mRNA_P-littoralis_Contig86.55.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig86.55.1
Unique NamemRNA_P-littoralis_Contig86.55.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig86.55.1 vs. uniprot
Match: A0A6H5L812_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L812_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 5.220e-36
Identity = 147/401 (36.66%), Postives = 193/401 (48.13%), Query Frame = 3
Query:  321 DLNVKFGAKSESALHVAAAQGAEAVATVLAGADPNLRDGGERSPLHVAAAAGHHVIMEKLLLSRVIPDPKIRDDEQTPPSRCEGRPCALCVESLGRRCRQRLP*LRQQHATFQAADGDQHCTVEELLDAGANLDIRNAKDRSVLEKAAEEGHENVVRALLC--GTDVTAKPATVRAVQPYIVPLKHATTA-GSFVR*L-KLGLTSKERRPTTYGDSPLHLFVRKYWYETAYMATMFALVEGGAHFNSANIVDETPLILARACLNVAGVELLLR*RADDKKTIEDGDSAVDCVGDWEQHADFDEGNDSEIQRESDSQGIRHMLTRAPADRSWRRRGWLVLCRSYPTRV*VSAKDSSS----------GGSSTKVAK-AGCDSRRGCDETGDQT-VGTDDLVG 1475
            D+NV FG + E              A ++ GADPN+RD  +RSPLH+AA AGHH ++  LLL+R     K    +            ALC+  L          L   ++  +A        V+ELL AGAN  +R    RS LE AA  G  +VV+ALL     +V A      A   Y   +       G  VR L + G     +      D+ L+L V +     A   T+ AL+EGGA+ N+    D+TPL +A +  +  GVELLLR  ADDK T   G +    V   +Q    D+ +D E+  E+D+Q IR ML R PA RSWRRRGWLVL RS PTRV ++   S             G+S KVAK +G  S R  +ET D   V   DLVG
Sbjct:  100 DVNVLFGGERE--------------ALMIDGADPNVRDRRKRSPLHLAAVAGHHRVVGMLLLNRACVHAKTAS-QXXXXXXXXXXXXALCISEL----------LLGANSHLEA--------VQELLAAGANYSLRTNGSRSPLEIAANRGQADVVKALLDKDSGEVDATDGGGWAALHYAASIDGPVRDNGDAVRVLLRAGADVSAKGTKDPCDTSLYLAVNR---RIASDGTIRALLEGGANINARIGGDQTPLHVACSRSSAVGVELLLRWGADDKLTTNVGQTPAHVVRALQQ----DDLDDEEL--EADNQRIRRMLARDPAARSWRRRGWLVLSRSCPTRVQIANGSSXXXXXXXXXXXXNGNSAKVAKVSGESSSRDDEETADDMMVDLRDLVG 458          
BLAST of mRNA_P-littoralis_Contig86.55.1 vs. uniprot
Match: D8LTL5_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTL5_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 1.880e-35
Identity = 150/426 (35.21%), Postives = 184/426 (43.19%), Query Frame = 3
Query:  219 QAGGDAADERYSAQLPMARARRWWWLCSRLAQKP-DLNVKFGAKSESALHVAAAQGAEAVATVL--AGADPNLRDGGERSPLHVAAAAGH-HVIMEKLLLSRVIPDPKIRDDEQTPPSRCEGRPCALCVESLGRRCRQRLP*LRQQHATFQAADGDQHCTVEELLDAGANLDIRNAKDRSVLEKAAEEGHENVVRALLCGTDVTAKPATVRAVQPYIVPLKHATTAGSFVR*LKLGLTSKERRPTTYGDSPLHLFVRKYWYETAYMATMFALVEGGAHFNSANIVDETPLILARACLNVAGVELLLR*RADDKKTIEDGDSAVDCVGDWEQHADFDEGNDSEIQRESDSQGIRHMLTRAPADRSWRRRGWLVLCRSYPTRV*V---SAKDSSSGGSSTKVAKAGCDSRRGC----DETGDQTVGTD 1463
            Q+GG+A DE    +L  ARARRW+ LCS   ++  D+N  FG +SESALHVAAA+GAE  +T L  AGADPNLRD   RSPLH+AA AGH H+I                             PC                                   + ELL  G                                       A V            A   GS                     +PLH+ V +     A + T+ AL+EGGA  +  + +D+TPL  A    +V GVELLLR  AD++ T E+GD+  D VG    +A  DE    EI  E D+Q IR ML RAPADRSWRRRG LVL RS PTRV +   S+  SS G S    AK    SR+      +ETGDQ V  D
Sbjct:    4 QSGGNAMDEHCWVRLHTARARRWYGLCSPRGRRVIDVNALFGGESESALHVAAARGAEKASTALMIAGADPNLRDRMNRSPLHLAAEAGHRHIIGIXXXXXXXXXXXXXXXXXXXXXXXXXXAPC-----------------------------------ISELL-VGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYPGADV-----------DAEATGSDC------------------STPLHVAVDR---RVASIGTIGALLEGGADIHVFDEIDDTPLHRACKRSSVTGVELLLRRGADEELTNEEGDAPADIVGASPSNATVDE----EI--EVDNQRIRRMLARAPADRSWRRRGLLVLSRSCPTRVQIANRSSSGSSIGSSKGCFAKVSPASRKNSGGDNEETGDQMVMVD 355          
BLAST of mRNA_P-littoralis_Contig86.55.1 vs. uniprot
Match: D8LQN0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 6.750e-30
Identity = 142/404 (35.15%), Postives = 179/404 (44.31%), Query Frame = 3
Query:  321 DLNVKFGAKSESALHVAAAQGAEAV--ATVLAGADPNLRDGGERSPLHVAAAAGHHVIMEKLLLSRVIPDPKIRDDEQTPPSRCEGRPCALCVESLGRRCRQRLP*LRQQHATFQAADGDQHCTVEELLDAGANLDIR----NAKDRSVLEKAAEEGHENVVRALLC--GTDVTAKPATVRAVQPYIVPLKHATT-AGSFVR*LKLGLTSKERRPTTYGD--SPLHLFVRKYWYETAYMATMFALVEGGAHFNSANIVDETPLILARACLNVAGVELLLR*RADDKKTIEDGDSAVDCVGDWEQHADFDEGNDSEIQRESDSQGIRHMLTRAPADRSWRRRGWLVLCRSYPTRV*VSAKDSSSG------GSSTKVAK-AGCDSRRGCDETGDQT-VGTDDLVG 1475
            D+NV FG +SESALHVAAA+GA+    A ++AGADPN+RD   RSP                                                                                      AN  +R    N    S LE AA  GH +V++ALL    ++V        A   Y+          G  VR L LG  +      T     +PLHL V ++   T    T+ AL+EGGA+ N+    D+TPL +A   L  + VELLLR  AD+K    DGD+  D VG  EQ+   DE      +RE+D+Q I  ML RAPADRSWRRRGWLVL RS PTRV ++   SSS       G+S KVA+ +G  S R  +ET DQ  V   DLVG
Sbjct:  100 DVNVLFGGESESALHVAAARGADDTCRALMIAGADPNVRDRVGRSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANCGLRSMCTNGSRCSPLEIAAGRGHADVLKALLDKRSSEVDTANDLGWAALHYVASFDETVRDKGDAVRVL-LGAGADVNVKGTNDSCATPLHLAVNRWMTSTG---TICALLEGGANINARTAGDDTPLHIACTRLRGSVVELLLRWGADEKLPNNDGDTPADVVGVLEQNDLDDE------EREADNQRIHRMLARAPADRSWRRRGWLVLSRSCPTRVHIANGSSSSSSISRINGNSAKVARVSGQGSSRDDEETEDQMMVDLRDLVG 493          
BLAST of mRNA_P-littoralis_Contig86.55.1 vs. uniprot
Match: D8LQE2_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQE2_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 1.590e-26
Identity = 59/83 (71.08%), Postives = 70/83 (84.34%), Query Frame = 2
Query:   71 FEIEIFELLKQEATSEQWKEWLRAPLEHAMSKGNMDLFARLMETGADGSAGWRGCCGRTLLGSAAHGT-SKKMVVALLKAGAK 316
            FEIEIF+L+K+EA  EQWK+W RAPLEHA ++GN+DLF RLM+ GADG AGWRGC GRTLLG+AA G  S KMV ALL+AGA+
Sbjct:   16 FEIEIFKLVKEEAAPEQWKQWFRAPLEHATARGNLDLFTRLMDAGADGEAGWRGCHGRTLLGAAACGNNSDKMVRALLEAGAR 98          
BLAST of mRNA_P-littoralis_Contig86.55.1 vs. uniprot
Match: D7G6Z7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Z7_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 1.720e-25
Identity = 53/77 (68.83%), Postives = 65/77 (84.42%), Query Frame = 2
Query:   83 IFELLKQEATSEQWKEWLRAPLEHAMSKGNMDLFARLMETGADGSAGWRGCCGRTLLGSAAHGTSKKMVVALLKAGA 313
            IF+L+++EAT EQWK+WLR PLEHA +KGN+DLF RLM+ GADG +GWRGC GRTLLG+AA G   +MV ALL+AGA
Sbjct:    4 IFKLVQEEATPEQWKQWLRVPLEHAAAKGNLDLFTRLMDAGADGCSGWRGCYGRTLLGAAACGDGDQMVRALLEAGA 80          
BLAST of mRNA_P-littoralis_Contig86.55.1 vs. uniprot
Match: A0A6H5L7E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7E1_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 2.890e-25
Identity = 144/428 (33.64%), Postives = 189/428 (44.16%), Query Frame = 3
Query:  321 DLNVKFGAKSESALHVAAAQGAE--AVATVLAGADPNLRDGGERSP------------------LHVAAAAGHHVIMEKLLLSRVIPDPKIRDDEQTPP---SRCEGRPCALCVESLGRRCRQRLP*LRQQHATFQAADGDQHCTVEELLDAGANLDIR---NAKDRSVLEKAAEEGHENVVRALLCGTDVTAKPATVRAVQPYIVPLKHATTAGSFVR*LKLGLTSKERRPTTYG--DSPLHLFVRKYWYETAYMATMFALVEGGAHFNSANIVDETPLILARACLNVAGVELLLR*RADDKKTIEDGDSAVDCVGDWEQHADFDEGNDSEIQRESDSQGIRHMLTRAPADRSWRRRGWLVLCRSYPTRV*VSAKDSSS-------------GGSSTKVAKAGCDSRRGCDET--GDQTVGTDDLVG 1475
            D NV FG + ESALHV  A+GAE    A ++AGADP LRD G+ +                   + VAA AGHH ++  LLL+R   D   +   Q+ P   +  EGR  ALC+  L          L   +   +A        V+ELL AGAN  +R        S L+ AA  GH +V+ ALL   ++    +    V             G  VR L LG+ +     TT     SPLHL V +     A    +                D  PL LA    +V GVELLLR  AD+K T   G +  D +   +Q      G+  + +RE+D Q I  M+   PADRSWRRRGWLVL RS PTRV ++   S                G++ KVA+   +S    DE   GD  V   +LVG
Sbjct:   76 DANVLFGVEHESALHVVLARGAEDSCRALMIAGADPTLRDRGDDTRWFKEMDTRIFNMTSVIERIWVAAVAGHHRVIGSLLLNRA--DVHAKTASQSTPLHLAASEGR--ALCLSEL----------LLGANNHLEA--------VQELLAAGANCGLRCMLTNGSHSSLDMAAGRGHADVLTALLDKDNIFFAMSVDGPVHDN----------GDAVRAL-LGVGADVNAKTTDSICASPLHLAVDR---RIASDGMIXXXXXXXXXXXXXXGDDNKPLHLACRHSSVHGVELLLRWGADEKLTNSVGKTPADVIRALQQ------GDLDDKEREADDQRIGRMVALVPADRSWRRRGWLVLSRSCPTRVQIANGSSXXXXXXXXXXXXXRINGNAAKVARVSGESSSRDDERTEGDMIVDLRNLVG 461          
BLAST of mRNA_P-littoralis_Contig86.55.1 vs. uniprot
Match: D8LD22_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD22_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 3.670e-22
Identity = 55/82 (67.07%), Postives = 68/82 (82.93%), Query Frame = 2
Query:   71 FEIEIFELLKQEATSEQWKEWLRAPLEHAMSKGNMDLFARLMETGADGSAGWRGCCGRTLLGSAAHGTSKKMVVALLKAGAK 316
            FE+EIF+L+++EATS+QWKEWLRAPLEHA + GN+ LF RLM+ GA   AGWRGC GRTLLG+AA   +KK++ ALL AGAK
Sbjct:   19 FEVEIFKLVQREATSKQWKEWLRAPLEHAAASGNLGLFTRLMDAGASAEAGWRGCDGRTLLGAAACSKNKKILRALLTAGAK 100          
BLAST of mRNA_P-littoralis_Contig86.55.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 6.190e-22
Identity = 53/80 (66.25%), Postives = 67/80 (83.75%), Query Frame = 2
Query:   71 FEIEIFELLKQEATSEQWKEWLRAPLEHAMSKGNMDLFARLMETGADGSAGWRGCCGRTLLGSAAHGTSKKMVVALLKAG 310
            FE+EI EL+++ ATSEQW++WLR PLEHA +KGN+DLF RLM+ G+ G  GWRGC GRTLLG+ A+G S+KMV ALL+AG
Sbjct:   17 FEVEIVELVREGATSEQWRQWLRIPLEHAAAKGNLDLFTRLMDAGSSGEPGWRGCNGRTLLGATAYGESEKMVRALLEAG 96          
BLAST of mRNA_P-littoralis_Contig86.55.1 vs. uniprot
Match: D8LQE9_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQE9_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 7.670e-22
Identity = 56/83 (67.47%), Postives = 67/83 (80.72%), Query Frame = 2
Query:   71 FEIEIFELLKQEATSEQWKEWLRAPLEHAMSKGNMDLFARLMETGADGSAGWRG--CCGRTLLGSAAHGT-SKKMVVALLKAG 310
            FEIEIF+L+K+EAT+ QWK+WLR PLEHA +KGN+DLF RLM+ GA G  GWRG  C  RTLLG+AA GT S KM+ ALL+AG
Sbjct:   14 FEIEIFKLVKEEATAGQWKQWLRTPLEHAAAKGNLDLFTRLMDAGAGGEPGWRGWGCHERTLLGAAACGTKSDKMIWALLEAG 96          
BLAST of mRNA_P-littoralis_Contig86.55.1 vs. uniprot
Match: D7G692_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G692_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 1.120e-21
Identity = 51/76 (67.11%), Postives = 68/76 (89.47%), Query Frame = 2
Query:   74 EIEIFELLKQEATSEQWKEWLRAPLEHAMSKGNMDLFARLMETGADGSAGWRGCCGRTLLGSAAHGTSKKMVVALL 301
            E+EIF+L++++ATS QW+EWLRAPLEHA ++GN+DLF RLM+ GADGSAGWRGC GRTLLG+AA+G ++++V  LL
Sbjct:   69 EVEIFKLVREQATSMQWREWLRAPLEHAAAEGNIDLFTRLMDAGADGSAGWRGCHGRTLLGAAAYGKNEEIVERLL 144          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig86.55.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L812_9PHAE5.220e-3636.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTL5_ECTSI1.880e-3535.21MHC_I C-terminus family protein n=1 Tax=Ectocarpus... [more]
D8LQN0_ECTSI6.750e-3035.15Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo... [more]
D8LQE2_ECTSI1.590e-2671.08Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G6Z7_ECTSI1.720e-2568.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7E1_9PHAE2.890e-2533.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD22_ECTSI3.670e-2267.07MHC_I C-terminus family protein n=1 Tax=Ectocarpus... [more]
A0A6H5JHY5_9PHAE6.190e-2266.25Integrase catalytic domain-containing protein n=2 ... [more]
D8LQE9_ECTSI7.670e-2267.47Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ecto... [more]
D7G692_ECTSI1.120e-2167.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig86contigP-littoralis_Contig86:141997..145107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LTL5
PFAMsPkinase,Pkinase_Tyr
Model size2167
Max annot lvl2759|Eukaryota
KEGG koko:K04417
KEGG Pathwayko04013,map04013
KEGG ModuleM00688,M00689
Hectar predicted targeting categorymitochondrion
Exons2
Evalue1.04e-16
EggNOG OGsCOG0515@1|root,KOG0192@2759|Eukaryota
EC2.7.11.25
Descriptionprotein kinase activity
Cds size366
COG categoryKLT
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791731.1290421-UTR-P-littoralis_Contig86:141996..1426331680791731.1290421-UTR-P-littoralis_Contig86:141996..142633Pylaiella littoralis U1_48UTRP-littoralis_Contig86 141997..142633 -
1680791731.142328-UTR-P-littoralis_Contig86:143577..1444751680791731.142328-UTR-P-littoralis_Contig86:143577..144475Pylaiella littoralis U1_48UTRP-littoralis_Contig86 143578..144475 -
1680791731.1634347-UTR-P-littoralis_Contig86:144841..1451071680791731.1634347-UTR-P-littoralis_Contig86:144841..145107Pylaiella littoralis U1_48UTRP-littoralis_Contig86 144842..145107 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791731.1528907-CDS-P-littoralis_Contig86:144475..1448411680791731.1528907-CDS-P-littoralis_Contig86:144475..144841Pylaiella littoralis U1_48CDSP-littoralis_Contig86 144476..144841 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig86.55.1prot_P-littoralis_Contig86.55.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig86 144476..144841 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig86.55.1

>prot_P-littoralis_Contig86.55.1 ID=prot_P-littoralis_Contig86.55.1|Name=mRNA_P-littoralis_Contig86.55.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=122bp
MARARRWWWLCSRLAQKPDLNVKFGAKSESALHVAAAQGAEAVATVLAGA
DPNLRDGGERSPLHVAAAAGHHVIMEKLLLSRVIPDPKIRDDEQTPPSRC
EGRPCALCVESLGRRCRQRLP*
back to top

mRNA from alignment at P-littoralis_Contig86:141997..145107-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig86.55.1 ID=mRNA_P-littoralis_Contig86.55.1|Name=mRNA_P-littoralis_Contig86.55.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3111bp|location=Sequence derived from alignment at P-littoralis_Contig86:141997..145107- (Pylaiella littoralis U1_48)
GGAATGACCTGGAATAGCGAATCTACGCTGTTCCTTGGTGGAACAGAGGA ATGTTGAAGATCGTGCATGCTTTGAGATCGAGATTTTTGAACTCCTCAAG CAGGAGGCGACCTCGGAGCAGTGGAAGGAATGGCTTCGAGCCCCGCTAGA GCATGCCATGTCCAAGGGCAACATGGATCTCTTCGCGAGGCTGATGGAAA CTGGGGCCGACGGAAGTGCAGGCTGGCGGGGATGCTGCGGACGAACGTTA CTCGGCTCAGCTGCCCATGGCACGAGCAAGAAGATGGTGGTGGCTCTGCT CAAGGCTGGCGCAAAAGCCTGACCTGAACGTCAAGTTCGGAGCGAAGAGC GAGTCTGCACTGCACGTAGCAGCGGCACAGGGTGCAGAGGCCGTGGCTAC GGTGCTTGCTGGAGCAGACCCAAACTTGCGGGATGGGGGAGAGCGCAGCC CGCTTCACGTCGCAGCTGCAGCAGGTCATCATGTCATCATGGAGAAACTG CTGCTCAGTCGCGTTATCCCTGATCCGAAGATCCGGGACGACGAGCAGAC ACCTCCATCTCGCTGCGAAGGAAGGCCATGCGCTTTGTGTGTCGAATCTT TAGGCAGGAGGTGCAGACAAAGACTCCCTTGACTGCGGCAACAACACGCC ACTTTTCAGGCGGCCGACGGCGACCAGCACTGCACGGTCGAAGAGCTCTT GGATGCTGGTGCCAACCTCGATATTCGCAATGCCAAGGACAGGTCTGTGT TGGAGAAAGCTGCCGAGGAGGGTCATGAGAACGTCGTGAGAGCACTTCTC TGCGGCACGGATGTGACAGCAAAGCCTGCTACAGTGAGGGCCGTACAGCC CTACATCGTGCCGCTCAAGCATGCGACAACGGCGGGGTCATTCGTGCGTT GATTGAAGCTGGGGCTGACATCGAAAGAAAGACGGCCGACCACCTATGGC GATTCACCGCTGCACCTCTTTGTCCGCAAATACTGGTACGAAACGGCATA CATGGCCACGATGTTTGCCCTAGTGGAGGGTGGGGCTCACTTCAATTCGG CCAACATAGTCGATGAGACGCCGCTTATCCTAGCTCGTGCCTGTTTAAAT GTGGCTGGTGTGGAGCTTCTGCTGCGGTGAAGAGCAGACGATAAGAAAAC AATCGAAGATGGAGATTCGGCGGTAGACTGTGTGGGAGACTGGGAACAAC ACGCCGATTTTGACGAAGGCAACGATAGCGAGATACAACGAGAGAGCGAC AGTCAGGGCATTCGCCACATGTTGACACGCGCTCCTGCCGACAGATCCTG GCGTCGCCGCGGCTGGCTGGTGCTGTGCCGTTCCTACCCAACCAGGGTTT AGGTTTCGGCGAAGGATAGCAGCAGTGGTGGCAGCTCCACGAAGGTGGCA AAGGCTGGCTGCGATTCGAGGCGGGGATGCGACGAGACTGGTGACCAGAC AGTTGGCACGGACGATTTGGTGGGGAGTGGTTGGCCTCGAGGAGGAGGGC GTCTTCCGCTTGGTGGTGGGATGTCTTGAGGTACGAGAGTGATGTCAACT GGTGGCGGCGGCTATTTCATCGGTATGAGAAGTTGTTGTGTAGAGCACGT GTCGTTTTGGGTATTGTACAGCAGTGCAAAACTCGCGAACGCTCTTTGTA CCGCTATACGTTTGCACGAAGTGGCTGATTTGTACGGGGGCTCGACAGCT ATAAGCGAATCGAAGTGCGTGGCTGCAATAATCAGAATACCACGTTGTTG ATCGCAAAACTGGCAAGTATTGGCTCTGACCAAGCAAGATGTAACTGTGG ATACAGTACCGGCCCGCTAATAAGAAACCAGTAAATCTGGCTCAGGCTGA CTTCTTGTGTTGGGTTGAAAGTCGAGCATGACCCTTTCTTATGTATTGTA TAGGATTGAGTGTAGCACTCGCCGCCCAGGCTGGGCACTTTCTTAATTTT CTGAAAATCTCAGGCTGACTTTCTTAAAAGGAGCTTTCTTATGAGCGGGC CGGTACTGTATCCCCTTGTCGTGGCACAGCAGATTCCGTTGTCCCTCACC CGAAAACGTTTTGGTGTTGGACACCAGGTGCTTATTTCTTGTTGTCGTTT CATCCACAATTTTGGTCGCCCTATGATATGTTCCGTTTTTGACCGCCTGC ATGCCGTGACGATTCAATATCCGTTGGGGATGTGCCAGGCACACCATTGA TAAAGAGGTGAATGTAGCTGTTGGGTGTGTCTACCCGAAGACCTACAAAC GCTTCTGTAGCAGTGCATATCATTCGTGCCCCAATCCGTGAGTTCCATGC CAAGGTGGTGGGTAGTATTTTGGTTTCAACCTTTATTCTACTCTCTCTCT CTCCGCGTCCCTTTGTCCTCATTCGACGAAACAATGAAACGAGCATGTGC CCCGTTCGGTATTTGTTGAACAAGCCACGTTATTTTGCTATGCTTTCCCA ATCACCACCGCTGCCCAACGTTAGGTTTCAAGTGCAAAACAATGTCGGGG CGATGCTGATTGGCCTGCCAGAAGGGCTGGCCGCGGAAACGCCACGGTGG TACCGATGACAGCTTGACTGTCGGTGCCGAATATGGTACTGTGTACCAAC CGACCGGATCTTGACAAGTTTTTTATCTCCAGTGGCGTTTAGTGTAGGTG GTTGCAATTTTCTAGTCAGGATTGTTGTTGGGGCGTGCGTTTAGGCAACA CGATTTGGGAAAAGCTGTCCTGATCGGCGCCTGAGTTTGTAGTTTTTCGC GAGTGTGAGGAGTCGCTGCAACTCAAGTGCAAGGTGCAAGGTGAAATATC ATCCGCCTTAGCACGGGGTTGGCATTTCGGATCCTCTAGTATATGCCGGC GCTATGATATGCTGCTTTTCTTTCACAGCCTCAACGTTGTCTGCCACGTA TCGGCCACCTTTACGGCGGAGCACATTTTCGCTCTGCTGCTGTGTCCAGG ATGTTTGAGCTGTTGCCGGCAAAGCACCAGACACTTGCCCTTTTCATCAA ACCAATACATTCAAGTCAAATCGAACATTTTTGTTCAGCTCCCCGCTCCG AGGTGACCCAGATCTTGTTGTTCGGACATCCCTTCTCTGCTTGATTGAGC TGAGCGACGGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig86:141997..145107-

>mRNA_P-littoralis_Contig86.55.1 ID=mRNA_P-littoralis_Contig86.55.1|Name=mRNA_P-littoralis_Contig86.55.1|organism=Pylaiella littoralis U1_48|type=CDS|length=366bp|location=Sequence derived from alignment at P-littoralis_Contig86:141997..145107- (Pylaiella littoralis U1_48)
ATGGCACGAGCAAGAAGATGGTGGTGGCTCTGCTCAAGGCTGGCGCAAAA
GCCTGACCTGAACGTCAAGTTCGGAGCGAAGAGCGAGTCTGCACTGCACG
TAGCAGCGGCACAGGGTGCAGAGGCCGTGGCTACGGTGCTTGCTGGAGCA
GACCCAAACTTGCGGGATGGGGGAGAGCGCAGCCCGCTTCACGTCGCAGC
TGCAGCAGGTCATCATGTCATCATGGAGAAACTGCTGCTCAGTCGCGTTA
TCCCTGATCCGAAGATCCGGGACGACGAGCAGACACCTCCATCTCGCTGC
GAAGGAAGGCCATGCGCTTTGTGTGTCGAATCTTTAGGCAGGAGGTGCAG
ACAAAGACTCCCTTGA
back to top