mRNA_P-littoralis_Contig100.157.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig100.157.1
Unique NamemRNA_P-littoralis_Contig100.157.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig100.157.1 vs. uniprot
Match: A0A6H5JIT9_9PHAE (Urb2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIT9_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 2.320e-21
Identity = 46/56 (82.14%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:    1 EGFYVAGESLERFRACCRVLGTVLQHYARKVYSCTPPFASLCRSLLRLFFRLVSAP 168
            E F+V  ESL  FRA CRV+GTVLQHYARKVYSCTPPFASLCRSLLRLFFRL +AP
Sbjct: 2241 EAFFVVRESLRCFRATCRVVGTVLQHYARKVYSCTPPFASLCRSLLRLFFRLATAP 2296
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig100.157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIT9_9PHAE2.320e-2182.14Urb2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig100contigP-littoralis_Contig100:567234..567508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size277
Hectar predicted targeting categoryother localisation
Exons1
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789342.7226775-CDS-P-littoralis_Contig100:567233..5675061680789342.7226775-CDS-P-littoralis_Contig100:567233..567506Pylaiella littoralis U1_48CDSP-littoralis_Contig100 567234..567506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig100.157.1prot_P-littoralis_Contig100.157.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig100 567234..567506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig100.157.1

>prot_P-littoralis_Contig100.157.1 ID=prot_P-littoralis_Contig100.157.1|Name=mRNA_P-littoralis_Contig100.157.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=91bp
EGFYVAGESLERFRACCRVLGTVLQHYARKVYSCTPPFASLCRSLLRLFF
RLVSAPPLVDDSGTTEASASAEAAEAAASVEGVVGRTVADS
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mRNA from alignment at P-littoralis_Contig100:567234..567508+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig100.157.1 ID=mRNA_P-littoralis_Contig100.157.1|Name=mRNA_P-littoralis_Contig100.157.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=275bp|location=Sequence derived from alignment at P-littoralis_Contig100:567234..567508+ (Pylaiella littoralis U1_48)
GAAGGCTTTTATGTCGCCGGGGAGAGCCTGGAGCGCTTCCGCGCCTGCTG
CCGCGTGCTCGGGACGGTGCTCCAGCACTACGCGCGCAAGGTGTACTCGT
GCACGCCCCCGTTCGCTTCTCTCTGTCGTTCGCTGCTCCGCCTCTTCTTC
CGGTTGGTATCGGCGCCCCCGCTGGTAGATGACTCTGGAACGACGGAGGC
ATCAGCGTCTGCAGAAGCGGCAGAAGCGGCGGCATCTGTGGAAGGTGTTG
TCGGCAGAACAGTCGCCGATAGTCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig100:567234..567508+

>mRNA_P-littoralis_Contig100.157.1 ID=mRNA_P-littoralis_Contig100.157.1|Name=mRNA_P-littoralis_Contig100.157.1|organism=Pylaiella littoralis U1_48|type=CDS|length=273bp|location=Sequence derived from alignment at P-littoralis_Contig100:567234..567508+ (Pylaiella littoralis U1_48)
GAAGGCTTTTATGTCGCCGGGGAGAGCCTGGAGCGCTTCCGCGCCTGCTG
CCGCGTGCTCGGGACGGTGCTCCAGCACTACGCGCGCAAGGTGTACTCGT
GCACGCCCCCGTTCGCTTCTCTCTGTCGTTCGCTGCTCCGCCTCTTCTTC
CGGTTGGTATCGGCGCCCCCGCTGGTAGATGACTCTGGAACGACGGAGGC
ATCAGCGTCTGCAGAAGCGGCAGAAGCGGCGGCATCTGTGGAAGGTGTTG
TCGGCAGAACAGTCGCCGATAGT
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