mRNA_P-littoralis_Contig98.30.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig98.30.1
Unique NamemRNA_P-littoralis_Contig98.30.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig98.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig98contigP-littoralis_Contig98:166269..168553 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog469371.Tbis_2545
PFAMsTPR_16,TPR_2,TPR_4,TPR_8,TPR_9
Model size363
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons3
Evalue0.000152
EggNOG OGsCOG0457@1|root,COG0457@2|Bacteria,2I1N0@201174|Actinobacteria,4DXFE@85010|Pseudonocardiales
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-08_004240.1
DescriptionTetratricopeptide repeat
Cds size363
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791900.2433822-CDS-P-littoralis_Contig98:166268..1664001680791900.2433822-CDS-P-littoralis_Contig98:166268..166400Pylaiella littoralis U1_48CDSP-littoralis_Contig98 166269..166400 -
1680791900.2634091-CDS-P-littoralis_Contig98:167356..1674321680791900.2634091-CDS-P-littoralis_Contig98:167356..167432Pylaiella littoralis U1_48CDSP-littoralis_Contig98 167357..167432 -
1680791900.2768438-CDS-P-littoralis_Contig98:168398..1685531680791900.2768438-CDS-P-littoralis_Contig98:168398..168553Pylaiella littoralis U1_48CDSP-littoralis_Contig98 168399..168553 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig98.30.1prot_P-littoralis_Contig98.30.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig98 166269..168553 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig98.30.1

>prot_P-littoralis_Contig98.30.1 ID=prot_P-littoralis_Contig98.30.1|Name=mRNA_P-littoralis_Contig98.30.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=121bp
SIEQHDSTFWPAYSLRGRLRYKAGNIPGALQDLTVCVQEAPQDRAALKTR
ARLFASRGLWEDASRDLSAGLRVDPNDTDDYSGAVYDFGIVIDRAEVPSA
TDYIRRACAFCCGQVNAITS*
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mRNA from alignment at P-littoralis_Contig98:166269..168553-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig98.30.1 ID=mRNA_P-littoralis_Contig98.30.1|Name=mRNA_P-littoralis_Contig98.30.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2285bp|location=Sequence derived from alignment at P-littoralis_Contig98:166269..168553- (Pylaiella littoralis U1_48)
TCCATCGAGCAGCACGACTCAACCTTCTGGCCGGCTTACTCGTTGCGAGG
GCGGCTGAGGTACAAAGCGGGGAACATTCCTGGAGCCCTGCAAGACCTGA
CGGTGTGCGTGCAAGAGGCGCCGCAAGATCGAGCCGCTCTAAAGACTCGC
GCCAGGTACGATCTATCATGCGCATTGCAGTGGTTGCGCTCAAGGATCCC
GACGTGAGCACTGTGATAGATGTATCTACTGCTGCGAAATCGTGCACCGT
GACACGGTATATAAGACGTTCCTCAGTATAGTATTGTCAGGCGATGACGA
CGATGGACGTGGGCACGTTGATAATCAGTAGTTCGATTTTAACGTGATTC
GAGCATCGCTGGCGTGCGGCATTTTTTCGAGTTATCTTGACGATTCGAAA
CACTTTCGTCGGATTGAAGCTCTGAGAAAAACCTGGTTTCAACTGTTTTG
GCTATGAAGCTTATTTCGATGCTGCGGAAATTTTGTTTCGCGTCGATGTC
CAAGACTCATCCCGGCGTCATGGACGTGGCGTATTTTAAGAGCGAACCAA
CATCGAAGAAGACCAATGATACTGTACCGAGATCCTTGTGTGCGACCAGC
TCATACAAGGAAGGGTGGCGGATATCGAAGCCGTCTACACTTGTCAGTCT
CGTTTGCGTTGACACCGCGGTTTATGATCCACTTCTCTCAGGTCATTTTC
AAAAGGCAAGAGCTGGTTCGAATTTATGAGGTGGATGTCTACTGATGAAA
CATGATGAGAGCAAGCAAAGGCAAAGGCTCACGGCAGTTTTGTCAGCAAC
ATGTCAAGGCAGCAAGCTTGCGATTGTTCTAGAATTACCTCAAAATTCAA
AAGTTTGTAACTTGCCGCTAGTCTTTATCCTTAGCCTTCCTCATCTGCTC
TCGATAACAGTCGGGCTTGACGTGCACAAGAGTGTCCCACGTGGGGCACC
CTGTGCATTGTGGAGTACTTCTCCTTCTCGCACCGTAAATTATTGAGACA
TGGACAACAGCTGAACCAAGTGGACATATTTGCCACCCGATAAGCGCTCA
GAACGAAGGCGGTGGTCTCACCAATTTGCCGTCTTTGTCATATCTGCCTG
CACGATCGACGATTCGAACAGACTGTTTGCTAGTCGAGGACTCTGGGAGG
ATGCCTCTAGAGACCTTTCAGCCGGACTCCGTGTGGATCCCAACGATGTA
AGACATACTCACCAACACAGCGGGTCAGCGCAAGACCACGAGCCGAGCCC
CGACTGTAGTTTGTAGGTGCACATTTATCTGTCGAGTGCCCGTGTATGTT
GCCGAACTTGCACGAAAGCGAAGTGTATCTAGCGGGACGGCAATTATCAG
GTGTGCTTCACCCCGCGTACCCCCGCCCCCCGCGCGCCCCAGCATCACAC
GTCGCTCCCGGAGACCCATAGGCGCAGCGCTCAAAGCTTGTGTCTGTCAC
ATATGCATATGTCGCTGGAATTTCTCTCATTGCTACCCTGTTCACAACCG
ATTGGTGTTTTCCTCGATTATACCGGCCACTTGGGGGTATTCCCTGCCGG
GACGCCGTTCACAACGAAGCAGCTCGAAGGCTATCTCCTCCGCGGAAACG
CCCTGATACACGTGAGGGAGATATCGCGATCGACTGATGACACATGTATG
TTTGTGTTGCCGCGTTTTTGCTCGCTCGTATGATACGGGTACGCAACTAG
TTGCGGTCACGCGAACAAAACTTGTTTGAAATCCGGGATTAAGCTTCTGG
GGAAGTGTCTTTAATTCAAAGGTTTTCTGGGAAACAAGCCGTGCGGTCCC
ATCCACGACGGGGATATTTTTCATCGTTTAGGGTTTGCATGTGTCTTAGA
TGTGACATACGGTATGATTTGAAGATAAGTTGCTAGCTTGTTTCGAGGTT
TCGACGACGGGCTCTTCTTTTCGGGGCGCCTTACGAGAGTCCGGCCAGCG
CCGACGCATGTCGCCGACACGAATTGGATGGTTCATGCCTAAAATCGTGC
TCATGTGCGCGTCTCTATGTGGCGATGATGAGCGTCTGAATGCAAGTCCA
TCCAAACCCGAGCTGTGACTGATAGCCCTCCCCATACCTGTATTTGTTTT
TCTTCTACTCTCTGTTATGTGAATCACGCACTTCCGCACAACGCGAATGG
AAGACTGACGACTATAGTGGAGCTGTCTACGACTTCGGCATCGTCATCGA
CCGCGCCGAGGTTCCTTCTGCCACCGACTATATCCGACGAGCCTGTGCAT
TCTGCTGTGGACAGGTGAACGCCATCACCTCCTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig98:166269..168553-

>mRNA_P-littoralis_Contig98.30.1 ID=mRNA_P-littoralis_Contig98.30.1|Name=mRNA_P-littoralis_Contig98.30.1|organism=Pylaiella littoralis U1_48|type=CDS|length=363bp|location=Sequence derived from alignment at P-littoralis_Contig98:166269..168553- (Pylaiella littoralis U1_48)
TCCATCGAGCAGCACGACTCAACCTTCTGGCCGGCTTACTCGTTGCGAGG
GCGGCTGAGGTACAAAGCGGGGAACATTCCTGGAGCCCTGCAAGACCTGA
CGGTGTGCGTGCAAGAGGCGCCGCAAGATCGAGCCGCTCTAAAGACTCGC
GCCAGACTGTTTGCTAGTCGAGGACTCTGGGAGGATGCCTCTAGAGACCT
TTCAGCCGGACTCCGTGTGGATCCCAACGATACTGACGACTATAGTGGAG
CTGTCTACGACTTCGGCATCGTCATCGACCGCGCCGAGGTTCCTTCTGCC
ACCGACTATATCCGACGAGCCTGTGCATTCTGCTGTGGACAGGTGAACGC
CATCACCTCCTAA
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