNGRAAQMGILAMM+HEE+SNQPYIINDL+ A YTFN
Sbjct:    1 MPNGVAAISKIPPLGLAQIVAFIGFLELNVMKNVEGSFPGDMTIGGNPFGAQWDKMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 106
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig106.103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCX6_9PHAE3.190e-7195.83LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepI... [more]
A0A6H5JHT6_9PHAE2.280e-6993.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
FCPD_MACPY4.140e-6890.83Fucoxanthin-chlorophyll a-c binding protein D, chl... [more]
FCPB_MACPY4.570e-6891.67Fucoxanthin-chlorophyll a-c binding protein B, chl... [more]
A0A6H5JDS8_9PHAE3.230e-6790.00LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
FCPC_MACPY8.110e-6689.17Fucoxanthin-chlorophyll a-c binding protein C, chl... [more]
FCPF_MACPY9.770e-6690.00Fucoxanthin-chlorophyll a-c binding protein F, chl... [more]
D8LNK6_ECTSI2.250e-6590.83Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5KBS3_9PHAE5.010e-5982.50LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LJH9_ECTSI1.720e-5383.02Light harvesting complex protein n=1 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig106contigP-littoralis_Contig106:429502..430464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G1R7
PFAMsChloroa_b-bind
Model size963
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.4e-72
EggNOG OGs2CDPH@1|root,2S3EU@2759|Eukaryota
DescriptionChlorophyll A-B binding protein
Cds size357
COG categoryU
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789393.805599-UTR-P-littoralis_Contig106:429501..4295081680789393.805599-UTR-P-littoralis_Contig106:429501..429508Pylaiella littoralis U1_48UTRP-littoralis_Contig106 429502..429508 +
1680789393.8234158-UTR-P-littoralis_Contig106:429865..4304641680789393.8234158-UTR-P-littoralis_Contig106:429865..430464Pylaiella littoralis U1_48UTRP-littoralis_Contig106 429866..430464 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789393.8148763-CDS-P-littoralis_Contig106:429508..4298651680789393.8148763-CDS-P-littoralis_Contig106:429508..429865Pylaiella littoralis U1_48CDSP-littoralis_Contig106 429509..429865 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig106.103.1prot_P-littoralis_Contig106.103.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig106 429509..429865 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig106.103.1

>prot_P-littoralis_Contig106.103.1 ID=prot_P-littoralis_Contig106.103.1|Name=mRNA_P-littoralis_Contig106.103.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=119bp
MLSNSAGLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSF
PGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEEL
SNQPYIINDLVGASYTFN*
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mRNA from alignment at P-littoralis_Contig106:429502..430464+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig106.103.1 ID=mRNA_P-littoralis_Contig106.103.1|Name=mRNA_P-littoralis_Contig106.103.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=963bp|location=Sequence derived from alignment at P-littoralis_Contig106:429502..430464+ (Pylaiella littoralis U1_48)
GCCCGGCATGCTCTCCAACTCGGCCGGGCTGTCGTTCGCTGACATGCCCA
ACGGCGTGGCTGCCCTCTCGAAGATCCCCCCGGCTGGCCTCGCCCAGATC
TTCGCGTTCGTCGGCTTCCTTGAGCTGGCCGTGATGAAGAACGTTGAGGG
CTCCTTCCCCGGAGACTTTACGAACGGTGGAAACCCGTTCGCTTCCTCGT
GGGACGCCATGTCTGAGGAGACCCAGGAGTCCAAGCGCGCGATCGAGCTC
AACAACGGGCGCGCCGCACAGATGGGCATCCTCGCCATGATGGTGCACGA
GGAGCTCTCCAACCAGCCCTACATCATCAACGACCTCGTCGGCGCCTCGT
ACACCTTCAACTAAAGCTATCCGGAGTTATTATTTTCTCTCGGGTTATCT
GTAAACAATTTTGTTTTTTTGCGAGTTTTGTCACACGGGATTTGTTTCCA
ACCGTTCCGGCCAGCCCTGTTTCACGCTGCATGCTTACATTTGCCTTTTT
TAAAGTAATGCACTGAGTAAATCGGTGATCGTTGTTATTCTTCAATCGCC
GTCATCAGGGATTTGTAAATGTACACGGAAACGGGTCTGCCGGGGAGGGT
CTTGTTTGGGTGCAGGGCGTTTAGTCTGTCGAAAGACTAGTTACTGAAAG
GCGCATTCCAATGCACGTGTCACTTGGTCGTGTTTTGACCTTTTTCAACC
ATTTTTGTAGGAAGCACTCCCGAGATTTGTTAGATTAGACTAGAGGTTTC
TTTTTGGTGGTTGATGGGACAGGTGTTGCTCAGGCTTCGTTGAGTTTCGT
TGACCTTTTCTGCCCATGCTGCTTGGCGGTGTTGTCGATGACGGAACGTC
GTTGAGCCCCCCTCCCTCTTGGATAACGATGATTTTGACTTCAAAATACA
TGGTTTACCCCATCACCACGTTGTGTCTCTCGGCCAATGCATATGGTAGG
TTGTAAATCCTTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig106:429502..430464+

>mRNA_P-littoralis_Contig106.103.1 ID=mRNA_P-littoralis_Contig106.103.1|Name=mRNA_P-littoralis_Contig106.103.1|organism=Pylaiella littoralis U1_48|type=CDS|length=357bp|location=Sequence derived from alignment at P-littoralis_Contig106:429502..430464+ (Pylaiella littoralis U1_48)
ATGCTCTCCAACTCGGCCGGGCTGTCGTTCGCTGACATGCCCAACGGCGT
GGCTGCCCTCTCGAAGATCCCCCCGGCTGGCCTCGCCCAGATCTTCGCGT
TCGTCGGCTTCCTTGAGCTGGCCGTGATGAAGAACGTTGAGGGCTCCTTC
CCCGGAGACTTTACGAACGGTGGAAACCCGTTCGCTTCCTCGTGGGACGC
CATGTCTGAGGAGACCCAGGAGTCCAAGCGCGCGATCGAGCTCAACAACG
GGCGCGCCGCACAGATGGGCATCCTCGCCATGATGGTGCACGAGGAGCTC
TCCAACCAGCCCTACATCATCAACGACCTCGTCGGCGCCTCGTACACCTT
CAACTAA
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