mRNA_P-littoralis_Contig979.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig979.8.1
Unique NamemRNA_P-littoralis_Contig979.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig979.8.1 vs. uniprot
Match: D7G5Q8_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Q8_ECTSI)

HSP 1 Score: 458 bits (1179), Expect = 3.590e-151
Identity = 225/255 (88.24%), Postives = 238/255 (93.33%), Query Frame = 1
Query:  379 MSSRLPVAPEADAPKSLALPFLPQPEALDGTMIGDVGFDPLGLATPGNLDRYREAELKHGRLAMVALAGWPVATLLLGLLTKIVPPASVCTGNGCAIDQTLSGSALPLEAIGNVSFAYWGSALALAVAAELTAVRRRKNSNVERLRNGPDNYRAGDLGLDPFGLADDEMRLREIKHGRLAMAAFAFHYAGVLLEKKGVVVGHQLWGSVCVYNLKWGLSTLPPPICYPRPEAALDTTLSWEIMYRVLSGFFQEPYY 1143
            MSSRLPV P+ DAP+S+ALPFLP+PEALDGTMIGDVGFDPLG A   NLDRYREAELKHGRLAMVALAGWPVATL LGLLTK++PPA+VCTGNGCAIDQT SGSALPLEAIGNVSF YWGSALALAVAAEL A+RR K S+V R+  GPD YRAGDLGLDPF LADDEMRLREIKHGRLAMAAFAFHYAGVLLEKKGVVVGHQLWGSVCVYNLKWG+S+LPPPICYPRPEAALDTTLSWEIMYRVLSGFF+EPYY
Sbjct:    2 MSSRLPVIPDTDAPRSVALPFLPRPEALDGTMIGDVGFDPLGFAAEDNLDRYREAELKHGRLAMVALAGWPVATLFLGLLTKLIPPATVCTGNGCAIDQTWSGSALPLEAIGNVSFVYWGSALALAVAAELVAIRR-KQSSVGRV--GPDEYRAGDLGLDPFNLADDEMRLREIKHGRLAMAAFAFHYAGVLLEKKGVVVGHQLWGSVCVYNLKWGMSSLPPPICYPRPEAALDTTLSWEIMYRVLSGFFKEPYY 253          
BLAST of mRNA_P-littoralis_Contig979.8.1 vs. uniprot
Match: A0A835ZHI1_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHI1_9STRA)

HSP 1 Score: 315 bits (807), Expect = 1.240e-96
Identity = 158/247 (63.97%), Postives = 182/247 (73.68%), Query Frame = 1
Query:  403 PEADAPKSLALPFLPQPEALDGTMIGDVGFDPLGLATPGNLDRYREAELKHGRLAMVALAGWPVATLLLGLLTKIVPPASVCTGNGCAIDQTLSGSALPLEAIGNVSFAYWGSALALAVAAELTAVRRRKNSNVERLRNGPDNYRAGDLGLDPFGLADDEMRLREIKHGRLAMAAFAFHYAGVLLEKKGVVVGHQLWGSVCVYNLKWGLSTLPPPICYPRPEAALDTTLSWEIMYRVLSGFFQEPYY 1143
            P AD  KS ALPFL  P      M GD GFDPLG AT  N+DR RE ELKHGRLAMVAL GWPVA L+LGLL + VPPA+VCTG+GC +D +LS  ALPL+AIG     YW SALALA+ AE+ A++RR+         GPD    GDLG+DPF LA D+MRL+E+KHGRLAMAAFA HYAGVL + KGVV  HQ+W  VCVYN +  L   P PICYPRPEAALDT LSWEIM+RVL+G+F+EPYY
Sbjct:    5 PSADVGKSRALPFLQAPFFAGSDMTGDAGFDPLGFATEDNIDRMRECELKHGRLAMVALGGWPVAELVLGLLQRAVPPATVCTGSGCTVDSSLSAYALPLQAIGRFGAVYWASALALAIVAEVAALKRRQEW-------GPD-LPLGDLGVDPFKLASDDMRLKELKHGRLAMAAFAVHYAGVLAKNKGVVFAHQMWSQVCVYNFRADLG-FPAPICYPRPEAALDTVLSWEIMFRVLTGYFKEPYY 242          
BLAST of mRNA_P-littoralis_Contig979.8.1 vs. uniprot
Match: A0A0M0K4A5_9EUKA (Protein fucoxanthin chlorophyll a c protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K4A5_9EUKA)

HSP 1 Score: 201 bits (512), Expect = 3.610e-55
Identity = 118/244 (48.36%), Postives = 150/244 (61.48%), Query Frame = 1
Query:  421 KSLALPFLPQPEALDGTMIGDVGFDPLGLATPGNLDRYREAELKHGRLAMVALAGWPVATLLLGLLTKIVPPASVCTGNGCAIDQTLSG--SALPLEAIGNVSFAYWGSALALAVAAELTAVRRRKNSNVERLRNGPDNYRAGDLGLDPFGLADDEMRLREIKHGRLAMAAFAFHYAGVLLEKKGVVVGHQLWGSVCVYNLKWGLSTLPPPICYPR-PEAALDTTLSWEIMYRVLSGFFQEPYY 1143
            +S+++PFLP+P ALDGTMIGDVGFDPLG+AT  NL R REAEL+HGRLAMVA  GWP+A     L  K+VP ++VCTG GC +D+T  G  +AL L  IG VS AYWGS LALAV  EL A   R+    + LR          L +D        ++L E+KHGRLAM A A +++  LL           WG  CVY+L          +CYP+    A D  LSWEI++R L+G+F+EPY+
Sbjct:   22 RSISVPFLPRPAALDGTMIGDVGFDPLGIATTANLARMREAELRHGRLAMVATWGWPIAEGGFALAQKLVPVSTVCTGVGCYVDKTDEGRQAALQLADIGQVSIAYWGSLLALAVHGELRA---RQGCYFDPLR----------LYVDADDTERVRLQLAELKHGRLAMCAVATYWSTKLL-----------WGETCVYSLT---RQSAQALCYPQYTNEAFDYVLSWEILFRTLTGYFREPYF 238          
BLAST of mRNA_P-littoralis_Contig979.8.1 vs. uniprot
Match: A0A7S0L6L5_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L6L5_9EUKA)

HSP 1 Score: 193 bits (491), Expect = 5.670e-52
Identity = 123/280 (43.93%), Postives = 153/280 (54.64%), Query Frame = 1
Query:  376 AMSSRLPVAPEADAPKSLALPFLPQPEALDGTMIGDVGFDPLGLATPGNLDRYREAELKHGRLAMVALAGWPVATLLLGLLTKIVPPASVCTGNGCAIDQTLSG--SALPLEAIGNVSFAYWGSALALAVAAELTAVRRRKNSNVERLRNGPDNYRAGDLGLDPFGL---AD----DEMRLREIKHGRLAMAAFAFHYAGVL--------------LEKKGVVVGHQLWGSVCVYNLKWGLSTLPPPICYPR-PEAALDTTLSWEIMYRVLSGFFQEPYY 1143
            A  + LP AP     +SLALPF+P P +LDG+++GD GFDPLGLAT  +L R R AEL+H RLAMVA  GWP+A     +  K+VP  SVCTG GC +D T     +AL L  IG +S  YWG  LA A+A EL A          R   G     +G    DP  L   AD    + + L EIKHGRLAM A A H+A  L              + K  +   HQLW   CVY+L     T    ICYP+      D  LSWEIM+RV++G+F+EPY+
Sbjct:    9 ACGALLPNAPR----QSLALPFIPAPLSLDGSLVGDAGFDPLGLATVESLPRLRAAELRHARLAMVATWGWPIAESGFWIAQKLVPVKSVCTGGGCYVDSTEGARQAALQLADIGVISVGYWGLLLAAAIAGELRA----------RSLEG-----SGQPAFDPLSLWTAADAPEQERLELAEIKHGRLAMVAIAAHWATKLGAACGSAAAAAAAGVPKGTLTFAHQLWSQTCVYSL-----TKQTTICYPQFTNDQFDFILSWEIMFRVVTGYFREPYF 264          
BLAST of mRNA_P-littoralis_Contig979.8.1 vs. uniprot
Match: R1D3G8_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D3G8_EMIHU)

HSP 1 Score: 174 bits (441), Expect = 7.590e-46
Identity = 106/254 (41.73%), Postives = 144/254 (56.69%), Query Frame = 1
Query:  391 LPVAPEADAPKSLALPFLPQPEALDGTMIGDVGFDPLGLATPGNLDRYREAELKHGRLAMVALAGWPVATLLLGLLTKIVPPASVCTGNGCAIDQTLSG--SALPLEAIGNVSFAYWGSALALAVAAELTAVRRRKNSNVERLRNGPDNYRAGDLGLDPFGLADDEMRLREIKHGRLAMAAFAFHYAGVLLEKKGVVVGHQLWGSVCVYNLKWGLSTLPPPICYPRPEAA-LDTTLSWEIMYRVLSGFFQEPYY 1143
            +P +P    P+S+A+P L  P      MIGD+GFDPLGLAT  NL R REAE++HGRLAMVA  GWPVA +   +  +++P +SVC+G+GC +D+T +G  +AL L  IG +S  YWG+ LA A                   R G           DP  L    + L E+KHGRLAMAA A H+A  L   +G        G  CVY+    L ++   +C P+  AA  D  LS+EI++RVL+G+F+EPY+
Sbjct:    2 VPTSPST--PRSVAIPLLQSP------MIGDLGFDPLGLATADNLQRMREAEVRHGRLAMVAAWGWPVAEVGFAVAQRLLPVSSVCSGDGCGVDRTEAGRQAALQLSDIGLISACYWGALLAAAA------------------RRG--------CAFDPLRL---RLELAELKHGRLAMAAVALHWATKLAGARGSAAAALAAGETCVYSAAESLRSVQG-VCMPQWTAAPFDAVLSYEILFRVLTGYFREPYF 217          
BLAST of mRNA_P-littoralis_Contig979.8.1 vs. uniprot
Match: R1CT78_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CT78_EMIHU)

HSP 1 Score: 124 bits (311), Expect = 2.140e-29
Identity = 68/133 (51.13%), Postives = 90/133 (67.67%), Query Frame = 1
Query:  394 PVAPEADAPKSLALPFLPQPEALDGTMIGDVGFDPLGLATPGNLDRYREAELKHGRLAMVALAGWPVATLLLGLLTKIVPPASVCTGNGCAIDQTLSG--SALPLEAIGNVSFAYWGSALALAVAAELTAVRR 786
            P++P    P+S+A+P L  P      MIGD+GFDPLGLAT  NL R REAE++HGRLAMVA  GWPVA +   +  +++P +SVC+G+GC +D+T +G  +AL L  IG +S  YWG+ LA AV  EL A  R
Sbjct:   14 PMSPST--PRSVAIPLLQSP------MIGDLGFDPLGLATADNLQRMREAEVRHGRLAMVAAWGWPVAEVGFAVAQRLLPVSSVCSGDGCGVDRTEAGRQAALQLSDIGLISACYWGTLLAAAVTGELQAPHR 138          
BLAST of mRNA_P-littoralis_Contig979.8.1 vs. uniprot
Match: B7G4U8_PHATC (Protein fucoxanthin chlorophyll a/c protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G4U8_PHATC)

HSP 1 Score: 122 bits (305), Expect = 3.930e-27
Identity = 80/198 (40.40%), Postives = 112/198 (56.57%), Query Frame = 1
Query:  403 PEADAPKSLALPFLPQPEALDGTMIGDVGFDPLGLA-TPGNLDRYREAELKHGRLAMVALAGWPVATLLLGLLTKIVPPASVCTGNGCAIDQTLSGSALPLEAIGNVSFAYWGSALALAVAAELTAVRRRKNSNVERLRNGPDNYRAGDLGLDPFGL------ADDEMRLREIKHGRLAMAAFAFHYAGVLLEKKGVV 975
            P A    S +LPF+ +P ALDGT++GDVGFDPLG A T  +L  YREAE+KH RLAM+A AGWP++ L    +   +    +   N  A    L+G       +G VS  YW + L  A A ++  + + +       +N PD Y  G+LG+DPFGL      A ++M+L+E+K+GRLAM A +       + K GVV
Sbjct:   53 PPALPKMSQSLPFMERPAALDGTLVGDVGFDPLGFAKTKADLINYREAEVKHARLAMLAAAGWPLSELFDAKIANWMGMTPLLDANDRA-PSLLNGG------LGKVSPVYWVACLVAAAAIDVYGISKAR-------KNEPD-YFPGNLGIDPFGLFPKDAAAQEDMKLKELKNGRLAMIAISAFAFQEFVSKFGVV 235          
BLAST of mRNA_P-littoralis_Contig979.8.1 vs. uniprot
Match: A0A7S3PZK5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PZK5_9STRA)

HSP 1 Score: 118 bits (295), Expect = 5.800e-26
Identity = 80/194 (41.24%), Postives = 109/194 (56.19%), Query Frame = 1
Query:  412 DAPKSLALPFLPQPEALDGTMIGDVGFDPLGLA-TPGNLDRYREAELKHGRLAMVALAGWPVATLLLGLLTKIVPPASVCTGNGCAIDQTLSGSALPLEAIGNVSFAYWGSALALAVAAELTAVRRRKNSNVERLRNGPDNYRAGDLGLDPFGLADDE------MRLREIKHGRLAMAAFAFHYAGVLLEKKGV 972
            ++ +S ++PFL +PE LDG++ GDVGFDPLG A T   L  +REAE+KH RLAM+A AGWP++ LL      ++  A        A+D   +GSALP  A  N+S  +W  ALA A   +L         + + L N PD Y  G+LG DP  L   +      M+L EIKHGR AM A AF++    + K  +
Sbjct:   65 ESSQSKSIPFLEKPEFLDGSIAGDVGFDPLGFAKTEKRLQIFREAEVKHARLAMLAAAGWPLSELLNNKFADVLNLAP-------ALDS--AGSALPFNA--NISDNFWIGALAFASVVDLYG-------SYKALENEPD-YFPGNLGFDPLSLYPKDPMEQKAMQLAEIKHGRTAMVAVAFYFIEEYMTKSNL 239          
BLAST of mRNA_P-littoralis_Contig979.8.1 vs. uniprot
Match: A0A7S4JV13_9STRA (Hypothetical protein n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JV13_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.170e-24
Identity = 79/202 (39.11%), Postives = 109/202 (53.96%), Query Frame = 1
Query:  391 LPVAPEADAPKSLALPFLPQPEALDGTMIGDVGFDPLGLA-TPGNLDRYREAELKHGRLAMVALAGWPVATLLLGLLTKIVPPASVCTGNGCAIDQTLSGSALPLEAIGNVSFAYWGSALALAVAAELTAVRRRKNSNVERLRNGPDNYRAGDLGLDPFGL------ADDEMRLREIKHGRLAMAAFAFHYAGVLLEKKGVV 975
            +PVAP      S ++PF+ +P AL G + GDVGFDPLG A +  +L  YREAE+KH RLAM+A AGWP++ +      KI    ++      A+D      +L    +G VS  YW + L LA A +   +++ K +N       PD Y  G+LG DPFG+        + M+L EIK+GRLAM A         + K GVV
Sbjct:   57 VPVAPPPLPTMSQSMPFMERPAALTGAIAGDVGFDPLGFAKSESDLMNYREAEVKHARLAMLAAAGWPLSEVF---DRKIATALNLAP----AVDANDRAPSLLNGGLGKVSPLYWVACLGLAAAVDFYGIQKSKENN-------PD-YFPGNLGFDPFGVYPKDKDGQERMQLAEIKNGRLAMIAIFAFAVQEAVSKVGVV 243          
BLAST of mRNA_P-littoralis_Contig979.8.1 vs. uniprot
Match: A0A7S3Q9Z2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q9Z2_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.210e-24
Identity = 93/250 (37.20%), Postives = 122/250 (48.80%), Query Frame = 1
Query:  235 LFILFSSACIMGVSAFLPTSVPPLAESSKPGVSGGGSVNRQQRVRPLAMSSRLPVAPEADA------PKSLALPFLPQPEALDGTMIGDVGFDPLGLA-TPGNLDRYREAELKHGRLAMVALAGWPVATLLLGLLTKIVPPASVCTGNGCAIDQTLSGSALPLEAIGNVSFAYWGSALALAVAAELTAVRRRKNSNVERLRNGPDNYRAGDLGLDPFGLADDE--------MRLREIKHGRLAMAAFAFH 939
            + IL SSAC     AF+PTS  PL+ +S        S+     V  L +   +P    A+        +S A+PF+ +P+ LDG+M GDVGFDPLGLA +P  L  +REAE+KH RLAM+A AGWP++ LL   +      A      G A    LS          +   +YW   LA A   ++             L N  D Y  G+LG DP G   D+        M+L EIKHGR AM AFAF+
Sbjct:    8 IVILASSAC-----AFVPTSNGPLSSTS--------SLRLSDEV--LEVLEEIPNGDPANLNELFRKTQSKAIPFMERPDLLDGSMAGDVGFDPLGLAKSPKMLRMFREAEVKHARLAMLAAAGWPLSELLDKKIAGFFNLAPALDAAGRATPSALS----------HTIDSYWIGVLAFAAIVDIYGT-------YVALDNDED-YFPGNLGFDPMGFYPDDSDPKGQKAMQLAEIKHGRTAMMAFAFY 224          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig979.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5Q8_ECTSI3.590e-15188.24Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A835ZHI1_9STRA1.240e-9663.97Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A0M0K4A5_9EUKA3.610e-5548.36Protein fucoxanthin chlorophyll a c protein n=1 Ta... [more]
A0A7S0L6L5_9EUKA5.670e-5243.93Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
R1D3G8_EMIHU7.590e-4641.73Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
R1CT78_EMIHU2.140e-2951.13Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
B7G4U8_PHATC3.930e-2740.40Protein fucoxanthin chlorophyll a/c protein n=2 Ta... [more]
A0A7S3PZK5_9STRA5.800e-2641.24Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S4JV13_9STRA1.170e-2439.11Hypothetical protein n=4 Tax=Odontella aurita TaxI... [more]
A0A7S3Q9Z2_9STRA1.210e-2437.20Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig979contigP-littoralis_Contig979:40205..49954 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G5Q8
PFAMsChloroa_b-bind
Model size3152
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorychloroplast
Exons7
Evalue4.7e-162
EggNOG OGs2C5UI@1|root,2S2YV@2759|Eukaryota
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-12_008770.1
DescriptionChlorophyll A-B binding protein
Cds size921
COG categoryU
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig979.8.1prot_P-littoralis_Contig979.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig979 42211..49729 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791898.4640186-UTR-P-littoralis_Contig979:40204..422101680791898.4640186-UTR-P-littoralis_Contig979:40204..42210Pylaiella littoralis U1_48UTRP-littoralis_Contig979 40205..42210 -
1680791898.567792-UTR-P-littoralis_Contig979:49729..499541680791898.567792-UTR-P-littoralis_Contig979:49729..49954Pylaiella littoralis U1_48UTRP-littoralis_Contig979 49730..49954 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791898.4844093-CDS-P-littoralis_Contig979:42210..424741680791898.4844093-CDS-P-littoralis_Contig979:42210..42474Pylaiella littoralis U1_48CDSP-littoralis_Contig979 42211..42474 -
1680791898.494733-CDS-P-littoralis_Contig979:43643..438191680791898.494733-CDS-P-littoralis_Contig979:43643..43819Pylaiella littoralis U1_48CDSP-littoralis_Contig979 43644..43819 -
1680791898.5092516-CDS-P-littoralis_Contig979:44403..444851680791898.5092516-CDS-P-littoralis_Contig979:44403..44485Pylaiella littoralis U1_48CDSP-littoralis_Contig979 44404..44485 -
1680791898.520483-CDS-P-littoralis_Contig979:45507..456011680791898.520483-CDS-P-littoralis_Contig979:45507..45601Pylaiella littoralis U1_48CDSP-littoralis_Contig979 45508..45601 -
1680791898.5321057-CDS-P-littoralis_Contig979:46034..461391680791898.5321057-CDS-P-littoralis_Contig979:46034..46139Pylaiella littoralis U1_48CDSP-littoralis_Contig979 46035..46139 -
1680791898.544033-CDS-P-littoralis_Contig979:46956..470721680791898.544033-CDS-P-littoralis_Contig979:46956..47072Pylaiella littoralis U1_48CDSP-littoralis_Contig979 46957..47072 -
1680791898.557069-CDS-P-littoralis_Contig979:49645..497291680791898.557069-CDS-P-littoralis_Contig979:49645..49729Pylaiella littoralis U1_48CDSP-littoralis_Contig979 49646..49729 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig979.8.1

>prot_P-littoralis_Contig979.8.1 ID=prot_P-littoralis_Contig979.8.1|Name=mRNA_P-littoralis_Contig979.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=307bp
MRVLFILFSSACIMGVSAFLPTSVPPLAESSKPGVSGGGSVNRQQRVRPL
AMSSRLPVAPEADAPKSLALPFLPQPEALDGTMIGDVGFDPLGLATPGNL
DRYREAELKHGRLAMVALAGWPVATLLLGLLTKIVPPASVCTGNGCAIDQ
TLSGSALPLEAIGNVSFAYWGSALALAVAAELTAVRRRKNSNVERLRNGP
DNYRAGDLGLDPFGLADDEMRLREIKHGRLAMAAFAFHYAGVLLEKKGVV
VGHQLWGSVCVYNLKWGLSTLPPPICYPRPEAALDTTLSWEIMYRVLSGF
FQEPYY*
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mRNA from alignment at P-littoralis_Contig979:40205..49954-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig979.8.1 ID=mRNA_P-littoralis_Contig979.8.1|Name=mRNA_P-littoralis_Contig979.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=9750bp|location=Sequence derived from alignment at P-littoralis_Contig979:40205..49954- (Pylaiella littoralis U1_48)
GCCCGCACGTGAGGACACCATCCGCATGTCCCACGTCTCGCGTCGCGACG TGTATGCCCAGCAGCTTGCAGTCTTTGCTAGCATCACCCGCCAACACCGA GACTGCGGCGACGCTCGCAAAGCTTAGTGTTTCTACTGGGAGCAGTCGAA CAGGCCTCGCGAGAGGTCTTGCTAAAGGGAGCGTCGAAAAACCGGAAGGC CGCGCGGCCTAAAACAACGAAAAAAATGAGGGTGCTCTTCATATTGTTCT CCTCCGCCTGCATCATGGGCGTTTCGGCGTTCTTGCCCACGTCCGTACCT CCTCTCGCGGTGAGTGTGGCCGCTCGATTTGAAACTGAAGCTTCTACATA GCATTTGGTGTGCAGCAGATGCCTCATACGTGATTCGGTTTGATCGCTCA TCTCCCGCCCGTGTGCCGCCTGTCTATGTGTTCGGTGGGGACGCTATACA CTGTACGCATTTCTCACGCGCCTTTTTTTTCATAAATTTATACCAACTGC TGCTGCCGTGTCCTCCCGTGGAACAAACAACATTGTTTGTTTCGTCGAGG ACAAACAACCAATCTTCAAGCTGAGCAGCACTGCTGTTGTACTGCCGTGC ACCGAAGTGCACACACAGCAGCTGCTGCTGTGTACAGCACCTCAATGCTC CATTTGTTTTTCTCACTCACAGAGAAGACATCAATGTGTTCGCCCCCTGC CTAGACGAGTTTGTAGTGGAGATTATCATGAGCAACGAACCCAACAGGGA GTAAATTTTATACTCCGTACAAGTATTTACTCAACATCTCTCTGTAACTT GTGTTTCTATGTGTGTGTTTTGTGCGTTGTCATCCCTTTAATTGGACGCC ACTCTACGTACACCTTTCGGGTAGGCAGACGCTTCAACCGGGGTCACACT GGGGGAAGTCAACACAGGAGTTTTTTTTTTTTTGTCTCCACTTCGCTCTG CGGCGCTTGCCTTTTTGGTTGAGCTTTTATCGCGAGAAAGGGGACAACAA TCCCTTTCTCTCGTCGATGGTACGATCGAATTTTGTCTACGCACGAATTG ATCGTTTTCCACTTTCACGCGCAATGTGACTAAAATCCCCAGATCGTGTT GCTGCACTGGGATTGGAACTCACGCGTGAATGTCATAAGGTTGCGTGGAT GATCAACTGAACCACTGGGGCGACCGGTATGTACAACATGAAAAATCAAA ACTCCAATTATATCATACAATAAATACAAGTACTCTGAAATGGGTGTTGT TTTCGTTGTTGTTGATTCTCACATTCGTTCACCACCACCGTAGTCTACAG CAGTAGCTCGTGGTCACCAACCAGGCTAGCAGGAAAATAAAACAAAAAAA GAAATAAACGATGACCACCCGAACAAAATCAGATAGGGTATATGATGCCG TTGGGGTACCATCTGTGCTGGCCAACCGTACAAAAATACAGAAAGAAACA GGCTCGAAAAAAACAAAACAAAAAACAGAAAATTGGAGACGGACAAAACC AAGGCAAACAACCCAAATACCGTATTCTACACAAGATACCACACCCCGTG TTTGGTTTTTTGCATTCCGTATTGCTCCACAACCAGGAGGGTGCGAACAC CAAACAGCCCGTCATACGAAAGCTCTCGACGAGACCTTTCCAAAACCACC CTTTTCGGCAGTGGCACCCTCCTGGTTGTGGAGCTATACGGAATGCAAAA AGCTTAACACGGGGTGTGGTATCTTGTGTAGAATACGGTAATACCGAACC AGAGCACAGAACCAAGACAACCCAAGGCAACCAAGGCAAACCAAGGCAAA CCAGAGCGCGTGGTCCAGCAGATACGATCAAGGTACGAAAGACTGAAGAC GAAAGACGCAAGGGGGCACGATGACTAAGGTAAAGGAAACAGGCGGCCAA GGAGGAAGAAGAAGGGAAAGGACAAGAGACAAAAAAAGGAGAAAAAGACA GCGTGCAGAGCAAACAGCAGTGTGCGTGTGTGCTCGTCCCTTTTGTTCTC GGCAACGGTCTGAACCTGAACCTTTCGTTATGAAGTGGGTGCACCAGCCG GGGTCACACAGAAGGAAGGTCACACAGACAGGAGCGTTTTTATGTTTTTT TTTGTTTTTTTTGTTTTTTTTTGCAGGCACCTTTTCTCCTGCGGTACCTG TCTTTTTTCGGTTTTTATCCGAGTCGGGCCCAGCAATCCCTTCCCTGTCT CCTCACGAATAAATCGGTTTCCACTGTGTCGCAAGAACACGCTCTCAGAG AGAATCAAACCTGCAACCGCACTACTAGCTGTGCTTCTTTGTAGGGTGAC AAGGGAACCACTAGACCACCGGGGCGACCGCTAGCCCGAAGTTTAATTTG AGACCTGCTGATACTGCTGCATCCGTCATTCGCAACAAGCGCAGGATGGG TCACGTGTCCGCTGCCACACGGACGAAGCCCTCGCTACTGTTGAGTTTCC GCTCGATTTCGGAGATTAACCCTCTTACCCATTGGTAGACAAATGTCGCC ATTTTGGGTCGCCATTTGGCTATTGGTCACTTGGATCACGTGACCCCCAA TAGCTAAACTTTTGCCTCGCTAACCGCTCAATTCTCAAACGCAGTCTATA AGTAAGAGAAATTTTGGCGGCGCGTTCACTTGCTTTTATAGAGCTTTTGT CGAAAAATATTGTTCCCATGACTTTTCACAGGGGGGTAAAAGGGTTAAGA TGTTGAGTAGACCAGGTTCGACGCGCATATTCTCGTGTTTGAATCGCTTC ATGAAAGCACATCCATACGTTTATACGTACTCGCACCTCTCTCTCTCTCT CCCCCCCTCATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCATTCTCTCTCTCGTTCTTCTCTTTCAGGAAAGCTCCAAGCCAGGG GTTTCGGGTGGTGGTAGCGTCAACAGGCAACAACGCGTTCGGCCGCTGGC GATGTCTTCGAGACTACCTGTCGCCCCCGAAGCCGACGCACCGAAAAGGT AAAGTTGCTACCGTAGATGTGTACCTTGGGATCGTAGATCTATACGATGG TACCGCCGTAGATGTGTACGGTGGCACCGTGTAAGTGTAATTTGGTACCG TAAATGTGTACTGCTGTGGCACTCCTGTAGATGTGTCAGGAGGTGAAGAC CTCACTCGGGTAAATGGTTAACCTTTTACCCGATGGCTGAGCTAGCTATT CCTTCACATTTGGCTGATGGCAAGCTATTCCTTCACAGATGTGTGCTCTG ATACCGTAGATCTGTACCGTGGTACAGCAGTACATGTATTCTTCGGTACC TCTTGGGCCTTGGAGTGAGATGTTTTCGAACGAAACAATGCTCGATTCTC CTGTTTTGCAAAGGTTGTCGGCGTTGTCGAGGACGCACACGGGTTGCAGC AGAGTTTGTCGAGGTTTTGAAACGTTTGGCCTCAAGAACGTTAGAGTAGC TGGTCTGAAAATGTATCAGTCGTGTCGTGTAATCGACTGGCATGATTTTG TCGTTCTGCGTCTTGAGAGCTTGGTCGATTATCTCAGTTTTGGGCCGCAT GCTGAGAACGTCTAGTGGTGACGAACCTGCGACAAACTATAGACAAACGC AACACAGTAGTCACACGGCGCGCCGGCTCGCTGCCACTCTCGGACTGCGA ACATTCTTGGAGCTTTCCAATCCGTGGAACCACTCGTCCTAGTCTTGCAC TGTCATTTTCTTGACGAGGAGGGATTGCAGTTTTCTCTCACTTTTTTTCT CACTTTTTTTTTTCTAATTCTCCTTTTATTATTCTTGAATGTTCTTTTCT ACTCTCTTGTAACAGCCTGGCGTTGCCATTCCTTCCTCAACCCGAAGCTC TGGATGGCACCATGATTGGGGACGTTGGCTTCGATCCGCTGGGGCTAGCG ACGCCGGGCAACTTGGATCGGTGAGAGGGCGTGAGCATCACCACTGTATG ATACAGGTGCTGTGGTGTGGGGATGGGGTGTGGGGTGTGTGCGTGCAAAG CCGTCAGCAGCAGCACGCATGGGGCTTGTTGTTGTTGTTGTTGCTGTTGC TCTCGTTGTCGGTTGCTTTGCCTCTGCCGCTTGTTGCGATTGTGTCGTGT CATTTGTTTGTTGTTGGTCGAAGTAGTCTTTTGTGATGGCGGCGGTGCTG CTTTTGACGTGCTGGTGACCGTTCGAGTCGTCGGTGTTTCAATTCACCCT TGAATATTTTTTTGTGCTTGTGTTTGTCATCATGATCGCTGCTGCGGTCG CGGTGGCGGCGGCGGCGGCGGTGTTGTACCGTTGTTGCCTACGCTCGGGT GTCTTTCGTCGCCGCCGCACCGCCTCTCGTCCCTCGCTGATGCTGTGCAT CAGGTACAGAGAGGCGGAGCTGAAGCACGGGCGTTTGGCGATGGTGGCCC TTGCCGGCTGGCCGGTGGCGACGTTACTCCTCGGCCTGCTCACGAAGGTG GGCGTCCAGTTGTGCGCCGGGATGCGCGCGTGTCCTGAATCAAACACCAT CCTCGGTTTGGGAAGAACTGAGACAAGGACAGACAGGAGGACGAACGGGT CCTTCCCGAAATTTCCAGGAACTTTCACTTGTTATCCGGTCGGGGGGGGG GTTCGTCGGGCGTCCTTCCAGCAGGCCTACAAACCTATAGTTCAATCGAC TCTCACGATTGATGATTACAGTAGCTGCACTCATATGTTGCCCATAATTC GTTTGGTGTATGATATCATACTGACAGGTCAACTCACGCCTTTAGATGTA GACTTTGGCGTTTTATGTTTTACCTCTGTGCCGCCTTAAGTCAAAACTTT GGTGTTTTCTGTTTTACCTGTGTGCCGCCTTGAGTTGAAAACTTTGATGT CTTGTGTAACGTTTCGCTGGCGTTGATGCAAGCAGGTTGCTTTGTCACCA CGCCACCACAACAACCTGATCCGTCTTTCGGCTATGGAGAGTTCCTACGA CGTTGGCACCCCTAACGTGCCAGATAAAAGACAGGAAAATACTTCGTTTC ACTTGGTTGGATTTTTGCCAGATTTTAACGCTGCGGGGAGTGTGCACTTT TTCACTGAAAATCAGGGCTGGGCGCCGACCCAACCCAACCCAACCCAACC CAACTCAACCCAACCCTTACCCTAACCCATACTTACGCGGATGAAACCCA CGCGCAGCTTCCCCACGCGGTTTTGGACGTCGTGAAAAAAAACAAAACAA TGCTGAAACAAAAATTGTGCTTTTTTTTCCCACTTTTTGTTTGGTATGTT GAAGATTGCCAAGAGAGCAATGATGAAACAAGAATTGTGCTATTTTTTTT TTCCACTCTTCGTTTGGTATGTTGAAGAAGGTTGCCAAGAGAGACCCGGT TATAAAGTGAGCTGCTATCACACCGAGAGCGTATAAGCGACTGACCGGCA GCCAAATTGATCTGACACTTTTAACCCCCGCCCCTTTTCCCCTTGCGTAA CCCCCCGCGAGGATTGCAGATCGTCCCCCCAGCTTCAGTTTGCACTGGAA ACGGCTGTGCGATCGACCAAACGCTGTCCGGCAGCGCCCTCCCTCTCGAA GGTCGGTGCCGGGGCGCCAGCTGATAGTTCGTTTGTCACAAGTCATAGTG GTTGGTGGCTCTCGCCTCCAATAAGTTCAGAGCTGCAGCATGTACTGGAA TATTCAAAGCTCCCCCAAGAGGACGATGATTGAGTCCTCGCACGCTTTGT GAAGCTGAACGTCGTTGTTCAACCTTTGACGACCCGCTTTTTTTTGCGCG GAGGTCAGTCCGTCCAGTCTGTCAGTAGTGCCAACCGGTCATGCCATCCG TTCTCCACCGTATGTTGCATGCTTCGCGCTTCTAAGTACGAGTACTTTGA AGTGAGAAAACAGCTCCAACTCTTCTGGCCGCGTAGAAAGTCATTGTACA AGTAGACTCGATTCGCCGGCATGGTTGCGCAAGGCGTCCGGGCGTCCGTG GCATGGCGACCACGTGTCACCAGTTGCTACTGTATCTTTCCCTCTGACCC CCCCCCCAATGCGGCGCTTCTAATTTTTAAAGGGGTGGTCGGCCAAGATT TCAAGTGAGGCGAGCAGGAACTGAGCACGCTCCCCCCCCACCCCCCCCTC CATCCCGCGCCCTCGCTGCATTTGTTTTCTCGCAGCAATCGGCAACGTCT CGTTCGCCTACTGGGGGTCGGCGCTTGCTCTCGCGGTCGCGGCGGAACTG ACAGCTGTTCGGCGTAGAAAAAACTCTAACGTCGAACGGTTGCGGAACGG GCCGGACAACTACCGAGCTGGCGATCTCGGTCTCGACCCGTTCGGCTTGG CGGACGATGAGGTGTGACATGAAACGGTAGCGTACGGCGAAGTCCGCGGG TTCATCTGTTGTTTTGAAAAGGGGTGAAGGATTCACAGCGATGGACTATT TTCAGAAGCCTCTACGCGTTGAATAATACACCGCGCATGCGTGATCCCAC CACGCACGTCTCGTGATTAGCCCGATCGTCATCGAGCTCTTGCCTAGCTG GTCTTTCTCCCCTCTTGTCTGCCAACCGTGCATGCTTACTTCTGCCGTAC ACACGAGCTTGTCTGGTGTTTCGGCCATTGCTCGTGGCACACGCTGTTCT CGACCCCGGGCGGAACTGGATGCGCCGTGTGTACGTTCACACAATATTTT TTGGGAAACAAACACGTCGAAATGAATGCAATGAAATGCTGTATTATTCT GTGTGCGCTGTTTGATGCACGACTCGGGAACATCGCCCCGCGCTTACTTA CTAGGCCCCCCATCCCACAGCTTCCACCCGAGGCGACCCCGCGTGTCCAT GGAACCTGCGCGAAACGATCTTTTGGGGCCGTTTGCTCCGTTATTGCGGG TGATTCAAGTGTCAAGCACCCATTCCCCCCGGAGGGTCGTTTGTTGCCCG GTTTGTAGAGCACTCACTTTGTGGACGGCAAGATACGACCAGTTGGATCG GCGCCTGTTGACAACAACTGCAGTCAGGACTGGATCCACCGACCCATCAA CGATTGTTGGGAATGTCTGTTTGTGGTCTAACGAAAGAGTCGCTCGAGAT CTGCGGGCGCGGGGTTTACAAGGGTGTGGCTCACGCCAGAAGAGAGTTGG ATTTTTGCGGGTTCAAGCCTGAGGGCATACATGCGAGTCGTTCGTTATGT TGTTGTCCGACCGTTCTTTTCATCATGAATCAGTCTAGTCCAGCACACCC CCGAAAACAAACCGCAGTTTCCCCCAAAGCAGTCTACTGAGGCACGAAAA GCTCCATCGAAAAAAGACCGGCTGGAAAAGAATGCAAGCGCGGCATGTGC AGAGGGCTATGATATGATGGCACCTATCAACATAAAAGCACCGGTAGCTC CTTGGGGGCCTCCACTCCACCGCTTTGGGTGTTGTCTCGCGTCTTTCAGA AACCTGTCCTTTGCGCTATTATTTTGTTGTTTTATCTGCGATCGTTTCAT GTTGATGACCTCTTGACGCTCACGCTGCAGATGAGGCTGCGCGAGATCAA GCACGGGCGTCTCGCGATGGCGGCCTTCGCTTTCCACTACGCGGGGGTGT TGCTGGAGAAGAAAGGCGTCGTCGTGGGGCACCAGCTCTGGGGGTCGGTG TGCGTCTACAACCTCAAGTGGGGCCTTAGCACGCTGCCACCTCCCATCTG CTACCCGAGACCGGAGGCGGCCTTGGACACAACACTATCTTGGGAGATCA TGTACAGAGTTTTGAGCGGATTTTTCCAGGAACCCTACTACTAGACTAAA AAATTGAGTAGCATGTGCGTGTTGCCATCCTATTTATTGAGTGTAGAGTA TCGTAACATATATAATACCTTGTCGAATTCGCTGCTCAAAGTGCCGATCG CATGCGTGTGTGTCCGTCGTTATCGCTGTCGGAAACCAACTTGTAGAGAA TCGAATCGAGTGAGATGTGACAGGACGGGAGGGCGCGTCGAACGATTTGG AGGTTCGCCACGGATGTTGTCGATACAGTAGTGTCTTGAAGTTGAAGATG TTTATGCCGTTGGCGCGTTCAACAGCGCGGGACACATCTGAGCTAGCATG CCGAGCACCCCGGCGAAGAAGGCCTTTTTGGATTGTTTAGTCCAACTCAT GCATGTCTCATCTTATCTTGTATTTCCTCCCTCTTTTTTATCATCTCGGA AGCCTATTGATCGTTGTTCGTGCTAGCTCTCAACGAGAGAGCGCCTGCGC CAGCAGTAGCCTTGGCGTGGTAGGGTGCAGTTGGGATCACTGCTTGCTTG CTTGCTCCACGCACGCAGTCTGTACGTGGCAGCAGCCGTTAGTATGATAC GAGGGCCATACACGACAGAGTTTATAGCATTCGGAATCGACTTGAAGACC AAACTCGTACAGATGCTGTACAAAGGAGGGCTGTAAGCAAGGCGGGTCGG TACAAAACGTTTTTTAAGAGGTCAAAACGCGAGTTTTTTTTAGTGCGCCC AAAGCACTGTAGGGGCACGGCCTCAAAGCAAAAAGGTTTGCTCGTACCGA TTTTGCCCAGGGTTTGTTGGGCCGCGTTCTTGTCGAGAACATGCGGGACG CCCTTGCCAGAAAGTAGAAAAAGTAACGCACATGGGTGATCCGGGACGAA GATTGGTTCCACTGCCCCCCATTTTCGGTGCTGACGTCTTGCGGCTCCGA CACGCATGATGTCGAGCATGGTAAGTCGGCCCGGCCCGTCTGTACGGTTA TCCGGGGGGTTGTTTTTTGTTTTGAGTATTTTGCTGTCACGCGGCGGTGT ACATCGATCGGTCGGCTCTCGACCATGCAGCCTCTATACGTAGCACGACT GGGTACGTATATGATTGTATGATATGACACGAGTAGTTTCGTGCCCTCGC CAATGTTCTCGATGTCCCCAAAACCGCCTGCTTGAGACCCGGCATCCCGT TGTGAAAGTGCTCCAACTGGTCAGTCATGGACGAAAGAGGATGCTCGAAG AAACGCGTGTAACGTGAAGTTTTTTTTTCAGGTTTTTTGTGGTCAAGAAG TCAGGTGGTGGAACCAATCGATCGGAACAACATCTCACCAATTTTACTGG GCACGTGTCATACAGTACGCACGGCGATTGTTTCGGAGCTCTCCACGAAG AGGTGAGGCCACAAAACGCACACTACCTGGTGTATCGCCGCACGAAGGGG GGGTTGTATATACGCCACGTAGAATACAAATCGAAAGATTTGAAGGAGCC TTTTGTTGCCAGGGGAGGGTCGCCAGACCAGGTGCAGCTAGCTACGCGTG AGGAGTAGTAGTGGGCGGTGACATAATTGTCTGGTTGAACGAGTCGGGGC GTGATGTGGGCAGTGACAAGAATGTCTGGTTGAGAGAGTCGGGGCGGGGG GTGTGGTTACCGGTAGTCAAGCTAGTGTGGTACTCCGGAACGGCGGGGTG CCCTGCGATTTCTGTGTTGAGCAGCAAGCGGGATCACCAGGAACTTTGAG TGCATGACAATGACGATACTGCATCAGGGTCTACATTTTTTGTTTTAGCA GCATCCGCGTCACAGGGCTCCTCGAGCGCATGAAGAACCGACGACCCACA TCGCTACAGGCAGTTCCATGTTTCTTCGTTTTTTCGGCGGCGTGTGAAAA GGCTGACGATAATCTGCACCGCTGGTCCTCTGCTTCCAAGACTCAACCTC TCAAGTCTCACACCAGCAGAATACAGTAGCCCCTGGACCTCTATGTATAG TATGTATTAATGATCGCCTCGGTCAGCGGTACACGCTGCGCATCTGCCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig979:40205..49954-

>mRNA_P-littoralis_Contig979.8.1 ID=mRNA_P-littoralis_Contig979.8.1|Name=mRNA_P-littoralis_Contig979.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=921bp|location=Sequence derived from alignment at P-littoralis_Contig979:40205..49954- (Pylaiella littoralis U1_48)
ATGAGGGTGCTCTTCATATTGTTCTCCTCCGCCTGCATCATGGGCGTTTC
GGCGTTCTTGCCCACGTCCGTACCTCCTCTCGCGGAAAGCTCCAAGCCAG
GGGTTTCGGGTGGTGGTAGCGTCAACAGGCAACAACGCGTTCGGCCGCTG
GCGATGTCTTCGAGACTACCTGTCGCCCCCGAAGCCGACGCACCGAAAAG
CCTGGCGTTGCCATTCCTTCCTCAACCCGAAGCTCTGGATGGCACCATGA
TTGGGGACGTTGGCTTCGATCCGCTGGGGCTAGCGACGCCGGGCAACTTG
GATCGGTACAGAGAGGCGGAGCTGAAGCACGGGCGTTTGGCGATGGTGGC
CCTTGCCGGCTGGCCGGTGGCGACGTTACTCCTCGGCCTGCTCACGAAGA
TCGTCCCCCCAGCTTCAGTTTGCACTGGAAACGGCTGTGCGATCGACCAA
ACGCTGTCCGGCAGCGCCCTCCCTCTCGAAGCAATCGGCAACGTCTCGTT
CGCCTACTGGGGGTCGGCGCTTGCTCTCGCGGTCGCGGCGGAACTGACAG
CTGTTCGGCGTAGAAAAAACTCTAACGTCGAACGGTTGCGGAACGGGCCG
GACAACTACCGAGCTGGCGATCTCGGTCTCGACCCGTTCGGCTTGGCGGA
CGATGAGATGAGGCTGCGCGAGATCAAGCACGGGCGTCTCGCGATGGCGG
CCTTCGCTTTCCACTACGCGGGGGTGTTGCTGGAGAAGAAAGGCGTCGTC
GTGGGGCACCAGCTCTGGGGGTCGGTGTGCGTCTACAACCTCAAGTGGGG
CCTTAGCACGCTGCCACCTCCCATCTGCTACCCGAGACCGGAGGCGGCCT
TGGACACAACACTATCTTGGGAGATCATGTACAGAGTTTTGAGCGGATTT
TTCCAGGAACCCTACTACTAG
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