mRNA_P-littoralis_Contig85.52.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig85.52.1 vs. uniprot
Match: M5FBY9_9HYPH (Pyridoxal-dependent decarboxylase n=1 Tax=Mesorhizobium metallidurans STM 2683 TaxID=1297569 RepID=M5FBY9_9HYPH) HSP 1 Score: 75.9 bits (185), Expect = 2.290e-12 Identity = 39/100 (39.00%), Postives = 58/100 (58.00%), Query Frame = 3
Query: 414 LDAAGYDREHRYIHVDSAHSGFVLPFLEDVDPGICVDFRRQGLSSCSASLQKALGVSAPASVFLIKKGIAN--ATFYEYIKMSDITLSCSRNGHLAFEGW 707
L+ AG R RY+HVD A +G V+PFLE+V+ GI F+ + + S SAS K +G P + + ++ N A+ Y++ +D TL SRNGH + W
Sbjct: 162 LEQAGVSRNRRYLHVDGALNGMVIPFLENVESGIIPSFKHE-IDSISASGHKMIGTPMPCGILVARRNHVNRIASSISYLRSNDTTLMGSRNGHASIAIW 260
BLAST of mRNA_P-littoralis_Contig85.52.1 vs. uniprot
Match: A0A4Q3G922_9HYPH (Histidine decarboxylase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A4Q3G922_9HYPH) HSP 1 Score: 69.3 bits (168), Expect = 4.790e-10 Identity = 37/105 (35.24%), Postives = 58/105 (55.24%), Query Frame = 3
Query: 408 QKLDAAGYDREHRYIHVDSAHSGFVLPFLEDVDPGICVDFRRQGLSSCSASLQKALGVSAPASVFLIKKGIAN--ATFYEYIKMSDITLSCSRNGHLAFEGWAML 716
+ LD G+ ++ R++H+D A +G VLPFL+ V + +FR +SS S S K +G + P V + ++ A+ Y++ +D TL SRNGH WA L
Sbjct: 201 EALDDCGFPQQRRFVHIDGALNGMVLPFLDGVPERLQPNFRH-AISSISTSGHKMIGTTMPCGVLVTRRHYVERVASAVAYLRSNDTTLMGSRNGHAVLALWARL 304
BLAST of mRNA_P-littoralis_Contig85.52.1 vs. uniprot
Match: UPI001F1F444D (histidine decarboxylase n=1 Tax=Acidocella facilis TaxID=525 RepID=UPI001F1F444D) HSP 1 Score: 68.6 bits (166), Expect = 8.760e-10 Identity = 37/100 (37.00%), Postives = 52/100 (52.00%), Query Frame = 3
Query: 414 LDAAGYDREHRYIHVDSAHSGFVLPFLEDVDPGICVDFRRQGLSSCSASLQKALGVSAPASVFLIKKGIAN--ATFYEYIKMSDITLSCSRNGHLAFEGW 707
LD GYD RYIHVD A G ++PF+ P I +F+ + S S S K +GV P V ++++ + + Y+K +D TL SRNGH W
Sbjct: 195 LDELGYDATRRYIHVDGALDGMIIPFVPSASPEISPNFKLP-IDSISTSGHKMVGVPMPCGVLVVRRCYIDKITSAISYLKSNDTTLMGSRNGHATLAIW 293
BLAST of mRNA_P-littoralis_Contig85.52.1 vs. uniprot
Match: A0A6H9TML6_9BURK (Histidine decarboxylase n=2 Tax=Burkholderia latens TaxID=488446 RepID=A0A6H9TML6_9BURK) HSP 1 Score: 63.5 bits (153), Expect = 4.280e-8 Identity = 41/132 (31.06%), Postives = 67/132 (50.76%), Query Frame = 1
Query: 1 GSPFDNGSDVSNTLDTEANLMMMCADLFGADPDDVDGYVATGSSESNACAIRWACETFSSAPFIGGENMHFSIKRAIKVVGRELLQVKAEKGGEMDIDALGRGLAGCRDQGVSEVCVMLVCGTTMGEAHDNI 396
G PF G+ ++ + E ++ A LF A DD GYV G +E N + A E + H+S+ +A++++G ++ V+++ GEMD D L R A RD+ + V+ GTTM E D++
Sbjct: 50 GDPFQAGTYRVDSRELEREVVKFFASLFNAGDDDYWGYVTNGGTEGNIYGLYIARELHPDGVLYCTADTHYSVSKAVRLLGLTVVTVRSQPHGEMDYDDL-RSKA--RDRLHNPAIVVANLGTTMKEGKDDV 178
BLAST of mRNA_P-littoralis_Contig85.52.1 vs. uniprot
Match: UPI0008295CFC (pyridoxal-dependent decarboxylase n=1 Tax=Nocardia harenae TaxID=358707 RepID=UPI0008295CFC) HSP 1 Score: 62.8 bits (151), Expect = 7.950e-8 Identity = 40/125 (32.00%), Postives = 60/125 (48.00%), Query Frame = 1
Query: 49 EANLMMMCADLFGADPDDVDGYVATGSSESNACAIRWACETFSSAPFIGGENMHFSIKRAIKVVGRELLQVKAEKGGEMDIDALGRGLAGCRDQGVSEVCVMLVCGTTMGEAHDNIDAAIKSSMP 423
E ++ A L PD+ GY+A SE+N + C +A H+SI++A +++ REL+ V A+ G MD AL A CR V+ TTM A D++DA I ++ P
Sbjct: 88 ECAVVDAVARLANGAPDETYGYIAAAGSEANLFGLDRGCTALPAARIYCSSAAHYSIRKAARLMRRELVVVDADPTGRMDPAALA---ATCRRDAGRGAIVVATLSTTMTGAVDDVDAIIAAASP 209
BLAST of mRNA_P-littoralis_Contig85.52.1 vs. uniprot
Match: UPI001E2CD027 (pyridoxal-dependent decarboxylase n=1 Tax=Nocardia asteroides TaxID=1824 RepID=UPI001E2CD027) HSP 1 Score: 59.3 bits (142), Expect = 1.180e-6 Identity = 38/123 (30.89%), Postives = 58/123 (47.15%), Query Frame = 1
Query: 49 EANLMMMCADLFGADPDDVDGYVATGSSESNACAIRWACETFSSAPFIGGENMHFSIKRAIKVVGRELLQVKAEKGGEMDIDALGRGLAGCRDQGVSEVCVMLVCGTTMGEAHDNIDAAIKSS 417
E ++ A L PD+ GY+A SE+N + C A H+SI++A +++ REL+ V A+ G MD AL A CR V+ TTM A D++DA + ++
Sbjct: 87 ECAVVDAVARLANGAPDETYGYIAASGSEANLFGLDRGCVALPDAKIYCSGAAHYSIRKAARLMRRELVVVAADATGRMDPAALA---AACRPGAGRGAIVVATLSTTMTGAIDDVDAIVAAA 206
BLAST of mRNA_P-littoralis_Contig85.52.1 vs. uniprot
Match: A0A4V0HX30_9BACT (Uncharacterized protein n=1 Tax=Gemmataceae bacterium TaxID=2052164 RepID=A0A4V0HX30_9BACT) HSP 1 Score: 58.2 bits (139), Expect = 2.800e-6 Identity = 42/132 (31.82%), Postives = 65/132 (49.24%), Query Frame = 1
Query: 1 GSPFDNGSDVSNTLDTEANLMMMCADLFGADPDDVDGYVATGSSESNACAIRWACETFSSAPFIGGENMHFSIKRAIKVVGRELLQVKAEKGGEMDIDALGRGLAGCRDQGVSEVCVMLVCGTTMGEAHDNI 396
G PF S +T + E ++ A A +DV GYV +GS+E N + A E F A + H+S+ +A++++G E V++ +D+D L + R QG V V V GTTM A D++
Sbjct: 53 GDPFRTRSTGHHTHELEREVVTQFAGWASAPENDVWGYVTSGSTEGNLHGLFLAREMFPDAVVYHSADSHYSVSKAVRLLGVEARVVRSRPDARIDLDHLADEVR--RHQGRPAVVVANV-GTTMKAAIDDL 181
BLAST of mRNA_P-littoralis_Contig85.52.1 vs. uniprot
Match: A0A8J3HSV1_9ACTN (Histidine decarboxylase n=2 Tax=unclassified Catellatospora TaxID=2645785 RepID=A0A8J3HSV1_9ACTN) HSP 1 Score: 55.5 bits (132), Expect = 2.370e-5 Identity = 39/130 (30.00%), Postives = 64/130 (49.23%), Query Frame = 1
Query: 13 DNGSDVSNTLDTEANLMMMCADLFGADPDDVDGYVATGSSESNACAIRWACETFSSAPFIGGENMHFSIKRAIKVVGRELLQVKAEKGGEMDIDALGRGLAGCRDQGVSEVCVMLVCGTTMGEAHDNIDA 402
D G V++T + E ++ DLF A P D GYV G+SE A+ A + + H+S+ +A + + +L+ V+ + G MD+ L LA R++ ++ GTTM EA D++ A
Sbjct: 68 DPGHGVNHTKELEREVVTTIGDLFQA-PRDCWGYVTGGASEGTEHALDEAWQRYPDIVVYTSAAAHYSVAKAARKLKLQLVIVRTDVTGRMDVADLAGELARRRER---PAMIVATAGTTMTEAIDDVAA 193
BLAST of mRNA_P-littoralis_Contig85.52.1 vs. uniprot
Match: A0A1H4ECY2_9FLAO (L-histidine carboxy-lyase (Histamine-forming) n=2 Tax=Flavobacterium TaxID=237 RepID=A0A1H4ECY2_9FLAO) HSP 1 Score: 54.3 bits (129), Expect = 5.880e-5 Identity = 37/124 (29.84%), Postives = 59/124 (47.58%), Query Frame = 1
Query: 58 LMMMCADLFGADPDDVDGYVATGSSESNACAIRWACETF---------SSAPFIGGENMHFSIKRAIKVVGRELLQVKAEKGGEM-DIDALGRGLAGCRDQGVSEVCVMLVCGTTMGEAHDNID 399
L ++ D+F A PD DGY+A G +E+N AI W + S I E+ H+SI +A ++ + L + + + D+ AL + +++G V+ GTTM A DN D
Sbjct: 90 LNVLAVDIFKAQPDSFDGYIAPGGTEANIQAI-WIYRNYFMYKQNAKLSEIAIIASEDTHYSIPKAANLLMLDWLNIPVDFDTRLIDVFALETSIINAKERGKKYFIVVSNMGTTMFGAVDNPD 212 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig85.52.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig85.52.1 >prot_P-littoralis_Contig85.52.1 ID=prot_P-littoralis_Contig85.52.1|Name=mRNA_P-littoralis_Contig85.52.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=161bp MMMCADLFGADPDDVDGYVATGSSESNACAIRWACETFSSAPFIGGENMHback to top mRNA from alignment at P-littoralis_Contig85:242702..243420+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig85.52.1 ID=mRNA_P-littoralis_Contig85.52.1|Name=mRNA_P-littoralis_Contig85.52.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=719bp|location=Sequence derived from alignment at P-littoralis_Contig85:242702..243420+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig85:242702..243420+ >mRNA_P-littoralis_Contig85.52.1 ID=mRNA_P-littoralis_Contig85.52.1|Name=mRNA_P-littoralis_Contig85.52.1|organism=Pylaiella littoralis U1_48|type=CDS|length=483bp|location=Sequence derived from alignment at P-littoralis_Contig85:242702..243420+ (Pylaiella littoralis U1_48)back to top |