mRNA_P-littoralis_Contig854.4.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig854.4.2
Unique NamemRNA_P-littoralis_Contig854.4.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig854.4.2 vs. uniprot
Match: D8LSM8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSM8_ECTSI)

HSP 1 Score: 300 bits (767), Expect = 8.490e-93
Identity = 216/307 (70.36%), Postives = 231/307 (75.24%), Query Frame = 1 
Query:  244 MLASATEVEVELHVPENVSTFFGVTWAQDPRKDKIFIKAFPRGSDGRRGILESTGLVEVDDCLTAINGVPLDKSSGLHEVMACIRAAKSPLSLRFARYPPXXXXXXXXXXXXXXXXSGSSAXXXXXXXXXXXXGGIXXXXXXXXXXXXXXXXXXXXXXXXGSGDSVRSGQSTGNSSSRGYGSLATTAARARARTG---DAEDPELDAVLNSALVLGLGERVAEIQKRNGRLLQEVDRIGRAAASKRQGVEKVASAAASLTAAG-DSLPKQALRLLSAARHDAVALCEAMARLDELLAVRERAQMARR 1152
            MLASATEVEVELHVP++VSTFFGVTWAQDPRK+KIFIKAFPRG +GRRGILESTGLVE+DDCLTAINGV +DKSS LHEVMA IRAA+SPLSLRFARYPP                  S +    XXXXXXXX   XXXXXXXXXXXXXXXXXXX     G+G S                                 DA DP+LDAVLNSALVLGLGERVA+IQKRN RLLQEVDRIGRAAA KRQGVE+VASAAASLTAAG D LP++ALRLLSAAR DAVALCEAMARLDELLA RERAQ+ARR
Sbjct:    1 MLASATEVEVELHVPDDVSTFFGVTWAQDPRKNKIFIKAFPRGPNGRRGILESTGLVELDDCLTAINGVSVDKSSALHEVMASIRAAESPLSLRFARYPPPPLQRCSPSSSLSSPSLFSPSPSAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGRHIGAGKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDAADPDLDAVLNSALVLGLGERVADIQKRNSRLLQEVDRIGRAAADKRQGVERVASAAASLTAAGSDLLPRRALRLLSAARQDAVALCEAMARLDELLAARERAQLARR 307
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig854.4.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSM8_ECTSI8.490e-9370.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig854contigP-littoralis_Contig854:27327..32780 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1959
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionPDZ domain
Ec32 orthologEc-09_002240.1
Cds size1002
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791723.8411756-UTR-P-littoralis_Contig854:27326..280401680791723.8411756-UTR-P-littoralis_Contig854:27326..28040Pylaiella littoralis U1_48UTRP-littoralis_Contig854 27327..28040 -
1680791723.9050987-UTR-P-littoralis_Contig854:32537..327801680791723.9050987-UTR-P-littoralis_Contig854:32537..32780Pylaiella littoralis U1_48UTRP-littoralis_Contig854 32538..32780 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791723.8604417-CDS-P-littoralis_Contig854:28040..283101680791723.8604417-CDS-P-littoralis_Contig854:28040..28310Pylaiella littoralis U1_48CDSP-littoralis_Contig854 28041..28310 -
1680791723.8787582-CDS-P-littoralis_Contig854:29051..296811680791723.8787582-CDS-P-littoralis_Contig854:29051..29681Pylaiella littoralis U1_48CDSP-littoralis_Contig854 29052..29681 -
1680791723.8930845-CDS-P-littoralis_Contig854:32435..325371680791723.8930845-CDS-P-littoralis_Contig854:32435..32537Pylaiella littoralis U1_48CDSP-littoralis_Contig854 32436..32537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig854.4.2prot_P-littoralis_Contig854.4.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig854 28041..32537 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig854.4.2

>prot_P-littoralis_Contig854.4.2 ID=prot_P-littoralis_Contig854.4.2|Name=mRNA_P-littoralis_Contig854.4.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=334bp
MLASATEVEVELHVPENVSTFFGVTWAQDPRKDKIFIKAFPRGSDGRRGI
LESTGLVEVDDCLTAINGVPLDKSSGLHEVMACIRAAKSPLSLRFARYPP
PPLLHSSSSSSSSSFFSGSSASATGSASVAAAVGGIGTATPSPPAADSLS
SSSGGGRGGNGSGDSVRSGQSTGNSSSRGYGSLATTAARARARTGDAEDP
ELDAVLNSALVLGLGERVAEIQKRNGRLLQEVDRIGRAAASKRQGVEKVA
SAAASLTAAGDSLPKQALRLLSAARHDAVALCEAMARLDELLAVRERAQM
ARRRNLEQEDRRGGGGMASGGGGGDGLPRGVRR*
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mRNA from alignment at P-littoralis_Contig854:27327..32780-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig854.4.2 ID=mRNA_P-littoralis_Contig854.4.2|Name=mRNA_P-littoralis_Contig854.4.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=5454bp|location=Sequence derived from alignment at P-littoralis_Contig854:27327..32780- (Pylaiella littoralis U1_48)
CCATCAGCAGTGCTGGGGTGCTGGTAAATGCTGCAAACCTCCACCCTGTT
GTTGTTATCAAGAAGATAGTCGGCAGCATTCACAGAAGTGACAGAAAGAG
AGCTAACGTGCTCTACTGTGCTCAGAGGAGTACAAATTTGTGAGCAAGGG
AGCCACCACGGCAGCCTTCTGCTGAACAGAGCTCCCGCCTGTTGCACGCT
ATCTTTGTTCTCAGTGCCCACAACCAACAGCAGCAGGATCACCATGCTTG
CCTCTGCCACCGAGGTAGAAGTGGAGCTGCACGTTCCGGAAAACGTGTCA
ACCTTCTTCGGGGTCACATGGGCGCAAGACCCACGAAAAGACAAGGTGGG
GACTGGGTGCGAGTGCAGCAGCATGGATGAACAATTTACAATTTACTAGT
AGGTATGATACCAAGGTAAACCTTTACAGCAGTAGGTGGATACCGGTAGT
TGTTGAGCCTGGATAGTTGGATAGTTGGGCAAACGACAATAACGCTAATT
GTATCAAACCTGGTGTCAAGTTGCCTCCAAAGCGGCTGTACACAACATGT
TAGCATGATACGAAGTAACATTGAAGTATTTATATCTTCTTGAAGACACC
AATGCGTTTCGCCTCTCTCCAGACGAGGATATCGTAGTACATCTACTGCT
GTACCTGTATTTCTGGCGGGATCACGAACTCAAAAAACGGTACTGCTGTA
CAGTATACCTCCATGGTGGTCCCGCTCCACCATGAGCGGTAGACGTGTTG
CAAGACAGTTTGACGTTTGAGCCTCTCTCACGACGCTGATTGGTCAACTA
GGCCTTGTTCCACTTCGTGGCACAAGCACCTGACGATGTACCGCATCGCA
GCTGTTCGGTTTGACTCTCACCCATTTTGGCATGGGCTGCATTCTGGCGG
GATCACACCACCCCTAGAGCGACATTTCCCAAGCCGTTCGCCCCCAAAAG
GAATTTACTCCACCACCATCGCAGCTCATCAGGCTGACTCTCGTCATCTT
CCGGAATGGGGTGTATCTCTGGCGGGATGGCTTACTCAAAAAATAAAGGT
GTACATCCAGGGTTCAACTCCACCAATGTGGTACACATGTCACAGTTTGA
CTTTTGAGCCTCCCTCGCGACGCTGATTGGTCGACTACCTTGTACCGCTT
TGTAACACAAGCACCTGGCGATGTACCGCATCGCAGCTGTTAGGGTTAAG
TCTCACCCATTTTTGGCATGGGGTGCATTCTGGCGGGATCACAGTACCCC
TAGAGCGACATTTCCCATGCCGTTCGCACCCAAAAGGAAATTCACTCCAC
AACAATCACAGCCACGGTATGTATGCCATGGACATACAAATACTGCGGCA
CAGGTTAGGTCCTAGAGTAAGCCTTGGCGCCATTCTTTTTTGAGACAAAG
TTAGGTGAATAAGCAACGCTAGACAGACAATATATGGGACTGTATGGGCT
ATGTGAGAGAGGAGAGGGGCGCACGGGCCGTTATGGTGAGCGAGTGTGCT
GCTTGTGCCACGCATGGGCAGCTCGGCTGCACTGTCAGTCTTAGGCCCTG
ATTTTGAGGAGTAGGCAGCAGCGAGAGGGCCGCGCTATGTATGTGGAAGT
CGATAACCGCCGCACAGACCGTCCAAGCCGTGTCATGTGCCTACGACCTC
CGGAAGGGTCTCACACTGAGGCCTGTTTTTGGATGTCCGTGATATGATGT
GACGTGGCTACGTCACTTGTGGAGTGAAAAAATATTTCGCGTGCGAAACG
CCTGGAAAATGTCCCGCTAGGTCTTCTCTGACCCCGCCAGAAATCGGTAC
AACCCACGCCAAAATGATGGTGAGAATCAACGCGACAAGCCGCCATACGG
TAATCCATCAGGCAATGGAGTCACAGAGCGATACCAGGCGTAGTCAAATG
ACCAGTGACGCGAGAGGCTCTAGTGTCGAAGTGTATTCTGGTGTGTACCA
CTGTGTGGCGCCGAACCCTAGCGATATACCGTTTCCAGGCGTTCGGCCGT
TTTTCATCGCGTTTCTGCTCCAGCGCTCCTACGCCACCACCCTCCGTTTG
TCGGTTTGTCGTTCAATACTTGCAGAGGTACGTAGGAGTACTGAATGTCT
TGCCGCGTAAAAACATACGGCTGTCTCTACACCCTGAGATACCGGTATGA
TCTTCCCTGAGGTTGGACTTCGCTGGGATTGCTGCTGTCGATTTGTGACA
CGTCTAAAACGAACGGGTGTTATGATACGTGTTTAGCCTGTGTAATGTTA
TTCTTTCTGTCTTGGTTCTTGAGCTTCCCGCTCACACATGCTCGTTCTAC
GTATACGCACGACATGGTATGGCATGAATTGTTTCGACAAAGGTTCATCA
CCACGATTGTACTCTTCTTACGTCTGTCGCCTGCTATAGGCAACGTTTCT
ATGCCGTATCTTGCGAATGAAAATAAAGTTCCTCCACAAGCTATCGAGTT
TTAGATTGTGAATCTATTGACGAGCCAATGTCATACCAGTAGAGTTTGTT
CAATATCTCGTACGACTGTTGCCCTCGGTGTGCATAGCGCAACAGCACAG
CAGCAGTGCTACGAATGCCTTCCAACAGAAAATGCATTGACAACATGCAA
TGGGTCTAAACGCGCCAGACAATTTGCAGCAGTGGACATTCGTACGCATC
TTGCGTTTGTAGAATCGCACTCGAGCCTTACCACTACATGGAATGACCAC
CAAAGCTTTTCAATTTGTTTTTTAACCCAAATGTTTCACACATCGTCACC
AAGAGTGTCCCGGTTTTTTGTGGCCGAACGGCTGCAGCTGTATTTGCAGC
ACGCAAATACTGCACCAACTAATTGTACCAAGCCACCACGCCACACGCAT
GCAGTCGCTTGCAGCACCACGTGCAATCGTATTAGTTGCTGCCGAGGCCG
CACAACAGAAAGCGCATGGGCTGCACCTCCACTTCTCACCTACCCCCCCC
CTTCCCCATCTTTCACAACTCCCTCTTTGCCTGTGTGAATCTCCCCGAAC
CCTACCGCACCGCCGGCCACCCTGGCCGCCTTCTTCCCCATTTTCCCTTC
TTAGTTTCTTATCATTTAACTTCCCACTACCCCATGAATCCAAAATCAGA
TTTTTATAAAGGCTTTTCCGCGAGGATCTGACGGGAGGAGGGGCATTCTC
GAGTCCACCGGTCTCGTCGAAGTGGACGACTGCTTGACCGCGATCAACGG
CGTCCCACTCGACAAGTCCAGCGGCTTGCACGAGGTCATGGCCTGCATCC
GCGCCGCAAAGTCGCCGCTGTCCCTCCGGTTCGCGCGGTACCCCCCGCCG
CCGCTGCTGCATTCCTCCTCCTCGTCCTCCTCCTCGTCCTTCTTCTCCGG
TTCTTCCGCTTCGGCAACCGGATCGGCTTCCGTGGCGGCGGCGGTAGGGG
GGATCGGGACAGCAACGCCTTCTCCACCGGCCGCGGACTCTCTGAGCAGC
AGTAGCGGTGGCGGCCGAGGCGGCAACGGGAGTGGCGATTCCGTTAGATC
CGGACAGAGCACTGGCAACAGTAGCAGCAGAGGATATGGTAGCCTCGCCA
CCACCGCCGCGAGGGCGAGAGCGAGAACAGGAGATGCCGAAGATCCCGAG
CTCGACGCCGTTCTGAACAGCGCGCTTGTACTGGGGCTCGGGGAGCGGGT
CGCCGAAATCCAGAAGCGAAACGGGCGGCTGCTTCAGGAGGTTGACCGCA
TCGGGCGAGCAGCCGCGAGCAAGCGACAGGTGTGTTTTCATAAAATACTA
AATGGCCGCCCTCAGGCATGAGTGCACCATTTCTGTATGATTCATAATTC
CGTTATGAAGGTTGACCGTTTGTGTCTTCGATGCATGTGGTGTGTATGCA
CCCGCAGACAGCAGTGCCTTGTTCGTGGGGTCTCGGTTGCCTATTTTGCG
CTTTGCCTTGTATCAAAGCATGATCAGTGCTGATTTTCGAGGTCTCAGTG
AACAGAATCGGAGTTGTTTGACGCCAAGGCGGCGACAACGAGGATTCGAG
CATCCACGAAAGCGACATGAGGAACATACAAGGGATCACCGCAGATCTCC
TTCGAAACCAAAACTCGAACACTGATTTGCCTGTTTGGCATTGTCTCGCC
TTGAGGTGTCCGAAGATACAGATATCCTTCTCCGCACTGTGCGAAGGGCA
AGGGTTCCCGTTTCATCCCTGATTTTACTCTTTTTTTTTTCGCTCTGCTC
CTCGCATTCCCGATGTTGCCCTTCAATCTGTTGGGTGCATGCAAACCCAT
GTAGCTTTTTTTTAAGACGATGTCGTCCGCGCGGTGACCATGCTTGCATG
CCTGCATGTGTGATGCCGCTGTTTCCTTACATTGTGCATTTTCCGTGTGG
CGATGGAGGTGTTATCTTACGCTTTCGTCCTCGTAATTTGTTCGCTTATT
TGTTTGTTTGTTTGTTTGTATGATATGTTTGTTTGTTTTCGGTTTCAAAC
CGCACGACTGCCGACGCCAGGGGGTGGAAAAGGTCGCGTCTGCGGCGGCT
TCGTTGACAGCGGCGGGAGATAGCCTCCCGAAACAAGCGCTGCGGCTTCT
GTCGGCCGCCCGGCATGACGCCGTGGCTCTCTGCGAGGCGATGGCCCGGC
TGGACGAACTGCTGGCGGTGAGGGAGAGGGCGCAGATGGCTAGGCGGCGA
AATCTTGAGCAGGAGGACAGAAGAGGGGGAGGGGGGATGGCATCGGGCGG
GGGAGGTGGTGATGGGTTGCCACGAGGAGTAAGACGATAGCAGTACAGCT
GCCACCGCTCACTTTTTGCTGCGGTGGTGATGTCATTGACGGAGGAAAGT
GATGATCAGCAGCGTGCTGGCGTTCAGCCTGGGCAGGTGGTTTGAAATGC
GAGCTGCCTTTCAGTTATTTTGGCGGAGGGAAGCGCTTCGTTTTGCGCCC
CTCTTGGCGGTAGTTAAAAGTGTGGAGAATGGATGGCCCCCTCTCTCTGT
CTCTTGATTTGTCTCTCTCCTGTGCTCTCTGTGCACCTCTGTTAAGCATG
ATAATGAATCTCTTTTTTGTGTGGTATACGGGTGTTACAGTTTTTCCACG
AGACATTGAGTGGCTTGGTCGTGGTTTGGGTGTTTGTAAAATATGTACTA
TCAATTGCGTAGCACGGCTGTTACGGCTTTTAGACCCTTGTCTAGAAGGA
CGATTGCACTTTGAATGTCTATGTAAAACATTTATACTTCGAAGTACAAG
TACAGAATAAAATTGCAAGGACAGGATGTGCGTTTTCTTCGGAGAATCAA
CGAATGCAAAAGGCACAATGGCAGACATCAGGGACACCGGGAAACAGAAC
TTGTGTGCGTCTGTGGCTACAGTGTGTGGTTATGCGCGTGCGACTCTCAT
TTAGATTGATTTCTACAGAGGGGTGCTTATAACAGCAGGCAGTCGCCGGG
AGCTTGATGGAGGCTTTTTTTCTCTTCATTCTGAGTTTCAATGCGCAAAC
AATA
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Coding sequence (CDS) from alignment at P-littoralis_Contig854:27327..32780-

>mRNA_P-littoralis_Contig854.4.2 ID=mRNA_P-littoralis_Contig854.4.2|Name=mRNA_P-littoralis_Contig854.4.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1002bp|location=Sequence derived from alignment at P-littoralis_Contig854:27327..32780- (Pylaiella littoralis U1_48)
ATGCTTGCCTCTGCCACCGAGGTAGAAGTGGAGCTGCACGTTCCGGAAAA
CGTGTCAACCTTCTTCGGGGTCACATGGGCGCAAGACCCACGAAAAGACA
AGATTTTTATAAAGGCTTTTCCGCGAGGATCTGACGGGAGGAGGGGCATT
CTCGAGTCCACCGGTCTCGTCGAAGTGGACGACTGCTTGACCGCGATCAA
CGGCGTCCCACTCGACAAGTCCAGCGGCTTGCACGAGGTCATGGCCTGCA
TCCGCGCCGCAAAGTCGCCGCTGTCCCTCCGGTTCGCGCGGTACCCCCCG
CCGCCGCTGCTGCATTCCTCCTCCTCGTCCTCCTCCTCGTCCTTCTTCTC
CGGTTCTTCCGCTTCGGCAACCGGATCGGCTTCCGTGGCGGCGGCGGTAG
GGGGGATCGGGACAGCAACGCCTTCTCCACCGGCCGCGGACTCTCTGAGC
AGCAGTAGCGGTGGCGGCCGAGGCGGCAACGGGAGTGGCGATTCCGTTAG
ATCCGGACAGAGCACTGGCAACAGTAGCAGCAGAGGATATGGTAGCCTCG
CCACCACCGCCGCGAGGGCGAGAGCGAGAACAGGAGATGCCGAAGATCCC
GAGCTCGACGCCGTTCTGAACAGCGCGCTTGTACTGGGGCTCGGGGAGCG
GGTCGCCGAAATCCAGAAGCGAAACGGGCGGCTGCTTCAGGAGGTTGACC
GCATCGGGCGAGCAGCCGCGAGCAAGCGACAGGGGGTGGAAAAGGTCGCG
TCTGCGGCGGCTTCGTTGACAGCGGCGGGAGATAGCCTCCCGAAACAAGC
GCTGCGGCTTCTGTCGGCCGCCCGGCATGACGCCGTGGCTCTCTGCGAGG
CGATGGCCCGGCTGGACGAACTGCTGGCGGTGAGGGAGAGGGCGCAGATG
GCTAGGCGGCGAAATCTTGAGCAGGAGGACAGAAGAGGGGGAGGGGGGAT
GGCATCGGGCGGGGGAGGTGGTGATGGGTTGCCACGAGGAGTAAGACGAT
AG
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