mRNA_P-littoralis_Contig86.55.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig86.55.1 vs. uniprot
Match: A0A6H5L812_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L812_9PHAE) HSP 1 Score: 152 bits (384), Expect = 5.220e-36 Identity = 147/401 (36.66%), Postives = 193/401 (48.13%), Query Frame = 3
Query: 321 DLNVKFGAKSESALHVAAAQGAEAVATVLAGADPNLRDGGERSPLHVAAAAGHHVIMEKLLLSRVIPDPKIRDDEQTPPSRCEGRPCALCVESLGRRCRQRLP*LRQQHATFQAADGDQHCTVEELLDAGANLDIRNAKDRSVLEKAAEEGHENVVRALLC--GTDVTAKPATVRAVQPYIVPLKHATTA-GSFVR*L-KLGLTSKERRPTTYGDSPLHLFVRKYWYETAYMATMFALVEGGAHFNSANIVDETPLILARACLNVAGVELLLR*RADDKKTIEDGDSAVDCVGDWEQHADFDEGNDSEIQRESDSQGIRHMLTRAPADRSWRRRGWLVLCRSYPTRV*VSAKDSSS----------GGSSTKVAK-AGCDSRRGCDETGDQT-VGTDDLVG 1475
D+NV FG + E A ++ GADPN+RD +RSPLH+AA AGHH ++ LLL+R K + ALC+ L L ++ +A V+ELL AGAN +R RS LE AA G +VV+ALL +V A A Y + G VR L + G + D+ L+L V + A T+ AL+EGGA+ N+ D+TPL +A + + GVELLLR ADDK T G + V +Q D+ +D E+ E+D+Q IR ML R PA RSWRRRGWLVL RS PTRV ++ S G+S KVAK +G S R +ET D V DLVG
Sbjct: 100 DVNVLFGGERE--------------ALMIDGADPNVRDRRKRSPLHLAAVAGHHRVVGMLLLNRACVHAKTAS-QXXXXXXXXXXXXALCISEL----------LLGANSHLEA--------VQELLAAGANYSLRTNGSRSPLEIAANRGQADVVKALLDKDSGEVDATDGGGWAALHYAASIDGPVRDNGDAVRVLLRAGADVSAKGTKDPCDTSLYLAVNR---RIASDGTIRALLEGGANINARIGGDQTPLHVACSRSSAVGVELLLRWGADDKLTTNVGQTPAHVVRALQQ----DDLDDEEL--EADNQRIRRMLARDPAARSWRRRGWLVLSRSCPTRVQIANGSSXXXXXXXXXXXXNGNSAKVAKVSGESSSRDDEETADDMMVDLRDLVG 458
BLAST of mRNA_P-littoralis_Contig86.55.1 vs. uniprot
Match: D8LTL5_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTL5_ECTSI) HSP 1 Score: 148 bits (374), Expect = 1.880e-35 Identity = 150/426 (35.21%), Postives = 184/426 (43.19%), Query Frame = 3
Query: 219 QAGGDAADERYSAQLPMARARRWWWLCSRLAQKP-DLNVKFGAKSESALHVAAAQGAEAVATVL--AGADPNLRDGGERSPLHVAAAAGH-HVIMEKLLLSRVIPDPKIRDDEQTPPSRCEGRPCALCVESLGRRCRQRLP*LRQQHATFQAADGDQHCTVEELLDAGANLDIRNAKDRSVLEKAAEEGHENVVRALLCGTDVTAKPATVRAVQPYIVPLKHATTAGSFVR*LKLGLTSKERRPTTYGDSPLHLFVRKYWYETAYMATMFALVEGGAHFNSANIVDETPLILARACLNVAGVELLLR*RADDKKTIEDGDSAVDCVGDWEQHADFDEGNDSEIQRESDSQGIRHMLTRAPADRSWRRRGWLVLCRSYPTRV*V---SAKDSSSGGSSTKVAKAGCDSRRGC----DETGDQTVGTD 1463
Q+GG+A DE +L ARARRW+ LCS ++ D+N FG +SESALHVAAA+GAE +T L AGADPNLRD RSPLH+AA AGH H+I PC + ELL G A V A GS +PLH+ V + A + T+ AL+EGGA + + +D+TPL A +V GVELLLR AD++ T E+GD+ D VG +A DE EI E D+Q IR ML RAPADRSWRRRG LVL RS PTRV + S+ SS G S AK SR+ +ETGDQ V D
Sbjct: 4 QSGGNAMDEHCWVRLHTARARRWYGLCSPRGRRVIDVNALFGGESESALHVAAARGAEKASTALMIAGADPNLRDRMNRSPLHLAAEAGHRHIIGIXXXXXXXXXXXXXXXXXXXXXXXXXXAPC-----------------------------------ISELL-VGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYPGADV-----------DAEATGSDC------------------STPLHVAVDR---RVASIGTIGALLEGGADIHVFDEIDDTPLHRACKRSSVTGVELLLRRGADEELTNEEGDAPADIVGASPSNATVDE----EI--EVDNQRIRRMLARAPADRSWRRRGLLVLSRSCPTRVQIANRSSSGSSIGSSKGCFAKVSPASRKNSGGDNEETGDQMVMVD 355
BLAST of mRNA_P-littoralis_Contig86.55.1 vs. uniprot
Match: D8LQN0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI) HSP 1 Score: 135 bits (339), Expect = 6.750e-30 Identity = 142/404 (35.15%), Postives = 179/404 (44.31%), Query Frame = 3
Query: 321 DLNVKFGAKSESALHVAAAQGAEAV--ATVLAGADPNLRDGGERSPLHVAAAAGHHVIMEKLLLSRVIPDPKIRDDEQTPPSRCEGRPCALCVESLGRRCRQRLP*LRQQHATFQAADGDQHCTVEELLDAGANLDIR----NAKDRSVLEKAAEEGHENVVRALLC--GTDVTAKPATVRAVQPYIVPLKHATT-AGSFVR*LKLGLTSKERRPTTYGD--SPLHLFVRKYWYETAYMATMFALVEGGAHFNSANIVDETPLILARACLNVAGVELLLR*RADDKKTIEDGDSAVDCVGDWEQHADFDEGNDSEIQRESDSQGIRHMLTRAPADRSWRRRGWLVLCRSYPTRV*VSAKDSSSG------GSSTKVAK-AGCDSRRGCDETGDQT-VGTDDLVG 1475
D+NV FG +SESALHVAAA+GA+ A ++AGADPN+RD RSP AN +R N S LE AA GH +V++ALL ++V A Y+ G VR L LG + T +PLHL V ++ T T+ AL+EGGA+ N+ D+TPL +A L + VELLLR AD+K DGD+ D VG EQ+ DE +RE+D+Q I ML RAPADRSWRRRGWLVL RS PTRV ++ SSS G+S KVA+ +G S R +ET DQ V DLVG
Sbjct: 100 DVNVLFGGESESALHVAAARGADDTCRALMIAGADPNVRDRVGRSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANCGLRSMCTNGSRCSPLEIAAGRGHADVLKALLDKRSSEVDTANDLGWAALHYVASFDETVRDKGDAVRVL-LGAGADVNVKGTNDSCATPLHLAVNRWMTSTG---TICALLEGGANINARTAGDDTPLHIACTRLRGSVVELLLRWGADEKLPNNDGDTPADVVGVLEQNDLDDE------EREADNQRIHRMLARAPADRSWRRRGWLVLSRSCPTRVHIANGSSSSSSISRINGNSAKVARVSGQGSSRDDEETEDQMMVDLRDLVG 493
BLAST of mRNA_P-littoralis_Contig86.55.1 vs. uniprot
Match: D8LQE2_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQE2_ECTSI) HSP 1 Score: 116 bits (291), Expect = 1.590e-26 Identity = 59/83 (71.08%), Postives = 70/83 (84.34%), Query Frame = 2
Query: 71 FEIEIFELLKQEATSEQWKEWLRAPLEHAMSKGNMDLFARLMETGADGSAGWRGCCGRTLLGSAAHGT-SKKMVVALLKAGAK 316
FEIEIF+L+K+EA EQWK+W RAPLEHA ++GN+DLF RLM+ GADG AGWRGC GRTLLG+AA G S KMV ALL+AGA+
Sbjct: 16 FEIEIFKLVKEEAAPEQWKQWFRAPLEHATARGNLDLFTRLMDAGADGEAGWRGCHGRTLLGAAACGNNSDKMVRALLEAGAR 98
BLAST of mRNA_P-littoralis_Contig86.55.1 vs. uniprot
Match: D7G6Z7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Z7_ECTSI) HSP 1 Score: 110 bits (276), Expect = 1.720e-25 Identity = 53/77 (68.83%), Postives = 65/77 (84.42%), Query Frame = 2
Query: 83 IFELLKQEATSEQWKEWLRAPLEHAMSKGNMDLFARLMETGADGSAGWRGCCGRTLLGSAAHGTSKKMVVALLKAGA 313
IF+L+++EAT EQWK+WLR PLEHA +KGN+DLF RLM+ GADG +GWRGC GRTLLG+AA G +MV ALL+AGA
Sbjct: 4 IFKLVQEEATPEQWKQWLRVPLEHAAAKGNLDLFTRLMDAGADGCSGWRGCYGRTLLGAAACGDGDQMVRALLEAGA 80
BLAST of mRNA_P-littoralis_Contig86.55.1 vs. uniprot
Match: A0A6H5L7E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7E1_9PHAE) HSP 1 Score: 123 bits (308), Expect = 2.890e-25 Identity = 144/428 (33.64%), Postives = 189/428 (44.16%), Query Frame = 3
Query: 321 DLNVKFGAKSESALHVAAAQGAE--AVATVLAGADPNLRDGGERSP------------------LHVAAAAGHHVIMEKLLLSRVIPDPKIRDDEQTPP---SRCEGRPCALCVESLGRRCRQRLP*LRQQHATFQAADGDQHCTVEELLDAGANLDIR---NAKDRSVLEKAAEEGHENVVRALLCGTDVTAKPATVRAVQPYIVPLKHATTAGSFVR*LKLGLTSKERRPTTYG--DSPLHLFVRKYWYETAYMATMFALVEGGAHFNSANIVDETPLILARACLNVAGVELLLR*RADDKKTIEDGDSAVDCVGDWEQHADFDEGNDSEIQRESDSQGIRHMLTRAPADRSWRRRGWLVLCRSYPTRV*VSAKDSSS-------------GGSSTKVAKAGCDSRRGCDET--GDQTVGTDDLVG 1475
D NV FG + ESALHV A+GAE A ++AGADP LRD G+ + + VAA AGHH ++ LLL+R D + Q+ P + EGR ALC+ L L + +A V+ELL AGAN +R S L+ AA GH +V+ ALL ++ + V G VR L LG+ + TT SPLHL V + A + D PL LA +V GVELLLR AD+K T G + D + +Q G+ + +RE+D Q I M+ PADRSWRRRGWLVL RS PTRV ++ S G++ KVA+ +S DE GD V +LVG
Sbjct: 76 DANVLFGVEHESALHVVLARGAEDSCRALMIAGADPTLRDRGDDTRWFKEMDTRIFNMTSVIERIWVAAVAGHHRVIGSLLLNRA--DVHAKTASQSTPLHLAASEGR--ALCLSEL----------LLGANNHLEA--------VQELLAAGANCGLRCMLTNGSHSSLDMAAGRGHADVLTALLDKDNIFFAMSVDGPVHDN----------GDAVRAL-LGVGADVNAKTTDSICASPLHLAVDR---RIASDGMIXXXXXXXXXXXXXXGDDNKPLHLACRHSSVHGVELLLRWGADEKLTNSVGKTPADVIRALQQ------GDLDDKEREADDQRIGRMVALVPADRSWRRRGWLVLSRSCPTRVQIANGSSXXXXXXXXXXXXXRINGNAAKVARVSGESSSRDDERTEGDMIVDLRNLVG 461
BLAST of mRNA_P-littoralis_Contig86.55.1 vs. uniprot
Match: D8LD22_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD22_ECTSI) HSP 1 Score: 112 bits (279), Expect = 3.670e-22 Identity = 55/82 (67.07%), Postives = 68/82 (82.93%), Query Frame = 2
Query: 71 FEIEIFELLKQEATSEQWKEWLRAPLEHAMSKGNMDLFARLMETGADGSAGWRGCCGRTLLGSAAHGTSKKMVVALLKAGAK 316
FE+EIF+L+++EATS+QWKEWLRAPLEHA + GN+ LF RLM+ GA AGWRGC GRTLLG+AA +KK++ ALL AGAK
Sbjct: 19 FEVEIFKLVQREATSKQWKEWLRAPLEHAAASGNLGLFTRLMDAGASAEAGWRGCDGRTLLGAAACSKNKKILRALLTAGAK 100
BLAST of mRNA_P-littoralis_Contig86.55.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE) HSP 1 Score: 113 bits (282), Expect = 6.190e-22 Identity = 53/80 (66.25%), Postives = 67/80 (83.75%), Query Frame = 2
Query: 71 FEIEIFELLKQEATSEQWKEWLRAPLEHAMSKGNMDLFARLMETGADGSAGWRGCCGRTLLGSAAHGTSKKMVVALLKAG 310
FE+EI EL+++ ATSEQW++WLR PLEHA +KGN+DLF RLM+ G+ G GWRGC GRTLLG+ A+G S+KMV ALL+AG
Sbjct: 17 FEVEIVELVREGATSEQWRQWLRIPLEHAAAKGNLDLFTRLMDAGSSGEPGWRGCNGRTLLGATAYGESEKMVRALLEAG 96
BLAST of mRNA_P-littoralis_Contig86.55.1 vs. uniprot
Match: D8LQE9_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQE9_ECTSI) HSP 1 Score: 105 bits (261), Expect = 7.670e-22 Identity = 56/83 (67.47%), Postives = 67/83 (80.72%), Query Frame = 2
Query: 71 FEIEIFELLKQEATSEQWKEWLRAPLEHAMSKGNMDLFARLMETGADGSAGWRG--CCGRTLLGSAAHGT-SKKMVVALLKAG 310
FEIEIF+L+K+EAT+ QWK+WLR PLEHA +KGN+DLF RLM+ GA G GWRG C RTLLG+AA GT S KM+ ALL+AG
Sbjct: 14 FEIEIFKLVKEEATAGQWKQWLRTPLEHAAAKGNLDLFTRLMDAGAGGEPGWRGWGCHERTLLGAAACGTKSDKMIWALLEAG 96
BLAST of mRNA_P-littoralis_Contig86.55.1 vs. uniprot
Match: D7G692_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G692_ECTSI) HSP 1 Score: 110 bits (276), Expect = 1.120e-21 Identity = 51/76 (67.11%), Postives = 68/76 (89.47%), Query Frame = 2
Query: 74 EIEIFELLKQEATSEQWKEWLRAPLEHAMSKGNMDLFARLMETGADGSAGWRGCCGRTLLGSAAHGTSKKMVVALL 301
E+EIF+L++++ATS QW+EWLRAPLEHA ++GN+DLF RLM+ GADGSAGWRGC GRTLLG+AA+G ++++V LL
Sbjct: 69 EVEIFKLVREQATSMQWREWLRAPLEHAAAEGNIDLFTRLMDAGADGSAGWRGCHGRTLLGAAAYGKNEEIVERLL 144 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig86.55.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig86.55.1 >prot_P-littoralis_Contig86.55.1 ID=prot_P-littoralis_Contig86.55.1|Name=mRNA_P-littoralis_Contig86.55.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=122bp MARARRWWWLCSRLAQKPDLNVKFGAKSESALHVAAAQGAEAVATVLAGAback to top mRNA from alignment at P-littoralis_Contig86:141997..145107- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig86.55.1 ID=mRNA_P-littoralis_Contig86.55.1|Name=mRNA_P-littoralis_Contig86.55.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3111bp|location=Sequence derived from alignment at P-littoralis_Contig86:141997..145107- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig86:141997..145107- >mRNA_P-littoralis_Contig86.55.1 ID=mRNA_P-littoralis_Contig86.55.1|Name=mRNA_P-littoralis_Contig86.55.1|organism=Pylaiella littoralis U1_48|type=CDS|length=366bp|location=Sequence derived from alignment at P-littoralis_Contig86:141997..145107- (Pylaiella littoralis U1_48)back to top |