mRNA_P-littoralis_Contig1025.1.1 (mRNA) Pylaiella littoralis U1_48
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1025.1.1 vs. uniprot
Match: A0A6H5KKT3_9PHAE (U1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKT3_9PHAE) HSP 1 Score: 370 bits (949), Expect = 3.170e-122 Identity = 218/233 (93.56%), Postives = 228/233 (97.85%), Query Frame = 1 Query: 313 MSKELGYKQVKNVESRRTWDRDYYEAKAKERIEKGDDYQEKDEAGGPSRRNHKEEFQPAAPGAAGPAGSARAYLKTREKKVDLSSKLGKTQVVTAASTPSQQGGWYCETCKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVTQVKDRLKMHKQREEDRISGALRKPSAEDEFDSRVRESEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPDMAAMMGFGGFGGGGKK 1011
MSK+LGYKQVKNVESRRTWDRDYYEAKAKERIE+GDDYQEKDE G P+RR+ KEEFQPAAPGAAGPAGSARAYLKTRE+KVDLSSKLGKTQVVTAASTPSQQGGWYCE CKCGLKDSINYLDHINGKKHQRELGYSMRVERSTV+QVKDRLKMHKQREEDRISGAL+KPSAEDEFD+RVRE+EDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDP+MAAMMGFGGFGGG KK
Sbjct: 1 MSKDLGYKQVKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDE-GAPARRSQKEEFQPAAPGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPEMAAMMGFGGFGGGSKK 232
BLAST of mRNA_P-littoralis_Contig1025.1.1 vs. uniprot
Match: A0A835ZCC8_9STRA (U1-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC8_9STRA) HSP 1 Score: 183 bits (465), Expect = 2.570e-50 Identity = 144/231 (62.34%), Postives = 168/231 (72.73%), Query Frame = 1 Query: 316 SKELGYKQVKNVESRRTWDRDYYEAKAKERIEKGDDYQEKDEAGGPSRRNHKEEFQPAAPGAAGPAGSARAYLKTREKKVDLSSKLGKTQVVTAASTPSQQGGWYCETCKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVTQVKDRLKMHKQREED--RISGALRKPSAEDEFDSRVRESEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPDMAAMMGFGGFGGG 1002
S +LG KQV NV RR+WD + YE KAKER+E+GD+ +E A + N KEEFQPA GA GPAGS RAYLK R +KVDL S+L KTQV+T+A+ S QGG++CE CKC LKDSI YLDHINGKKHQR LG+SMRVERS+V VK++L + R ED + SGA RK SA E++ R+ E XXXXXXXXXXXXXXXXXXXXXXXX AAMMGFGGF GG
Sbjct: 7 SDDLGDKQVSNV-VRRSWDVELYEKKAKERLERGDEVEEARPASSKAALN-KEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRK-SAVQEYEERLAEYAAX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMMGFGGFSGG 233
BLAST of mRNA_P-littoralis_Contig1025.1.1 vs. uniprot
Match: A0A7S2WR40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WR40_9STRA) HSP 1 Score: 164 bits (415), Expect = 2.990e-43 Identity = 127/230 (55.22%), Postives = 160/230 (69.57%), Query Frame = 1 Query: 334 KQVKNV--ESRRTWDRDYYEAKAKERIEKGDD-YQEKDEAGGPSRRNHKEEFQPAAPGAAGPAGSARAYLKTREKKVDLSSKLGKTQVVTAASTPSQQGGWYCETCKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVTQVKDRLKMHKQREEDRISGALRKPSAEDEFDSRVRESEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPDMAAMMGFGGFGGGGKKK 1014
++ KNV RRTWD YE KA+ER+ + + E D P R ++EF+ A AAGPAGSARA+L R + + L GKTQ++ + GGWYC+ C+C LKDS NYLDHINGKKHQR+LG+SMRVERSTV QV +R K+ K+R+ED +S A R P+A + ++ R+ +++ EXXXXXXXXXXXXXXXXXXXXXX ME DPD+ A MGFGGFGGG K K
Sbjct: 3 EEKKNVGGAQRRTWDVKEYEKKAQERLAREEGGIVEGDVDDRPVR--DRDEFRRAEDQAAGPAGSARAFLNNRNRALGLEKAAGKTQIIADNGLRQKGGGWYCDVCECLLKDSSNYLDHINGKKHQRKLGFSMRVERSTVGQVSERFKLAKKRKEDEMSVATR-PTAIEAYEQRIAAAQEEEXXXXXXXXXXXXXXXXXXXXXX--MEGMDPDLMAAMGFGGFGGGAKGK 227
BLAST of mRNA_P-littoralis_Contig1025.1.1 vs. uniprot
Match: W7U2Z2_9STRA (Zinc finger matrin-type protein 2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2Z2_9STRA) HSP 1 Score: 154 bits (390), Expect = 1.250e-39 Identity = 103/223 (46.19%), Postives = 134/223 (60.09%), Query Frame = 1 Query: 346 NVESRRTWDRDYYEAKAKERIEK---GDDYQEKDEAGGPSRRNHKEEFQPAAPGAAGPAGSARAYLKTREKKVDLSSKLGKTQVVTAASTPSQQGGWYCETCKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVTQVKDRLKMHKQREEDRISGALRKPSAEDEFDSRVRESEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQ----DPDMAAMMGFGGF 993
NVE RRTWD +++E AKER+EK GD ++K P +EEFQ A GAAGP GS RAYLK RE + L K+GK QVVT +S P QQGG++C+ C+C LKDS+ YLDHINGKKHQ+ LGYSMRVER V +VK+RL K+RE+++ R+ SA D + ++ + E + + DP+MAA+MGFGGF
Sbjct: 17 NVE-RRTWDLEHFEKIAKERLEKEASGDVEKKK-----PGFVRKREEFQAAEAGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERLNALKRREDEKKKAGPRE-SAIDAYQKKLEKDEAIKAQWKEARKEARINVIQRATKEEESTVEEEGGVDPEMAALMGFGGF 232
BLAST of mRNA_P-littoralis_Contig1025.1.1 vs. uniprot
Match: A0A1Z5KJY6_FISSO (U4/U6.U5 tri-snRNP component SNU23 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJY6_FISSO) HSP 1 Score: 150 bits (380), Expect = 8.550e-38 Identity = 125/261 (47.89%), Postives = 158/261 (60.54%), Query Frame = 1 Query: 310 SMSKELGYKQVKNVESRRTWDRDYYEAKAKERIEKGDD--YQEKDEAGGPSRR---------NHKEEFQPAAPGAAGPAGSARAYLKTREKKVDLSSKLGKTQVVTAASTPSQQG-GWYCETCKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVTQVKDRLKM-------HKQREEDRISGALRKPSAEDEFDSRVRESED---------NEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPDMAAMMGFGGFGGGGK 1008
+M+ L YKQV NV SRR WD + YE +AKER + ++ Y E+ G ++KEEFQ A P AAGP GS RA+L+ R++ +DL SK+G +++V+A + + G GW+C+ C C LKDS+ YLDHINGKKHQR+LG++MRVERST QV DRLK K+ D I ++DE R RE + XXXXXXXXXXXXXXXXXX E DP+MAAMMGF GFGGG K
Sbjct: 8 TMASNLNYKQVANV-SRRKWDVESYEQRAKERQAREEEAGYLEETRKKGTDNSTANAKNEDDSNKEEFQAAPPDAAGPEGSKRAFLRARQQAIDLESKVGTSEMVSADNAVVKSGIGWHCKVCDCFLKDSLTYLDHINGKKHQRKLGFTMRVERSTKDQVLDRLKSISQTSKSQKETSLDDIVDLNELVQSKDEALQREREEKXXXXXXXXAMENMRXXXXXXXXXXXXXXXXXXEEVDFEGIDPEMAAMMGFSGFGGGNK 267
BLAST of mRNA_P-littoralis_Contig1025.1.1 vs. uniprot
Match: A0A8J5JCN4_9STRA (zf-C2H2_jaz domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JCN4_9STRA) HSP 1 Score: 142 bits (359), Expect = 2.250e-35 Identity = 108/227 (47.58%), Postives = 138/227 (60.79%), Query Frame = 1 Query: 340 VKNVESRRTWDRDYYEAKAKERIEKGDDYQEKDEAGGPSRRNHKEEFQPAAPGAAGPAGSARAYLKTREKKVDLSSKLGKTQVVTAASTPSQQGGWYCETCKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVTQVKDRLKMHKQREEDRISGALRKPSAEDEFDSRVRESEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPD----MAAMMGFGGFGGGGK 1008
V NV +R+TWDR +YE A+ R E + +E +A ++ KEEFQ A GAAGPAGSARA+LK R K+ L + +G +VV + S+ GG+YCE C+CGLKDS+ YLDHINGKKH R+LGYSMRVERSTV QVK+RL+ ++ +K A +E ++RV+ XXXXXXXX + PD M AMMGFGGFGG K
Sbjct: 16 VANV-ARQTWDRAHYEKLAQLRAEGQLEKEETKKA----IKSSKEEFQSANEGAAGPAGSARAFLKARTAKMSLETSVGTVKVVKSEDL-SKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKNRLQNYE-----------KKLKAAEEEEARVKXXXXXXXXXXXXXXDTLDQDKNDDADKKPEAADEVPDADAEMMAMMGFGGFGGSKK 225
BLAST of mRNA_P-littoralis_Contig1025.1.1 vs. uniprot
Match: W2PLF3_PHYPN (U1-type domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2PLF3_PHYPN) HSP 1 Score: 143 bits (360), Expect = 2.600e-35 Identity = 118/237 (49.79%), Postives = 153/237 (64.56%), Query Frame = 1 Query: 340 VKNVESRRTWDRDYYEAKAKERIEKGDDYQEKDEAGGPSRRNHKEEFQPAAPGAAGPAGSARAYLKTREKKVDLSSKLGKTQVVTAASTPSQQGGWYCETCKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVTQVKDRLKMHKQREEDRISGALRKPSAEDEFDSRVRESEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQ--------------DPDMAAMMGFGGFGGGGK 1008
V NV +R+TWDR +YE A+ R E + +E + ++ KEEFQ A GAAGPAGSARA+LK R K+ L S +G +VV + S+ GG+YCE C+CGLKDS+ YLDHINGKKH R+LGYSMRVERSTV QVK+RL+ +R+ D + +K A ++++ +++ +E+ XXXXXXXXXXXXXXXXXXX D +M AMMGFGGFGG K
Sbjct: 13 VANV-TRQTWDRAHYEKLAQLRAEGKLEKEETKKV----IKSTKEEFQAANEGAAGPAGSARAFLKARTNKMSLESSVGTVKVVKSDDV-SKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKNRLQSASKRKWDPLMA--KKLDAMEDYEKKLKAAEEEXXXXXXXXXXXXXXXXXXXXALEQDKSDDADKKPEAADEALDADAEMMAMMGFGGFGGSKK 241
BLAST of mRNA_P-littoralis_Contig1025.1.1 vs. uniprot
Match: A0A3R7GK79_9STRA (U1-type domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GK79_9STRA) HSP 1 Score: 143 bits (360), Expect = 2.740e-35 Identity = 107/239 (44.77%), Postives = 142/239 (59.41%), Query Frame = 1 Query: 340 VKNVESRRTWDRDYYEAKAKERIEKGDDYQEKDEAGGPSRRNHKEEFQPAAPGAAGPAGSARAYLKTREKKVDLSSKLGKTQVVTAASTPSQQGGWYCETCKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVTQVKDRLKMHKQREEDRISGALRKPSAEDEFDSRVRESEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQ----------------DPDMAAMMGFGGFGGGGK 1008
V NV +R+TWDR++YE AK R E + +E + ++ KEEFQ A AAGPAGSARA+LK R K+ L + +G +VV + S+ GG+YCE C+CGLKDS+ YLDHINGKKH R+LGYSMRVERSTV QVK RL+ +R+ D + +K +++ +V+E+E+ E XXXXXXXX + D +M +MMGFGGFGG K
Sbjct: 13 VANV-ARQTWDREHYEKLAKLRAEGQLEQEETKKV----IKSSKEEFQAADDRAAGPAGSARAFLKARTSKMSLENSVGTVKVVKSDDL-SKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKSRLQSASKRKWDPLM--TKKLDTMADYEKKVKEAEEEEARIKRQKXXXXXXXXLGDQQTSEVKSEKATDKKPEAEDEAVPDADTEMMSMMGFGGFGGSKK 243
BLAST of mRNA_P-littoralis_Contig1025.1.1 vs. uniprot
Match: UPI00145566CC (zinc finger matrin-type protein 2-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI00145566CC) HSP 1 Score: 140 bits (353), Expect = 8.570e-35 Identity = 109/218 (50.00%), Postives = 133/218 (61.01%), Query Frame = 1 Query: 358 RRTWDRDYYEAKAKERIEKGDDYQEKDEAGGPSRRNHKEEFQPAAPGAAGPAGSARAYLKTREKKVDLSSKLGKTQVVTAASTPSQQGGWYCETCKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVTQVKDRLKMHKQREEDRISGALRKPSAEDEFDSRVRESEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPDMAAMMGFGGFGGGGKK 1011
RR WDRD +E AKER++K DD S N ++ +P R LK RE KVDL S+LGK+QV+T + SQ GG+YC C C +KDSIN+LDHINGKKHQR LG SM+VERST+ QVK R +++K++ E+ F+SR++E XXXXXXXXXXXXXXXXX DPDMAAMMGF GFGG KK
Sbjct: 14 RRKWDRDEFEKIAKERLDKEDD---------DSTENERKRNEPPI---------RRELLKQREYKVDLESRLGKSQVITKTTPSSQMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKVERSTLDQVKKRFELNKRKREEXXXXXX--------FESRMQELRXXXXXXXXXXXXXXXXXXXXADDDDLDSGV-DPDMAAMMGFSGFGGAKKK 204
BLAST of mRNA_P-littoralis_Contig1025.1.1 vs. uniprot
Match: A0A4D9DA28_9STRA (U1-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DA28_9STRA) HSP 1 Score: 150 bits (378), Expect = 1.390e-34 Identity = 92/175 (52.57%), Postives = 119/175 (68.00%), Query Frame = 1 Query: 346 NVESRRTWDRDYYEAKAKERIEK---GDDYQEKDEAGGPSRRNHKEEFQPAAPGAAGPAGSARAYLKTREKKVDLSSKLGKTQVVTAASTPSQQGGWYCETCKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVTQVKDRLKMHKQREEDRISGALRKPSAEDEFDSRVRESE 861
NVE RRTWD +++E AKER+EK GD ++K P +EEFQ A GAAGP GS RAYLK RE + L K+GK QVVT +S P QQGG++C+ C+C LKDS+ YLDHINGKKHQ+ LGYSMRVER V +VK+RL K+RE+++ R+ SA D ++ ++ E
Sbjct: 17 NVE-RRTWDLEHFEKIAKERLEKEASGDVEKKK-----PGFVRKREEFQAAETGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERLNALKRREDEKRKAGPRE-SAIDAYEKKLENDE 184 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1025.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1025.1.1 >prot_P-littoralis_Contig1025.1.1 ID=prot_P-littoralis_Contig1025.1.1|Name=mRNA_P-littoralis_Contig1025.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=235bp MSKELGYKQVKNVESRRTWDRDYYEAKAKERIEKGDDYQEKDEAGGPSRRback to top mRNA from alignment at P-littoralis_Contig1025:362..6099- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1025.1.1 ID=mRNA_P-littoralis_Contig1025.1.1|Name=mRNA_P-littoralis_Contig1025.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5738bp|location=Sequence derived from alignment at P-littoralis_Contig1025:362..6099- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1025:362..6099- >mRNA_P-littoralis_Contig1025.1.1 ID=mRNA_P-littoralis_Contig1025.1.1|Name=mRNA_P-littoralis_Contig1025.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=705bp|location=Sequence derived from alignment at P-littoralis_Contig1025:362..6099- (Pylaiella littoralis U1_48)back to top |