mRNA_P-littoralis_Contig86.132.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig86.132.1
Unique NamemRNA_P-littoralis_Contig86.132.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig86.132.1 vs. uniprot
Match: D8LTF4_ECTSI (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTF4_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 2.020e-18
Identity = 38/58 (65.52%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:   82 MASEATSDNFELNKDRSPATWMRVRDTTGTPFLWYTVLLQIAIACCSAVFLASNEENQ 255
            M  EA +D FELN+DRSPA WMRV DTTG  FLWYTV+L+IA ACCS V++ S++E+Q
Sbjct:    1 MPGEAANDEFELNEDRSPAEWMRVGDTTGDAFLWYTVMLEIASACCSIVYITSHDEDQ 58
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig86.132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTF4_ECTSI2.020e-1865.52WW domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig86contigP-littoralis_Contig86:481604..483016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size255
Hectar predicted targeting categoryother localisation
Exons2
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791734.9172359-CDS-P-littoralis_Contig86:481603..4817171680791734.9172359-CDS-P-littoralis_Contig86:481603..481717Pylaiella littoralis U1_48CDSP-littoralis_Contig86 481604..481717 +
1680791734.9298563-CDS-P-littoralis_Contig86:482875..4830161680791734.9298563-CDS-P-littoralis_Contig86:482875..483016Pylaiella littoralis U1_48CDSP-littoralis_Contig86 482876..483016 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig86.132.1prot_P-littoralis_Contig86.132.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig86 481604..483016 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig86.132.1

>prot_P-littoralis_Contig86.132.1 ID=prot_P-littoralis_Contig86.132.1|Name=mRNA_P-littoralis_Contig86.132.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=85bp
HAGIGEEHNDVEAARPSPLSRSAPVGKMASEATSDNFELNKDRSPATWMR
VRDTTGTPFLWYTVLLQIAIACCSAVFLASNEENQ
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mRNA from alignment at P-littoralis_Contig86:481604..483016+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig86.132.1 ID=mRNA_P-littoralis_Contig86.132.1|Name=mRNA_P-littoralis_Contig86.132.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1413bp|location=Sequence derived from alignment at P-littoralis_Contig86:481604..483016+ (Pylaiella littoralis U1_48)
CACGCGGGCATCGGCGAAGAACACAATGATGTCGAGGCGGCACGGCCGTC
TCCCCTGTCGAGGTCAGCGCCGGTTGGAAAGATGGCGAGCGAGGCAACTA
GTGACAACTTTGAGGTGAGCGGACAAGTAAAGCCTAGCGAGCGGCCTACA
GTACTAGGGATTCCTGCTTTGAATGTGACGCCAAAATGTTTACGTCCTAC
ATCAAGGATCGACGCGGGCAAAAGTGTTGGTTGATGACGAAGTACACCCC
GTGATGGAGTTGCTCCCGTTGGCAGCTGTGGCTCACCCAAGCTTTAGAAA
AAAATGACCCATCCACGCATCTACGCCGACGCGTGCCCGGCAAACAATCG
AAGACCATGGGGCGGCTTCCTGAACGCACAACGCCTGGCATGAGCTTTTA
GTCAGCGGTCTGATAGGCTGTTGCCTTGCCTGTTATTTGAGGGTCAGCTG
GGGATTACGATGTTTTCATGGTTATGGGCAAGTTCGATCCTCTGCTTCTG
CTGTAGGTAGACACATATCTTTCAACAACTGACACTTCGTGTGCGGCCAC
TATTTGCTGTACTCTGTCGAATGCTAGTGGGTATGCCCACTACGCAGCCA
GCCACTCTCACCCCAACGCTACTAGTGGCACGCCGCCACGCGGGTATTTT
AATGCAGAGGGGCATACCGGAACAGCACCAGAGACTTCTTCAGGCCACAA
CGTAACTAGCTGCTCTCATATTTGTGGAGTGCCCGAGCTACTGCTGTTGG
CACAGCAGCAGCAGCAGCAGCAGCAAGCGGTGTGATGTGCGTGTTCTCAC
GACAGGCACGCACATATCCCCCATCATGGCAAGTATCTCAAATAACGACT
ACCCTTTTGAGGCCGGACACTTCAATATCCGTACACTGCAGCGCAGTAAG
GGGAAGTGACGTCCGCAAGAAAAAGAATCTGCTGCAGAGGTACTGACTGT
AGCACATTACGGAATGTTATCGTCTACTTGTGCTTTATGTCGGCTTGATA
CGCGAGGCACACGATCATATTACACGTGCTGGGTGTAAAAGGAATGAAGA
TAATGGGCACATCCTAACAACCTCGAGTGACGTGTGTCTCGGTTTGGCTG
AAAAATAGGCTGCACATGTACTTGAGTGCTGCTGCTGTAGGATGGCTTTG
ACTTACATGCGAAGAGACTCCACGTCGCCTGACTATTGACCCCTCCGTCC
GTCATCAACCCATATCTGATTCGTTTTCCTACGCTTTCCGCTGGAAATTT
TTTCTTTCCCCCCTTTCGCCAGCTGAATAAAGACAGGAGCCCCGCGACGT
GGATGAGAGTCAGAGACACGACGGGGACGCCATTCCTATGGTACACCGTC
CTCCTGCAGATAGCAATCGCGTGCTGCAGCGCCGTGTTTCTTGCTTCCAA
CGAGGAGAACCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig86:481604..483016+

>mRNA_P-littoralis_Contig86.132.1 ID=mRNA_P-littoralis_Contig86.132.1|Name=mRNA_P-littoralis_Contig86.132.1|organism=Pylaiella littoralis U1_48|type=CDS|length=255bp|location=Sequence derived from alignment at P-littoralis_Contig86:481604..483016+ (Pylaiella littoralis U1_48)
CACGCGGGCATCGGCGAAGAACACAATGATGTCGAGGCGGCACGGCCGTC
TCCCCTGTCGAGGTCAGCGCCGGTTGGAAAGATGGCGAGCGAGGCAACTA
GTGACAACTTTGAGCTGAATAAAGACAGGAGCCCCGCGACGTGGATGAGA
GTCAGAGACACGACGGGGACGCCATTCCTATGGTACACCGTCCTCCTGCA
GATAGCAATCGCGTGCTGCAGCGCCGTGTTTCTTGCTTCCAACGAGGAGA
ACCAG
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