mRNA_P-littoralis_Contig979.8.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig979.8.1 vs. uniprot
Match: D7G5Q8_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Q8_ECTSI) HSP 1 Score: 458 bits (1179), Expect = 3.590e-151 Identity = 225/255 (88.24%), Postives = 238/255 (93.33%), Query Frame = 1
Query: 379 MSSRLPVAPEADAPKSLALPFLPQPEALDGTMIGDVGFDPLGLATPGNLDRYREAELKHGRLAMVALAGWPVATLLLGLLTKIVPPASVCTGNGCAIDQTLSGSALPLEAIGNVSFAYWGSALALAVAAELTAVRRRKNSNVERLRNGPDNYRAGDLGLDPFGLADDEMRLREIKHGRLAMAAFAFHYAGVLLEKKGVVVGHQLWGSVCVYNLKWGLSTLPPPICYPRPEAALDTTLSWEIMYRVLSGFFQEPYY 1143
MSSRLPV P+ DAP+S+ALPFLP+PEALDGTMIGDVGFDPLG A NLDRYREAELKHGRLAMVALAGWPVATL LGLLTK++PPA+VCTGNGCAIDQT SGSALPLEAIGNVSF YWGSALALAVAAEL A+RR K S+V R+ GPD YRAGDLGLDPF LADDEMRLREIKHGRLAMAAFAFHYAGVLLEKKGVVVGHQLWGSVCVYNLKWG+S+LPPPICYPRPEAALDTTLSWEIMYRVLSGFF+EPYY
Sbjct: 2 MSSRLPVIPDTDAPRSVALPFLPRPEALDGTMIGDVGFDPLGFAAEDNLDRYREAELKHGRLAMVALAGWPVATLFLGLLTKLIPPATVCTGNGCAIDQTWSGSALPLEAIGNVSFVYWGSALALAVAAELVAIRR-KQSSVGRV--GPDEYRAGDLGLDPFNLADDEMRLREIKHGRLAMAAFAFHYAGVLLEKKGVVVGHQLWGSVCVYNLKWGMSSLPPPICYPRPEAALDTTLSWEIMYRVLSGFFKEPYY 253
BLAST of mRNA_P-littoralis_Contig979.8.1 vs. uniprot
Match: A0A835ZHI1_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHI1_9STRA) HSP 1 Score: 315 bits (807), Expect = 1.240e-96 Identity = 158/247 (63.97%), Postives = 182/247 (73.68%), Query Frame = 1
Query: 403 PEADAPKSLALPFLPQPEALDGTMIGDVGFDPLGLATPGNLDRYREAELKHGRLAMVALAGWPVATLLLGLLTKIVPPASVCTGNGCAIDQTLSGSALPLEAIGNVSFAYWGSALALAVAAELTAVRRRKNSNVERLRNGPDNYRAGDLGLDPFGLADDEMRLREIKHGRLAMAAFAFHYAGVLLEKKGVVVGHQLWGSVCVYNLKWGLSTLPPPICYPRPEAALDTTLSWEIMYRVLSGFFQEPYY 1143
P AD KS ALPFL P M GD GFDPLG AT N+DR RE ELKHGRLAMVAL GWPVA L+LGLL + VPPA+VCTG+GC +D +LS ALPL+AIG YW SALALA+ AE+ A++RR+ GPD GDLG+DPF LA D+MRL+E+KHGRLAMAAFA HYAGVL + KGVV HQ+W VCVYN + L P PICYPRPEAALDT LSWEIM+RVL+G+F+EPYY
Sbjct: 5 PSADVGKSRALPFLQAPFFAGSDMTGDAGFDPLGFATEDNIDRMRECELKHGRLAMVALGGWPVAELVLGLLQRAVPPATVCTGSGCTVDSSLSAYALPLQAIGRFGAVYWASALALAIVAEVAALKRRQEW-------GPD-LPLGDLGVDPFKLASDDMRLKELKHGRLAMAAFAVHYAGVLAKNKGVVFAHQMWSQVCVYNFRADLG-FPAPICYPRPEAALDTVLSWEIMFRVLTGYFKEPYY 242
BLAST of mRNA_P-littoralis_Contig979.8.1 vs. uniprot
Match: A0A0M0K4A5_9EUKA (Protein fucoxanthin chlorophyll a c protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K4A5_9EUKA) HSP 1 Score: 201 bits (512), Expect = 3.610e-55 Identity = 118/244 (48.36%), Postives = 150/244 (61.48%), Query Frame = 1
Query: 421 KSLALPFLPQPEALDGTMIGDVGFDPLGLATPGNLDRYREAELKHGRLAMVALAGWPVATLLLGLLTKIVPPASVCTGNGCAIDQTLSG--SALPLEAIGNVSFAYWGSALALAVAAELTAVRRRKNSNVERLRNGPDNYRAGDLGLDPFGLADDEMRLREIKHGRLAMAAFAFHYAGVLLEKKGVVVGHQLWGSVCVYNLKWGLSTLPPPICYPR-PEAALDTTLSWEIMYRVLSGFFQEPYY 1143
+S+++PFLP+P ALDGTMIGDVGFDPLG+AT NL R REAEL+HGRLAMVA GWP+A L K+VP ++VCTG GC +D+T G +AL L IG VS AYWGS LALAV EL A R+ + LR L +D ++L E+KHGRLAM A A +++ LL WG CVY+L +CYP+ A D LSWEI++R L+G+F+EPY+
Sbjct: 22 RSISVPFLPRPAALDGTMIGDVGFDPLGIATTANLARMREAELRHGRLAMVATWGWPIAEGGFALAQKLVPVSTVCTGVGCYVDKTDEGRQAALQLADIGQVSIAYWGSLLALAVHGELRA---RQGCYFDPLR----------LYVDADDTERVRLQLAELKHGRLAMCAVATYWSTKLL-----------WGETCVYSLT---RQSAQALCYPQYTNEAFDYVLSWEILFRTLTGYFREPYF 238
BLAST of mRNA_P-littoralis_Contig979.8.1 vs. uniprot
Match: A0A7S0L6L5_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L6L5_9EUKA) HSP 1 Score: 193 bits (491), Expect = 5.670e-52 Identity = 123/280 (43.93%), Postives = 153/280 (54.64%), Query Frame = 1
Query: 376 AMSSRLPVAPEADAPKSLALPFLPQPEALDGTMIGDVGFDPLGLATPGNLDRYREAELKHGRLAMVALAGWPVATLLLGLLTKIVPPASVCTGNGCAIDQTLSG--SALPLEAIGNVSFAYWGSALALAVAAELTAVRRRKNSNVERLRNGPDNYRAGDLGLDPFGL---AD----DEMRLREIKHGRLAMAAFAFHYAGVL--------------LEKKGVVVGHQLWGSVCVYNLKWGLSTLPPPICYPR-PEAALDTTLSWEIMYRVLSGFFQEPYY 1143
A + LP AP +SLALPF+P P +LDG+++GD GFDPLGLAT +L R R AEL+H RLAMVA GWP+A + K+VP SVCTG GC +D T +AL L IG +S YWG LA A+A EL A R G +G DP L AD + + L EIKHGRLAM A A H+A L + K + HQLW CVY+L T ICYP+ D LSWEIM+RV++G+F+EPY+
Sbjct: 9 ACGALLPNAPR----QSLALPFIPAPLSLDGSLVGDAGFDPLGLATVESLPRLRAAELRHARLAMVATWGWPIAESGFWIAQKLVPVKSVCTGGGCYVDSTEGARQAALQLADIGVISVGYWGLLLAAAIAGELRA----------RSLEG-----SGQPAFDPLSLWTAADAPEQERLELAEIKHGRLAMVAIAAHWATKLGAACGSAAAAAAAGVPKGTLTFAHQLWSQTCVYSL-----TKQTTICYPQFTNDQFDFILSWEIMFRVVTGYFREPYF 264
BLAST of mRNA_P-littoralis_Contig979.8.1 vs. uniprot
Match: R1D3G8_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D3G8_EMIHU) HSP 1 Score: 174 bits (441), Expect = 7.590e-46 Identity = 106/254 (41.73%), Postives = 144/254 (56.69%), Query Frame = 1
Query: 391 LPVAPEADAPKSLALPFLPQPEALDGTMIGDVGFDPLGLATPGNLDRYREAELKHGRLAMVALAGWPVATLLLGLLTKIVPPASVCTGNGCAIDQTLSG--SALPLEAIGNVSFAYWGSALALAVAAELTAVRRRKNSNVERLRNGPDNYRAGDLGLDPFGLADDEMRLREIKHGRLAMAAFAFHYAGVLLEKKGVVVGHQLWGSVCVYNLKWGLSTLPPPICYPRPEAA-LDTTLSWEIMYRVLSGFFQEPYY 1143
+P +P P+S+A+P L P MIGD+GFDPLGLAT NL R REAE++HGRLAMVA GWPVA + + +++P +SVC+G+GC +D+T +G +AL L IG +S YWG+ LA A R G DP L + L E+KHGRLAMAA A H+A L +G G CVY+ L ++ +C P+ AA D LS+EI++RVL+G+F+EPY+
Sbjct: 2 VPTSPST--PRSVAIPLLQSP------MIGDLGFDPLGLATADNLQRMREAEVRHGRLAMVAAWGWPVAEVGFAVAQRLLPVSSVCSGDGCGVDRTEAGRQAALQLSDIGLISACYWGALLAAAA------------------RRG--------CAFDPLRL---RLELAELKHGRLAMAAVALHWATKLAGARGSAAAALAAGETCVYSAAESLRSVQG-VCMPQWTAAPFDAVLSYEILFRVLTGYFREPYF 217
BLAST of mRNA_P-littoralis_Contig979.8.1 vs. uniprot
Match: R1CT78_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CT78_EMIHU) HSP 1 Score: 124 bits (311), Expect = 2.140e-29 Identity = 68/133 (51.13%), Postives = 90/133 (67.67%), Query Frame = 1
Query: 394 PVAPEADAPKSLALPFLPQPEALDGTMIGDVGFDPLGLATPGNLDRYREAELKHGRLAMVALAGWPVATLLLGLLTKIVPPASVCTGNGCAIDQTLSG--SALPLEAIGNVSFAYWGSALALAVAAELTAVRR 786
P++P P+S+A+P L P MIGD+GFDPLGLAT NL R REAE++HGRLAMVA GWPVA + + +++P +SVC+G+GC +D+T +G +AL L IG +S YWG+ LA AV EL A R
Sbjct: 14 PMSPST--PRSVAIPLLQSP------MIGDLGFDPLGLATADNLQRMREAEVRHGRLAMVAAWGWPVAEVGFAVAQRLLPVSSVCSGDGCGVDRTEAGRQAALQLSDIGLISACYWGTLLAAAVTGELQAPHR 138
BLAST of mRNA_P-littoralis_Contig979.8.1 vs. uniprot
Match: B7G4U8_PHATC (Protein fucoxanthin chlorophyll a/c protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G4U8_PHATC) HSP 1 Score: 122 bits (305), Expect = 3.930e-27 Identity = 80/198 (40.40%), Postives = 112/198 (56.57%), Query Frame = 1
Query: 403 PEADAPKSLALPFLPQPEALDGTMIGDVGFDPLGLA-TPGNLDRYREAELKHGRLAMVALAGWPVATLLLGLLTKIVPPASVCTGNGCAIDQTLSGSALPLEAIGNVSFAYWGSALALAVAAELTAVRRRKNSNVERLRNGPDNYRAGDLGLDPFGL------ADDEMRLREIKHGRLAMAAFAFHYAGVLLEKKGVV 975
P A S +LPF+ +P ALDGT++GDVGFDPLG A T +L YREAE+KH RLAM+A AGWP++ L + + + N A L+G +G VS YW + L A A ++ + + + +N PD Y G+LG+DPFGL A ++M+L+E+K+GRLAM A + + K GVV
Sbjct: 53 PPALPKMSQSLPFMERPAALDGTLVGDVGFDPLGFAKTKADLINYREAEVKHARLAMLAAAGWPLSELFDAKIANWMGMTPLLDANDRA-PSLLNGG------LGKVSPVYWVACLVAAAAIDVYGISKAR-------KNEPD-YFPGNLGIDPFGLFPKDAAAQEDMKLKELKNGRLAMIAISAFAFQEFVSKFGVV 235
BLAST of mRNA_P-littoralis_Contig979.8.1 vs. uniprot
Match: A0A7S3PZK5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PZK5_9STRA) HSP 1 Score: 118 bits (295), Expect = 5.800e-26 Identity = 80/194 (41.24%), Postives = 109/194 (56.19%), Query Frame = 1
Query: 412 DAPKSLALPFLPQPEALDGTMIGDVGFDPLGLA-TPGNLDRYREAELKHGRLAMVALAGWPVATLLLGLLTKIVPPASVCTGNGCAIDQTLSGSALPLEAIGNVSFAYWGSALALAVAAELTAVRRRKNSNVERLRNGPDNYRAGDLGLDPFGLADDE------MRLREIKHGRLAMAAFAFHYAGVLLEKKGV 972
++ +S ++PFL +PE LDG++ GDVGFDPLG A T L +REAE+KH RLAM+A AGWP++ LL ++ A A+D +GSALP A N+S +W ALA A +L + + L N PD Y G+LG DP L + M+L EIKHGR AM A AF++ + K +
Sbjct: 65 ESSQSKSIPFLEKPEFLDGSIAGDVGFDPLGFAKTEKRLQIFREAEVKHARLAMLAAAGWPLSELLNNKFADVLNLAP-------ALDS--AGSALPFNA--NISDNFWIGALAFASVVDLYG-------SYKALENEPD-YFPGNLGFDPLSLYPKDPMEQKAMQLAEIKHGRTAMVAVAFYFIEEYMTKSNL 239
BLAST of mRNA_P-littoralis_Contig979.8.1 vs. uniprot
Match: A0A7S4JV13_9STRA (Hypothetical protein n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JV13_9STRA) HSP 1 Score: 115 bits (287), Expect = 1.170e-24 Identity = 79/202 (39.11%), Postives = 109/202 (53.96%), Query Frame = 1
Query: 391 LPVAPEADAPKSLALPFLPQPEALDGTMIGDVGFDPLGLA-TPGNLDRYREAELKHGRLAMVALAGWPVATLLLGLLTKIVPPASVCTGNGCAIDQTLSGSALPLEAIGNVSFAYWGSALALAVAAELTAVRRRKNSNVERLRNGPDNYRAGDLGLDPFGL------ADDEMRLREIKHGRLAMAAFAFHYAGVLLEKKGVV 975
+PVAP S ++PF+ +P AL G + GDVGFDPLG A + +L YREAE+KH RLAM+A AGWP++ + KI ++ A+D +L +G VS YW + L LA A + +++ K +N PD Y G+LG DPFG+ + M+L EIK+GRLAM A + K GVV
Sbjct: 57 VPVAPPPLPTMSQSMPFMERPAALTGAIAGDVGFDPLGFAKSESDLMNYREAEVKHARLAMLAAAGWPLSEVF---DRKIATALNLAP----AVDANDRAPSLLNGGLGKVSPLYWVACLGLAAAVDFYGIQKSKENN-------PD-YFPGNLGFDPFGVYPKDKDGQERMQLAEIKNGRLAMIAIFAFAVQEAVSKVGVV 243
BLAST of mRNA_P-littoralis_Contig979.8.1 vs. uniprot
Match: A0A7S3Q9Z2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q9Z2_9STRA) HSP 1 Score: 114 bits (285), Expect = 1.210e-24 Identity = 93/250 (37.20%), Postives = 122/250 (48.80%), Query Frame = 1
Query: 235 LFILFSSACIMGVSAFLPTSVPPLAESSKPGVSGGGSVNRQQRVRPLAMSSRLPVAPEADA------PKSLALPFLPQPEALDGTMIGDVGFDPLGLA-TPGNLDRYREAELKHGRLAMVALAGWPVATLLLGLLTKIVPPASVCTGNGCAIDQTLSGSALPLEAIGNVSFAYWGSALALAVAAELTAVRRRKNSNVERLRNGPDNYRAGDLGLDPFGLADDE--------MRLREIKHGRLAMAAFAFH 939
+ IL SSAC AF+PTS PL+ +S S+ V L + +P A+ +S A+PF+ +P+ LDG+M GDVGFDPLGLA +P L +REAE+KH RLAM+A AGWP++ LL + A G A LS + +YW LA A ++ L N D Y G+LG DP G D+ M+L EIKHGR AM AFAF+
Sbjct: 8 IVILASSAC-----AFVPTSNGPLSSTS--------SLRLSDEV--LEVLEEIPNGDPANLNELFRKTQSKAIPFMERPDLLDGSMAGDVGFDPLGLAKSPKMLRMFREAEVKHARLAMLAAAGWPLSELLDKKIAGFFNLAPALDAAGRATPSALS----------HTIDSYWIGVLAFAAIVDIYGT-------YVALDNDED-YFPGNLGFDPMGFYPDDSDPKGQKAMQLAEIKHGRTAMMAFAFY 224 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig979.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig979.8.1 >prot_P-littoralis_Contig979.8.1 ID=prot_P-littoralis_Contig979.8.1|Name=mRNA_P-littoralis_Contig979.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=307bp MRVLFILFSSACIMGVSAFLPTSVPPLAESSKPGVSGGGSVNRQQRVRPLback to top mRNA from alignment at P-littoralis_Contig979:40205..49954- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig979.8.1 ID=mRNA_P-littoralis_Contig979.8.1|Name=mRNA_P-littoralis_Contig979.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=9750bp|location=Sequence derived from alignment at P-littoralis_Contig979:40205..49954- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig979:40205..49954- >mRNA_P-littoralis_Contig979.8.1 ID=mRNA_P-littoralis_Contig979.8.1|Name=mRNA_P-littoralis_Contig979.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=921bp|location=Sequence derived from alignment at P-littoralis_Contig979:40205..49954- (Pylaiella littoralis U1_48)back to top |