mRNA_P-littoralis_Contig852.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig852.11.1
Unique NamemRNA_P-littoralis_Contig852.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig852.11.1 vs. uniprot
Match: Q8QNC6_ESV1K (EsV-1-156 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNC6_ESV1K)

HSP 1 Score: 166 bits (419), Expect = 2.480e-46
Identity = 95/211 (45.02%), Postives = 130/211 (61.61%), Query Frame = 3 
Query:  132 ETPNRLYETLTSMLKASCVKRLEVTKFISEGSFGHVFRALRNDGTRAVIKVRLVPRRK*RAKPLLKRITTSKGLAPKIL-----EGKKTIEKSAHKGLNDLEYDDDDIEYH-----PRGHLVHIIVMEEFTGVIGDWLHPLKSKEQLGQLTLNFFYLLDSFRRHKLTHADLHLWNLGYVYTDASKKHLKLMPIDFGRSRKGKLTRSWRLAA 734
            + PNRL ETLT ML  SC++   VTKF+S G++GHVFRA+  +GT A +KV+    ++ R +   +R    +GLAPKI+     + K  +   AH+ LN     D  + +      P G+LVH+I+MEE  GV+G WL   KS +QL +       L+ +FR H LTH DLHL N+GYVYTDASK++++LMPIDFGRS  GK   S  + A
Sbjct:   47 KNPNRLCETLTKMLACSCMRGWRVTKFLSAGAYGHVFRAVHTNGTSAALKVQTGDAKRLRGELSAQRAFHKRGLAPKIIRYCSFKPKTRLGMVAHERLN-RAVQDKSVPFQTEDESPAGNLVHVIIMEEIAGVLGQWLRREKSNQQLHKTAFEITKLMVAFRNHGLTHGDLHLNNIGYVYTDASKRYMRLMPIDFGRSYVGKAFTSLEVGA 256
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig852.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QNC6_ESV1K2.480e-4645.02EsV-1-156 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig852contigP-littoralis_Contig852:59791..60536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size748
Hectar predicted targeting categoryother localisation
Exons1
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791722.6848176-CDS-P-littoralis_Contig852:59790..600571680791722.6848176-CDS-P-littoralis_Contig852:59790..60057Pylaiella littoralis U1_48CDSP-littoralis_Contig852 59791..60057 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791722.7052956-UTR-P-littoralis_Contig852:60057..605361680791722.7052956-UTR-P-littoralis_Contig852:60057..60536Pylaiella littoralis U1_48UTRP-littoralis_Contig852 60058..60536 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig852.11.1prot_P-littoralis_Contig852.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig852 59791..60057 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig852.11.1

>prot_P-littoralis_Contig852.11.1 ID=prot_P-littoralis_Contig852.11.1|Name=mRNA_P-littoralis_Contig852.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=89bp
MEEFTGVIGDWLHPLKSKEQLGQLTLNFFYLLDSFRRHKLTHADLHLWNL
GYVYTDASKKHLKLMPIDFGRSRKGKLTRSWRLAASCAS
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mRNA from alignment at P-littoralis_Contig852:59791..60536-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig852.11.1 ID=mRNA_P-littoralis_Contig852.11.1|Name=mRNA_P-littoralis_Contig852.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=746bp|location=Sequence derived from alignment at P-littoralis_Contig852:59791..60536- (Pylaiella littoralis U1_48)
AGCAGGCTCAAGAAGGCAGCGACTCGCGCACGGCCAAGTGTGTGGTGCGA
GCTATCGCAACTCCGGGCTCGTCGTCTGATTCTCAAGGTGGGCCTTGGTC
GTCATCTCGTGCCTCGAGACCTACCCACCGCGAAACCCCCAACAGGCTGT
ATGAAACGCTGACGAGCATGCTCAAAGCTTCATGTGTCAAGAGGCTGGAG
GTTACGAAATTCATCTCCGAGGGATCGTTCGGCCACGTCTTCCGCGCGCT
GAGAAATGATGGCACCAGAGCAGTAATCAAAGTCAGACTGGTTCCGCGAA
GGAAATAAAGGGCGAAGCCGTTGCTCAAAAGAATTACCACAAGTAAGGGT
CTTGCCCCCAAGATACTAGAGGGTAAAAAAACGATTGAGAAATCGGCACA
CAAGGGACTGAACGACCTCGAATACGATGATGACGACATAGAGTATCACC
CCCGGGGCCATTTGGTCCACATCATCGTGATGGAGGAGTTTACTGGCGTT
ATCGGTGACTGGCTACATCCCCTAAAGTCAAAAGAACAGCTCGGACAGCT
TACGCTCAATTTTTTTTATCTATTGGATTCTTTCAGAAGGCACAAACTGA
CACATGCCGATCTACACTTGTGGAACTTGGGGTACGTGTACACCGACGCG
TCAAAGAAACATCTGAAGCTGATGCCGATTGATTTTGGGAGGTCTAGAAA
AGGAAAGCTTACACGGAGTTGGAGGTTGGCTGCCTCTTGCGCATCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig852:59791..60536-

>mRNA_P-littoralis_Contig852.11.1 ID=mRNA_P-littoralis_Contig852.11.1|Name=mRNA_P-littoralis_Contig852.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=267bp|location=Sequence derived from alignment at P-littoralis_Contig852:59791..60536- (Pylaiella littoralis U1_48)
ATGGAGGAGTTTACTGGCGTTATCGGTGACTGGCTACATCCCCTAAAGTC
AAAAGAACAGCTCGGACAGCTTACGCTCAATTTTTTTTATCTATTGGATT
CTTTCAGAAGGCACAAACTGACACATGCCGATCTACACTTGTGGAACTTG
GGGTACGTGTACACCGACGCGTCAAAGAAACATCTGAAGCTGATGCCGAT
TGATTTTGGGAGGTCTAGAAAAGGAAAGCTTACACGGAGTTGGAGGTTGG
CTGCCTCTTGCGCATCC
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