mRNA_P-littoralis_Contig86.129.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig86.129.1
Unique NamemRNA_P-littoralis_Contig86.129.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig86.129.1 vs. uniprot
Match: A0A6H5JLD2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD2_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.390e-10
Identity = 40/117 (34.19%), Postives = 65/117 (55.56%), Query Frame = 1 
Query:   40 PSLAPMDAVTCSNVSITMEDFDLFDGIY-VMDAMNETLFVRNDSLALLTYVPYEAYSAMNDTDSMSSSAMDSTXXXXXXXXXXXXXXXXXXXXXXTTATSECGRWVLAQVVDDSYTL 387
            PS + M+ + C  +S+ +++   FDGIY +M  MNETLF++NDS A +++VPYE   A+ +T S +++A++                          ATSECG W+LA+    +Y+L
Sbjct:  293 PSPSAMETMGCKTISVIVDEQQQFDGIYHMMAGMNETLFLKNDSSAFMSHVPYEG--AVTNTTSTTTTALN--------------------------ATSECGYWILAEATGGNYSL 381
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BLAST of mRNA_P-littoralis_Contig86.129.1 vs. uniprot
Match: D8LTF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTF3_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 5.200e-10
Identity = 39/114 (34.21%), Postives = 63/114 (55.26%), Query Frame = 1 
Query:   40 PSLAPMDAVTCSNVSITMEDFDLFDGIY-VMDAMNETLFVRNDSLALLTYVPYEAYSAMNDTDSMSSSAMDSTXXXXXXXXXXXXXXXXXXXXXXTTATSECGRWVLAQVVDDS 378
            PS + M+ + C  +S+ +++   FDGIY +M  MNETLF++NDS A++++VPYE   A  +T S +++A++                          ATSECG W+LA+   +S
Sbjct:  574 PSPSAMETMDCKTISVIVDELQQFDGIYHMMAGMNETLFLKNDSSAIMSHVPYEG--AATNTTSTTTTALN--------------------------ATSECGYWILAEATGNS 659
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig86.129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JLD2_9PHAE1.390e-1034.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTF3_ECTSI5.200e-1034.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig86contigP-littoralis_Contig86:469549..471442 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size604
Hectar predicted targeting categoryother localisation
Exons4
Cds size603
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791734.6507897-CDS-P-littoralis_Contig86:469548..4696441680791734.6507897-CDS-P-littoralis_Contig86:469548..469644Pylaiella littoralis U1_48CDSP-littoralis_Contig86 469549..469644 -
1680791734.6635966-CDS-P-littoralis_Contig86:470063..4702301680791734.6635966-CDS-P-littoralis_Contig86:470063..470230Pylaiella littoralis U1_48CDSP-littoralis_Contig86 470064..470230 -
1680791734.6792984-CDS-P-littoralis_Contig86:470468..4706791680791734.6792984-CDS-P-littoralis_Contig86:470468..470679Pylaiella littoralis U1_48CDSP-littoralis_Contig86 470469..470679 -
1680791734.6906633-CDS-P-littoralis_Contig86:471313..4714421680791734.6906633-CDS-P-littoralis_Contig86:471313..471442Pylaiella littoralis U1_48CDSP-littoralis_Contig86 471314..471442 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig86.129.1prot_P-littoralis_Contig86.129.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig86 469549..471442 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig86.129.1

>prot_P-littoralis_Contig86.129.1 ID=prot_P-littoralis_Contig86.129.1|Name=mRNA_P-littoralis_Contig86.129.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=201bp
SSQRGGTFTVSPAPSLAPMDAVTCSNVSITMEDFDLFDGIYVMDAMNETL
FVRNDSLALLTYVPYEAYSAMNDTDSMSSSAMDSTTNSTVNSTVAPTTAD
STTGDSTTTATSECGRWVLAQVVDDSYTLEQFPQVSVQDCAAHPEDIEAT
TSKWMMQNASETELEGAMTGIVECADRPISVAPATPNPSPDVGEDPTISP
S
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mRNA from alignment at P-littoralis_Contig86:469549..471442-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig86.129.1 ID=mRNA_P-littoralis_Contig86.129.1|Name=mRNA_P-littoralis_Contig86.129.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1894bp|location=Sequence derived from alignment at P-littoralis_Contig86:469549..471442- (Pylaiella littoralis U1_48)
TCTTCTCAGAGGGGCGGCACCTTCACCGTCTCTCCAGCACCATCGCTCGC
CCCCATGGACGCGGTCACCTGCAGCAATGTCTCCATCACCATGGAAGATT
TCGATCTCTTCGACGGCATCTACGTCATGGTAAGTGTTGGTTGTCAGCCC
CCCCCCCCCAGCCGGTGACGGTAACCGTCCCTAGTGCGTGGTGTCGTTCC
TTATGGTTGTTGACATACATATGATATACATATGTTATCATAGAACATGT
GGTGGTGAAATATGATGGCTGTGTGTATGTGCCCATCAAAGGGCGTTGGC
GGCGCTAATCATGTATGGTACGAAGTATCTGTCAACCATGATGATGATGG
CAGGCGAAGAGAGAGCGAGAGAAGATGGTATACGCGACTTGTACGGTAAT
ATAGTCGTACCTGATGGTGAGAGAAGAGCTGGAGGGAGAGTTCCAAGTGA
CGAATAATATAATGGTAGGCGAAGAGTGAGAGAGAGAGAGAGAAGATGAA
ACACACGACTTGTACAGTAGAATAGTCGCATATGCTGGTGAGAGAGCGCG
GGAGAGATAATTCCAAGTGACGGATATGAAAAAGGCGACCCAAAATGGCG
GCATTTTTGCTACCTAGCGATAAGAGGGTTAGAGCGGGGCGTGCGTCCGC
ATGTGCCCCGATCGGATACAACACGATGGTGGTCGTGTTGCACGTGTCGG
ATGGGGATGGAAATAACCGCCCCTCCTTCCCCCCCCCGATGGCTTGCTCT
TGTTACTGGTCAGGATGCGATGAACGAGACTCTCTTCGTGAGGAACGACA
GCCTTGCCCTGTTGACCTACGTACCGTACGAGGCATACAGCGCGATGAAC
GACACGGACTCGATGAGCAGCAGCGCCATGGACTCCACCACGAACTCCAC
CGTGAACTCCACCGTGGCCCCAACCACCGCGGACTCCACCACTGGCGACT
CCACCACCACCGCCACCTCCGAGTGTGAGTTGTAATGCACACCCTTCTCA
CATTCATCGAATAAAGAGAATTGTCCAAGCTCGAGCATGCTATTCACAAA
TTTACATACATGTATGCCTGTCTAGCGTGAATCTACACTTTGAGCGCTGC
CACTCTCACGACTGTTGATATCAGAGTTGTACCGCCTGTCTCCCCGGAAA
ATGAAAATGTCTGTTCTTGACCCCCCCCCCTGCAAACACTTTTCCTCAAC
AAAACCAACCAGGTGGCCGCTGGGTGCTGGCCCAAGTGGTGGACGACTCG
TACACGTTGGAGCAGTTCCCCCAAGTCAGCGTGCAAGACTGTGCTGCGCA
TCCCGAAGACATCGAAGCTACGACGTCAAAGTGGATGATGCAGAACGCCT
CTGAAACTGAATTGGAAGGCGCCATGACGGTGAGATGTAGCTACATATAT
TGCCATTTGTTAGTCGCTAAATTACCAGCACTCTTGTGTGTGTGCCAAAC
ACTATTATTTTCTATTATATATATATTTTTTATTCTGATTACCACGAACG
GTTCTGTATTGATGTTTTCAATATTTCAACATCTCGTTTTTTACAAAACT
ACCTTTGATTGTGATGGTTTCGTTGTTATTGTTATAACGATCATGTTGTT
GTTTTTAAATGCAACGACACCATCACTTGACAAAAAAAAAGGATACATGT
GCATCAATTTCAATCAACACTTGTTGAACACTCCGTACTTTGCGGTCGAA
AATACCACAAGAATACTTCTTCACTGACGCAAGACGCGCCCTTCCCCTCC
TTGTCTCTTCGCCAACCCCACCTAACCACCCACCCACCCACCAAACAGGG
CATCGTGGAGTGTGCAGACAGGCCAATCAGCGTGGCTCCCGCAACCCCTA
ACCCCTCACCTGATGTTGGCGAAGACCCAACAATCAGCCCCTCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig86:469549..471442-

>mRNA_P-littoralis_Contig86.129.1 ID=mRNA_P-littoralis_Contig86.129.1|Name=mRNA_P-littoralis_Contig86.129.1|organism=Pylaiella littoralis U1_48|type=CDS|length=603bp|location=Sequence derived from alignment at P-littoralis_Contig86:469549..471442- (Pylaiella littoralis U1_48)
TCTTCTCAGAGGGGCGGCACCTTCACCGTCTCTCCAGCACCATCGCTCGC
CCCCATGGACGCGGTCACCTGCAGCAATGTCTCCATCACCATGGAAGATT
TCGATCTCTTCGACGGCATCTACGTCATGGATGCGATGAACGAGACTCTC
TTCGTGAGGAACGACAGCCTTGCCCTGTTGACCTACGTACCGTACGAGGC
ATACAGCGCGATGAACGACACGGACTCGATGAGCAGCAGCGCCATGGACT
CCACCACGAACTCCACCGTGAACTCCACCGTGGCCCCAACCACCGCGGAC
TCCACCACTGGCGACTCCACCACCACCGCCACCTCCGAGTGTGGCCGCTG
GGTGCTGGCCCAAGTGGTGGACGACTCGTACACGTTGGAGCAGTTCCCCC
AAGTCAGCGTGCAAGACTGTGCTGCGCATCCCGAAGACATCGAAGCTACG
ACGTCAAAGTGGATGATGCAGAACGCCTCTGAAACTGAATTGGAAGGCGC
CATGACGGGCATCGTGGAGTGTGCAGACAGGCCAATCAGCGTGGCTCCCG
CAACCCCTAACCCCTCACCTGATGTTGGCGAAGACCCAACAATCAGCCCC
TCC
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