mRNA_P-littoralis_Contig989.13.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig989.13.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI) HSP 1 Score: 223 bits (568), Expect = 1.750e-73 Identity = 117/122 (95.90%), Postives = 119/122 (97.54%), Query Frame = 1
Query: 1 MSGKGNGGRGKKSVTRSAKAGLQFPVGRVGRFLKAGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVEK 366
MSGKG GGRGKKS TRSAKAGLQFPVGRVGRFLK GKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTV+K
Sbjct: 1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122
BLAST of mRNA_P-littoralis_Contig989.13.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI) HSP 1 Score: 221 bits (563), Expect = 6.030e-72 Identity = 116/121 (95.87%), Postives = 118/121 (97.52%), Query Frame = 1
Query: 1 MSGKGNGGRGKKSVTRSAKAGLQFPVGRVGRFLKAGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVE 363
MSGKG GGRGKKS TRSAKAGLQFPVGRVGRFLK GKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTV+
Sbjct: 46 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 166
BLAST of mRNA_P-littoralis_Contig989.13.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE) HSP 1 Score: 208 bits (530), Expect = 1.670e-67 Identity = 107/119 (89.92%), Postives = 115/119 (96.64%), Query Frame = 1
Query: 1 MSGKGNGGRGKKSVTRSAKAGLQFPVGRVGRFLKAGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKT 357
MSGKG GGRGKKS ++S+KAGLQFPV R+GR+LK GKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK+
Sbjct: 1 MSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKS 119
BLAST of mRNA_P-littoralis_Contig989.13.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI) HSP 1 Score: 208 bits (530), Expect = 8.570e-67 Identity = 107/119 (89.92%), Postives = 115/119 (96.64%), Query Frame = 1
Query: 1 MSGKGNGGRGKKSVTRSAKAGLQFPVGRVGRFLKAGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKT 357
MSGKG GGRGKKS ++S+KAGLQFPV R+GR+LK GKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK+
Sbjct: 52 MSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKS 170
BLAST of mRNA_P-littoralis_Contig989.13.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI) HSP 1 Score: 205 bits (521), Expect = 2.330e-66 Identity = 105/118 (88.98%), Postives = 112/118 (94.92%), Query Frame = 1
Query: 1 MSGKGNGGRGKKSVTRSAKAGLQFPVGRVGRFLKAGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 354
MSGKG GGRGKK +RSAKAGLQFPVGR+GRF+K GKY+SRVG GAPVY+AAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELN+LLG+ TIASGGVLPNIHAVLLPKK
Sbjct: 1 MSGKGKGGRGKKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_P-littoralis_Contig989.13.1 vs. uniprot
Match: A0A6H5KGY1_9PHAE (Integrase catalytic domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGY1_9PHAE) HSP 1 Score: 220 bits (561), Expect = 3.280e-64 Identity = 116/120 (96.67%), Postives = 117/120 (97.50%), Query Frame = 1
Query: 1 MSGKGNGGRGKKSVTRSAKAGLQFPVGRVGRFLKAGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTV 360
MSGKG GGRGKKS TRSAKAGLQFPVGRVGRFLK GKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTV
Sbjct: 1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTV 120
BLAST of mRNA_P-littoralis_Contig989.13.1 vs. uniprot
Match: A0A836CG77_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG77_9STRA) HSP 1 Score: 197 bits (502), Expect = 2.540e-63 Identity = 104/124 (83.87%), Postives = 112/124 (90.32%), Query Frame = 1
Query: 1 MSGKGNGGRG---KKSVTRSAKAGLQFPVGRVGRFLKAGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVE 363
M+GKG GGRG KKS ++S+KAGLQFPV R+GRFLK G+YA RVGAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHIQLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKKT
Sbjct: 1 MAGKGKGGRGAEAKKSTSKSSKAGLQFPVARLGRFLKVGRYAERVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKKTAS 124
BLAST of mRNA_P-littoralis_Contig989.13.1 vs. uniprot
Match: A0A835ZLE9_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE9_9STRA) HSP 1 Score: 198 bits (503), Expect = 2.560e-63 Identity = 103/121 (85.12%), Postives = 114/121 (94.21%), Query Frame = 1
Query: 7 GKGNGGRG-KKSVTRSAKAGLQFPVGRVGRFLKAGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVEK 366
GKG GGRG KK+V++SAKAGLQFPVGRVGRFLK G+YA RVGAGAPVY+AAV+EYL AEVLEL+GNAARDNKK+RI+PRHIQLAVRNDEELNKLLG+VTIA+GGVLPNIHAVLLPKKT K
Sbjct: 5 GKGKGGRGDKKAVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKKTRSK 125
BLAST of mRNA_P-littoralis_Contig989.13.1 vs. uniprot
Match: A0A7S3CML3_9SPIT (Histone H2A (Fragment) n=1 Tax=Strombidium rassoulzadegani TaxID=1082188 RepID=A0A7S3CML3_9SPIT) HSP 1 Score: 198 bits (503), Expect = 2.920e-63 Identity = 106/123 (86.18%), Postives = 114/123 (92.68%), Query Frame = 1
Query: 1 MSGKGNG-GRGKKSVTRSAKAGLQFPVGRVGRFLKAGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVEK 366
MSGKG G GKK+V+RSAKAGLQFPVGRV R+LK GKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKK RIVPRHIQLAVRNDEEL+KLLG VTIA+GGVLPNIH+VLLPKK+ EK
Sbjct: 19 MSGKGKGRAPGKKAVSRSAKAGLQFPVGRVARYLKKGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGNVTIAAGGVLPNIHSVLLPKKSAEK 141
BLAST of mRNA_P-littoralis_Contig989.13.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA) HSP 1 Score: 196 bits (499), Expect = 5.810e-63 Identity = 103/122 (84.43%), Postives = 113/122 (92.62%), Query Frame = 1
Query: 1 MSGKGNGGRG-KKSVTRSAKAGLQFPVGRVGRFLKAGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVE 363
MSGKG GGRG KKS T SAKAGLQFPVGR+GR+L+ GKYA+R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKK+ +
Sbjct: 1 MSGKGKGGRGGKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig989.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig989.13.1 >prot_P-littoralis_Contig989.13.1 ID=prot_P-littoralis_Contig989.13.1|Name=mRNA_P-littoralis_Contig989.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=123bp MSGKGNGGRGKKSVTRSAKAGLQFPVGRVGRFLKAGKYASRVGAGAPVYLback to top mRNA from alignment at P-littoralis_Contig989:63049..63417- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig989.13.1 ID=mRNA_P-littoralis_Contig989.13.1|Name=mRNA_P-littoralis_Contig989.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=369bp|location=Sequence derived from alignment at P-littoralis_Contig989:63049..63417- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig989:63049..63417- >mRNA_P-littoralis_Contig989.13.1 ID=mRNA_P-littoralis_Contig989.13.1|Name=mRNA_P-littoralis_Contig989.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=369bp|location=Sequence derived from alignment at P-littoralis_Contig989:63049..63417- (Pylaiella littoralis U1_48)back to top |