mRNA_P-littoralis_Contig75.123.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig75.123.1
Unique NamemRNA_P-littoralis_Contig75.123.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig75.123.1 vs. uniprot
Match: A0A6H5JRI3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRI3_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 2.600e-11
Identity = 57/162 (35.19%), Postives = 83/162 (51.23%), Query Frame = 2 
Query:  791 FMCTQASAIHVGMRHPQAKKDEGERLLKLLLEPSASVTKMPWEGVGMGLVW--VADFKTGRAEFGIQQQRTTPID---DGFATDDEGKGEGRRGALVRKRYSYRQKAVAIERLRECQQQAAEIEEKYHMGPLQFAAQVAGVPQSNLHKWAGDEAVVVGKAAE 1261
            F+  Q   IHV  +H  A    G RL ++L +      + PW   G G  W    D  TG A F +Q++R   +D   DGF    + K +  RGA+ RKRY  R KA+ + +LR  Q+ AA++ ++  + PLQ+      V  S + KWA DEA +V  AA+
Sbjct:    3 FVNEQGLGIHVKTQHSNATMSNGLRLQRMLGKTPKGYVQ-PWGEAGPGRCWHVKVDGATGAASFVLQRKRFRDLDLESDGFT---DRKVKETRGAVKRKRYDVRFKALVVTQLRLLQEDAADLFKEEQLTPLQYLEDRLKVNYSLIVKWAQDEANIVQSAAD 160
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig75.123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JRI3_9PHAE2.600e-1135.19Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig75contigP-littoralis_Contig75:393836..396036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FI08
PFAMsDDE_1
Model size1346
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue9.25e-25
EggNOG OGs2DCSR@1|root,2S5KN@2759|Eukaryota
Cds size1113
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791549.7781885-UTR-P-littoralis_Contig75:393835..3940371680791549.7781885-UTR-P-littoralis_Contig75:393835..394037Pylaiella littoralis U1_48UTRP-littoralis_Contig75 393836..394037 +
1680791549.8354864-UTR-P-littoralis_Contig75:396005..3960361680791549.8354864-UTR-P-littoralis_Contig75:396005..396036Pylaiella littoralis U1_48UTRP-littoralis_Contig75 396006..396036 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791549.7973564-CDS-P-littoralis_Contig75:394037..3945141680791549.7973564-CDS-P-littoralis_Contig75:394037..394514Pylaiella littoralis U1_48CDSP-littoralis_Contig75 394038..394514 +
1680791549.8090944-CDS-P-littoralis_Contig75:394837..3954221680791549.8090944-CDS-P-littoralis_Contig75:394837..395422Pylaiella littoralis U1_48CDSP-littoralis_Contig75 394838..395422 +
1680791549.8216517-CDS-P-littoralis_Contig75:395954..3960051680791549.8216517-CDS-P-littoralis_Contig75:395954..396005Pylaiella littoralis U1_48CDSP-littoralis_Contig75 395955..396005 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig75.123.1prot_P-littoralis_Contig75.123.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig75 394038..396005 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig75.123.1

>prot_P-littoralis_Contig75.123.1 ID=prot_P-littoralis_Contig75.123.1|Name=mRNA_P-littoralis_Contig75.123.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=371bp
MHVHVVFCWAPTRRCVFTHVCVMDAAAVLALKSKLASLKHKGALTTEHFS
LLKAKAKDRLVTEQVLQNLSSLWNLRCDGSVEEEDEEDLQMIFKELAPRE
KDSGAEEPTAIQRGRLAPAAVSGRPASKWEREKASQLSRSAASAHQHIIT
SFVKGSGGPIERTRNDGSVELVAGVVATPLPTTGVPTVQCPYCPKKFMCT
QASAIHVGMRHPQAKKDEGERLLKLLLEPSASVTKMPWEGVGMGLVWVAD
FKTGRAEFGIQQQRTTPIDDGFATDDEGKGEGRRGALVRKRYSYRQKAVA
IERLRECQQQAAEIEEKYHMGPLQFAAQVAGVPQSNLHKWAGDEAVVVGK
AAEKGVRQDRPPKKTKHGRF*
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mRNA from alignment at P-littoralis_Contig75:393836..396036+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig75.123.1 ID=mRNA_P-littoralis_Contig75.123.1|Name=mRNA_P-littoralis_Contig75.123.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2201bp|location=Sequence derived from alignment at P-littoralis_Contig75:393836..396036+ (Pylaiella littoralis U1_48)
TTCAAAATAATAAGAAAGTGCCCAGCCTGGGCACTCCCTTGGAAATAAGA
AAGTTGGCCCCTCTGCCAAGGCTAGCCTGAGATGTCATGCCCACCAATCG
TGGCGCATGTGCAGCTCCACATCTCCGCACAAACTGTAACTACTGTAGAT
TCGGATCCAATATGAAGACCCCCTCCCCCCCTCTTTCTGAGATTTTTGGA
CTATGCATGTGCACGTAGTGTTTTGCTGGGCCCCCACCCGCCGCTGTGTT
TTTACACATGTTTGCGTCATGGACGCTGCGGCTGTGCTTGCGCTGAAATC
GAAGCTAGCGTCGTTGAAACACAAAGGGGCTTTGACCACTGAGCACTTCA
GTCTTCTAAAGGCGAAAGCGAAGGATAGGTTGGTAACTGAGCAAGTGTTA
CAGAATCTCTCCAGTCTCTGGAACCTGCGGTGTGATGGCTCCGTCGAAGA
AGAAGATGAGGAGGACCTGCAGATGATCTTCAAAGAGCTGGCACCAAGAG
AGAAAGACTCGGGGGCGGAAGAACCCACCGCTATCCAACGGGGCCGTCTC
GCTCCTGCTGCAGTTTCTGGTCGCCCGGCCTCGAAGTGGGAGAGGGAAAA
AGCGTCACAGCTGTCAAGATCCGCCGCTTCTGCACATCAGCACATCATTA
CCTCCTTCGTCAAAGGATCCGGCGGGCCGGTGAGTTTGCAAAATAAAAGC
TCGGCTGCCGCATAGTGCCTGCTGTAATTTACGGCGGAATTTTCAGTCGC
GTAGCTGCGCCGCAGACGTTGAAACATGAAAAAAAGTGTGTTTCAATCGA
CCACTGCTGTAGTCTACAGCAGTACCACTCACACCATGATGCAAGAGGTT
AGCTATGCTTCTATTTTTCCGTATGTTTTCTCACCGCGTGCACTCCGTAG
CATCAAGTCTGAAGGCTTGCGCTGCTTTGTTCTCCGTCTAACCGCTGCTA
TCCGAATGCTGTGTCACTACTGGGTTTCTCCTTTCGATCTCGTCTGTCGC
AGATTGAGCGCACTCGGAACGATGGGTCTGTTGAGCTTGTAGCGGGTGTT
GTGGCCACCCCACTGCCCACCACTGGCGTACCGACTGTCCAGTGCCCCTA
CTGCCCCAAGAAGTTCATGTGCACCCAGGCATCCGCGATCCACGTCGGAA
TGCGCCACCCTCAAGCCAAGAAGGACGAGGGGGAGCGGCTTCTAAAGTTG
CTGCTCGAACCGTCAGCATCTGTCACCAAGATGCCATGGGAGGGAGTGGG
TATGGGGCTGGTTTGGGTCGCTGATTTCAAGACGGGGCGCGCGGAGTTCG
GCATTCAGCAGCAGAGAACCACACCTATCGACGATGGGTTCGCCACTGAC
GACGAGGGCAAGGGAGAGGGACGCCGCGGTGCGCTGGTGCGAAAACGGTA
CAGCTACCGACAAAAGGCTGTGGCGATCGAGCGCTTGAGGGAATGCCAGC
AGCAAGCGGCGGAGATTGAGGAAAAGTATCACATGGGGCCGCTTCAGTTC
GCGGCACAGGTGGCCGGCGTTCCACAGTCTAATCTACACAAGTGGGCTGG
CGACGAGGCAGTCGTCGTTGGAAAGGCAGCTGAGAAGGTGACCAGTGGCC
TTCTGGGAAAGTCTGCCAAGAGGTCGTGGTTCCCCAAAGCCGAGCAAGCT
CTATACTGTACACGTAACCGCCCGGTCAAATATTTTACTCTTGCACGTGC
GTGGGATTTCGAATGTTACCAAATGAACCACTACTGCCCTAAGGATCCCC
TCCTTCGTACTCTTTGGGAATTGTTGATTTTCCAGCCGTCGATGAGAGGA
TATCATGTCCCATCCACGCTACAGCAGTAGTCGTCGAGACGTACGCAAGC
AACCGCTAAGCCCTTGTGAACTCTGAAATGGGGTGTCTAAAACGGAAATG
AGCATTTGAGGAGGAAAACAGCGATCGCAGTTATACCGCTAAGTGCTGCT
ATAGGCAAGCGTCCTCAGGTTGGGTTGCGGCACCGTTACATACCATTCCA
ATGACTCGGACGGTGGATCTAGTCCTAGCGGCATACATTTGCCTGAGTAT
GATATGCGTACGATGTGGCTACAGCCATCCATCTTATCCTCGAAACGACC
TCCTGTGCTCATCGTTCAGGGTGTGCGGCAAGATCGCCCGCCGAAAAAAA
CAAAGCACGGAAGATTCTAAAGCTTGGACTCGGCCCCCGCAGCGTGCTCG
C
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Coding sequence (CDS) from alignment at P-littoralis_Contig75:393836..396036+

>mRNA_P-littoralis_Contig75.123.1 ID=mRNA_P-littoralis_Contig75.123.1|Name=mRNA_P-littoralis_Contig75.123.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1113bp|location=Sequence derived from alignment at P-littoralis_Contig75:393836..396036+ (Pylaiella littoralis U1_48)
ATGCATGTGCACGTAGTGTTTTGCTGGGCCCCCACCCGCCGCTGTGTTTT
TACACATGTTTGCGTCATGGACGCTGCGGCTGTGCTTGCGCTGAAATCGA
AGCTAGCGTCGTTGAAACACAAAGGGGCTTTGACCACTGAGCACTTCAGT
CTTCTAAAGGCGAAAGCGAAGGATAGGTTGGTAACTGAGCAAGTGTTACA
GAATCTCTCCAGTCTCTGGAACCTGCGGTGTGATGGCTCCGTCGAAGAAG
AAGATGAGGAGGACCTGCAGATGATCTTCAAAGAGCTGGCACCAAGAGAG
AAAGACTCGGGGGCGGAAGAACCCACCGCTATCCAACGGGGCCGTCTCGC
TCCTGCTGCAGTTTCTGGTCGCCCGGCCTCGAAGTGGGAGAGGGAAAAAG
CGTCACAGCTGTCAAGATCCGCCGCTTCTGCACATCAGCACATCATTACC
TCCTTCGTCAAAGGATCCGGCGGGCCGATTGAGCGCACTCGGAACGATGG
GTCTGTTGAGCTTGTAGCGGGTGTTGTGGCCACCCCACTGCCCACCACTG
GCGTACCGACTGTCCAGTGCCCCTACTGCCCCAAGAAGTTCATGTGCACC
CAGGCATCCGCGATCCACGTCGGAATGCGCCACCCTCAAGCCAAGAAGGA
CGAGGGGGAGCGGCTTCTAAAGTTGCTGCTCGAACCGTCAGCATCTGTCA
CCAAGATGCCATGGGAGGGAGTGGGTATGGGGCTGGTTTGGGTCGCTGAT
TTCAAGACGGGGCGCGCGGAGTTCGGCATTCAGCAGCAGAGAACCACACC
TATCGACGATGGGTTCGCCACTGACGACGAGGGCAAGGGAGAGGGACGCC
GCGGTGCGCTGGTGCGAAAACGGTACAGCTACCGACAAAAGGCTGTGGCG
ATCGAGCGCTTGAGGGAATGCCAGCAGCAAGCGGCGGAGATTGAGGAAAA
GTATCACATGGGGCCGCTTCAGTTCGCGGCACAGGTGGCCGGCGTTCCAC
AGTCTAATCTACACAAGTGGGCTGGCGACGAGGCAGTCGTCGTTGGAAAG
GCAGCTGAGAAGGGTGTGCGGCAAGATCGCCCGCCGAAAAAAACAAAGCA
CGGAAGATTCTAA
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