prot_P-littoralis_Contig100.157.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig100.157.1
Unique Nameprot_P-littoralis_Contig100.157.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length91
Homology
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BLAST of mRNA_P-littoralis_Contig100.157.1 vs. uniprot
Match: A0A6H5JIT9_9PHAE (Urb2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIT9_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 2.320e-21
Identity = 46/56 (82.14%), Postives = 49/56 (87.50%), Query Frame = 0 
Query:    1 EGFYVAGESLERFRACCRVLGTVLQHYARKVYSCTPPFASLCRSLLRLFFRLVSAP 56
            E F+V  ESL  FRA CRV+GTVLQHYARKVYSCTPPFASLCRSLLRLFFRL +AP
Sbjct: 2241 EAFFVVRESLRCFRATCRVVGTVLQHYARKVYSCTPPFASLCRSLLRLFFRLATAP 2296
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig100.157.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIT9_9PHAE2.320e-2182.14Urb2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018849Nucleolar 27S pre-rRNA processing, Urb2/Npa2, C-terminalPFAMPF10441Urb2coord: 11..75
e-value: 1.6E-7
score: 31.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig100contigP-littoralis_Contig100:567234..567506 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig100.157.1mRNA_P-littoralis_Contig100.157.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig100 567234..567508 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig100.157.1 ID=prot_P-littoralis_Contig100.157.1|Name=mRNA_P-littoralis_Contig100.157.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=91bp
EGFYVAGESLERFRACCRVLGTVLQHYARKVYSCTPPFASLCRSLLRLFF
RLVSAPPLVDDSGTTEASASAEAAEAAASVEGVVGRTVADS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018849Urb2/Npa2_C