mRNA_P-littoralis_Contig847.15.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig847.15.1 vs. uniprot
Match: A0A6H5KC66_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC66_9PHAE) HSP 1 Score: 209 bits (532), Expect = 2.180e-60 Identity = 120/270 (44.44%), Postives = 171/270 (63.33%), Query Frame = 1
Query: 1 MAPRHRKQKVQAELACVDLSTMLEPLRAKFQHLLRLATSSKDD*VWCYIQFKEFVSP---AKLRSVWKDDIDII*TSPYIKVDGEIQDEWRSKPARGKAIIAKPDTHARIVHPVGDESMQHVPREDVVGLLKQMLNIDAFFKFGLKLYSLDQNMNFRAQRHRKDIRLRAADEWTTKDQELNKYIVNDDILENLVEKTCEAVEMFGEDIPEYS----SMYAHDIFANRDSTHLKSREAYEQARNKGLDNIAVTITDRVKWLRSWSAKKIKL 789
MAPRHRK V+AE +CVDL +LEP+ A LL LA + D V Y+Q E VS A+L +++ +D+ SPY ++GE+Q+EWR K R + A DT +V+P+G+ES+QH+ RE VV LLKQ LN+ FFKFGLKLYSL QN+NFR +++ D+R+R D+W T ++K D+IL LVEKT EAVEM+ + + E+ +M+ + RDS+ + ++ YE+ RNKGLD IAV++ R+ L W K++ L
Sbjct: 1 MAPRHRKLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHDGRVCFYMQNTECVSRENLARLTQLFEKHMDVTGISPYSIIEGELQEEWRKKRKRASSTGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVRTKDKWIT----VSKDEAYDEILFMLVEKTHEAVEMYKDGVSEFDMNHFNMFLPVVLEGRDSSVPERKKLYEKRRNKGLDTIAVSVNARLSQLGRWRGKRVTL 266
BLAST of mRNA_P-littoralis_Contig847.15.1 vs. uniprot
Match: Q8QN59_ESV1K (EsV-1-231 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN59_ESV1K) HSP 1 Score: 188 bits (477), Expect = 5.250e-54 Identity = 116/270 (42.96%), Postives = 165/270 (61.11%), Query Frame = 1
Query: 1 MAPRHRKQKVQAELACVDLSTMLEPLRAKFQHLLRLATSSKDD*VWCYIQFKEFVSPAKLRSVWKDDIDII*TSPYIKVDGEIQDEWRSKPARG-KAIIAKPDTHARIVHPVGDESMQHVPREDVVGLLKQMLNIDAFFKFGLKLYSLDQNMNFRAQRHRKDIRLRAADE-WTTKDQELNKYIVNDDILENLVEKTCEAVEMFGEDIPEYS----SMYAHDIFANRDSTHLKSREAYEQARNKGLDNIAVTITDRVKWLRSWSAKKIKLV 792
MA R+RK ++A L+C DLST+LE +R + L+ L +D V+ Y+Q E +S L + + I+ S Y GE+Q+EWR+KP RG K + K DT A V+P+G ES+QH+ V LL+ + ID F+KFGLKLYSL QN+NFRA++ K+ R+ + + W T + + D+IL+ LVEKT EAV MF + IP Y MY+ I A++DS + R+ YE+ RNK L+NIAV++TD + + WS KK KLV
Sbjct: 99 MALRNRKLAIRANLSCFDLSTILESVRTQCPKLIYLGIWYRDGFVYVYVQGAERMSDTMLTKALEGHMVIVHISTYDAPVGELQEEWRAKPVRGNKKVEVKADTTAVFVNPLGKESLQHITSNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWIT----VPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMYSDSILAHKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMGGWSDKKRKLV 364
BLAST of mRNA_P-littoralis_Contig847.15.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE) HSP 1 Score: 196 bits (498), Expect = 2.170e-53 Identity = 113/261 (43.30%), Postives = 164/261 (62.84%), Query Frame = 1
Query: 28 VQAELACVDLSTMLEPLRAKFQHLLRLATSSKDD*VWCYIQFKEFVSP---AKLRSVWKDDIDII*TSPYIKVDGEIQDEWRSKPARGKAIIAKPDTHARIVHPVGDESMQHVPREDVVGLLKQMLNIDAFFKFGLKLYSLDQNMNFRAQRHRKDIRLRAADEWTTKDQELNKYIVNDDILENLVEKTCEAVEMFGEDIPEYS----SMYAHDIFANRDSTHLKSREAYEQARNKGLDNIAVTITDRVKWLRSWSAKKIKL 789
V+AE +CVDL +LEP+ A LL LA + D V Y+Q E VS A+L +++ +D+ SPY ++GE+Q+EWR K R + A DT +V+P+G+ES+QH+ RE VV LLKQ LN+ FFKFGLKLYSL QN+NFR +++ D+R+R D+W T ++K D+IL LVEKT EAVEM+ + + E+ +M+ + RDS + ++ YE++RNKGLD IAV++ R+ L W K++ L
Sbjct: 2138 VRAEPSCVDLGILLEPVVAILPGLLLLAITFHDGRVCFYMQNTECVSRENLARLTQLFEKHMDVTGISPYSIIEGELQEEWRKKRKRASSTGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVRTKDKWIT----VSKDEAYDEILFMLVEKTHEAVEMYRDGVSEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKSRNKGLDTIAVSVNARLSQLGRWRGKRVTL 2394
BLAST of mRNA_P-littoralis_Contig847.15.1 vs. uniprot
Match: D8LP42_ECTSI (EsV-1-231 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP42_ECTSI) HSP 1 Score: 179 bits (454), Expect = 1.070e-51 Identity = 114/270 (42.22%), Postives = 162/270 (60.00%), Query Frame = 1
Query: 1 MAPRHRKQKVQAELACVDLSTMLEPLRAKFQHLLRLATSSKDD*VWCYIQFKEFVSPAKLRSVWKDDIDII*TSPYIKVDGEIQDEWRSKPARG-KAIIAKPDTHARIVHPVGDESMQHVPREDVVGLLKQMLNIDAFFKFGLKLYSLDQNMNFRAQRHRKDIRLRAADE-WTTKDQELNKYIVNDDILENLVEKTCEAVEMFGEDIPEYS----SMYAHDIFANRDSTHLKSREAYEQARNKGLDNIAVTITDRVKWLRSWSAKKIKLV 792
M R+RK ++A L+C DLST+LE +R + L+ L +D V+ Y+Q E +S L + + I S Y GE+Q+EWR+KP RG K I K DT A V+P+G ES++H+ V LL+ + ID F+KFGLKLYSL QN+NFRA++ K+ R+ + + W T + + D+IL+ LVEKT EAV MF + IP Y M++ I A +DS + R+ YE+ RNK L+NIAV++TD + + WS KK KLV
Sbjct: 1 MVLRNRKLVIRANLSCFDLSTILESVRTQCPKLIYLGIWYRDGFVYVYVQGAERMSDIMLTKALEGHMVIEHISTYDAPGGELQEEWRAKPVRGNKKIEIKSDTTAVFVNPLGKESLRHISGNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWIT----VPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMHSDSILAYKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMGGWSDKKRKLV 266
BLAST of mRNA_P-littoralis_Contig847.15.1 vs. uniprot
Match: A0A6H5K0V6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V6_9PHAE) HSP 1 Score: 145 bits (366), Expect = 8.390e-39 Identity = 104/266 (39.10%), Postives = 147/266 (55.26%), Query Frame = 1
Query: 1 MAPRHRKQKVQAELACVDLSTMLEPLRAKFQHLLRLATSSKDD*VWCYIQFKEFVSPAKLRSVWKDDIDII*TSPYIKVDGEIQDEWRSKPARG-KAIIAKPDTHARIVHPVGDESMQHVPREDVVGLLKQMLNIDAFFKFGLKLYSLDQNMNFRAQRHRKDIRLRAADE-WTTKDQELNKYIVNDDILENLVEKTCEAVEMFGEDIPEYSSMYAHDIFANRDSTHLKSREAYEQARNKGLDNIAVTITDRVKWLRSWSAKKIKLV 792
MA R+RK V+A L+C DL T+LE +R + L+ L +D V+ Y Q E +S L + I S + E Q+EWR+KP G K I K +T A VHP+G ES+QH + + LL+ + ID F KFGLKLYSL QN+NFR ++ K+ R+ + + W T +E Y D+IL+ LV+KT EAV + I A +DS + R+ YE R + L+NIAV++TD ++ + WS KK KLV
Sbjct: 1 MALRNRKLAVRANLSCFDLITILESVRTQCPKLIYLGIWYRDGFVYVYAQGAERMSDIMLAKALEGHIVFTDISTFDAPISEPQEEWRAKPVCGNKKIEVKANTTAVFVHPLGKESLQHATSDFIADLLRPLPGIDVFNKFGLKLYSLHQNINFRVRKGDKNARVCCSRKGWITVPRE-EAY---DEILQILVKKTREAVSI---------------ILAYKDSAFPEQRKLYE--RRRILNNIAVSVTDNMRRMSGWSDKKRKLV 245
BLAST of mRNA_P-littoralis_Contig847.15.1 vs. uniprot
Match: A0A6H5K135_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K135_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 8.690e-20 Identity = 76/253 (30.04%), Postives = 115/253 (45.45%), Query Frame = 1
Query: 1 MAPRHRKQKVQAELACVDLSTMLEPLRAKFQHLLRLATSSKDD*VWCYIQFKEFVSPAKLRSVWKDDIDII*TSPYIKVDGEIQDEWRSKPARGKAIIAKPDTHARIVHPVGDESMQHVPREDVVGLLKQMLNIDAFFKFGLKLYSLDQNMNFRAQRHRKDIRLRAADEWTTKDQELNKYIVNDDILENLVEKTCEAVEMFGEDIPEYSSMYAHDIFANRDSTHLKSREAYEQARNKGLDNIAVTITDRVKWL 759
+A HRK +VQA+ +C DLST+LEP+R ++ +L+ L D V+ Y+Q E +S KL S KD + I +PY S P G + GD + E + LL + +D F+KFG+KLY L+QN+NFRA++ K + + V +C ++ A I ++DS + R+ YE+ RNK L+NIAV +TD + L
Sbjct: 6 VAVHHRKLRVQADPSCFDLSTVLEPVRTEYPNLIYLGIWFHDGSVYVYVQSAERMSDIKLTSALKDHMVITNIAPY------------SIPLLGSCNRS------------GDPRL-----EFIADLLNTLHGVDVFYKFGIKLYVLEQNVNFRARKGDKRV--------------------------SGVLPSCHI---------DHFEKPAESILDSKDSLVPEQRKLYERMRNKVLNNIAVNVTDNLSRL 194
BLAST of mRNA_P-littoralis_Contig847.15.1 vs. uniprot
Match: A0A6H5JWA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA4_9PHAE) HSP 1 Score: 58.9 bits (141), Expect = 1.590e-6 Identity = 48/166 (28.92%), Postives = 79/166 (47.59%), Query Frame = 1
Query: 319 IVHPVGDESMQHVPREDVVGLLKQMLNIDAFFKFGLKLYSLDQNMNFRAQRHRKDI--RLRAADEWTTKDQELNKYIVNDDILENLVEKTCEAVEMFGEDIP-------EYSSMYAHDIFANRDSTHLKSREAYEQARNKGLDNIAVTITDRVKWLRSWSAKKIKL 789
IV+P+G ES+ H+ E + LL D F+FG KLY+L++NMNF+ I RL W T+ K + +LENL + EAV+ + + IP E Y IF ++ + Y + G + +A + ++++ + + KK+KL
Sbjct: 131 IVNPIGKESLDHITPELIQELLAGHHGPDVIFRFGAKLYALEENMNFKTDVKSGFISGRLEEDSAWVTQ----RKTVGFSMLLENLKDNFEEAVQTYVDKIPYDDVENFELDMSYIRKIFDLQEDMPV-----YRKFIRDGFNVLASNMAEKLRRIERDTGKKLKL 287 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig847.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig847.15.1 >prot_P-littoralis_Contig847.15.1 ID=prot_P-littoralis_Contig847.15.1|Name=mRNA_P-littoralis_Contig847.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=150bp MQHVPREDVVGLLKQMLNIDAFFKFGLKLYSLDQNMNFRAQRHRKDIRLRback to top mRNA from alignment at P-littoralis_Contig847:69785..70579+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig847.15.1 ID=mRNA_P-littoralis_Contig847.15.1|Name=mRNA_P-littoralis_Contig847.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=795bp|location=Sequence derived from alignment at P-littoralis_Contig847:69785..70579+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig847:69785..70579+ >mRNA_P-littoralis_Contig847.15.1 ID=mRNA_P-littoralis_Contig847.15.1|Name=mRNA_P-littoralis_Contig847.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=450bp|location=Sequence derived from alignment at P-littoralis_Contig847:69785..70579+ (Pylaiella littoralis U1_48)back to top |