mRNA_P-littoralis_Contig745.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig745.7.1
Unique NamemRNA_P-littoralis_Contig745.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig745.7.1 vs. uniprot
Match: D7FL62_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL62_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 1.030e-59
Identity = 112/126 (88.89%), Postives = 118/126 (93.65%), Query Frame = 2 
Query:  185 MHGALATLGLVVAFMAAASNAFVVPGPSKMVSGRSTRASTSQVIVMGRGDTRTTKGKRMRHSYGKCRPQKQKEVIYFEGEIVKKAAPVARRWENVEYDEASMPKPAPVEAAVAEEVVVEVEAEGAV 562
            MHGALATLGLVVA MA+ SNAFVVPGPS++VSGRSTRASTSQVIVMGRGDTRTTKGKRMRHSYGKCRPQKQKEV+YFEGEIVKKAAPVARRWEN+EYDEASMPKPAPVEAA AEEV    EA+ AV
Sbjct:    1 MHGALATLGLVVAMMASVSNAFVVPGPSQVVSGRSTRASTSQVIVMGRGDTRTTKGKRMRHSYGKCRPQKQKEVVYFEGEIVKKAAPVARRWENIEYDEASMPKPAPVEAA-AEEVTEAEEADSAV 125
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig745.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FL62_ECTSI1.030e-5988.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig745contigP-littoralis_Contig745:68341..73376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog981085.XP_010091191.1
PFAMsRPS31
Model size1921
Max annot lvl35493|Streptophyta
KEGG koko:K19033
Hectar predicted targeting categorychloroplast
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009536,GO:0009657,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0032544,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576
Exons4
Evalue3.97e-05
EggNOG OGs2E0P3@1|root,2S834@2759|Eukaryota,37X8F@33090|Viridiplantae,3GMBS@35493|Streptophyta,4JQTN@91835|fabids
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_005370.1
Description30S ribosomal protein S31
Cds size477
COG categoryJ
BRITEbr01610,ko00000,ko03011
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig745.7.1prot_P-littoralis_Contig745.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig745 69601..73192 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791540.6254303-UTR-P-littoralis_Contig745:68340..696001680791540.6254303-UTR-P-littoralis_Contig745:68340..69600Pylaiella littoralis U1_48UTRP-littoralis_Contig745 68341..69600 -
1680791540.69992-UTR-P-littoralis_Contig745:73192..733761680791540.69992-UTR-P-littoralis_Contig745:73192..73376Pylaiella littoralis U1_48UTRP-littoralis_Contig745 73193..73376 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791540.644014-CDS-P-littoralis_Contig745:69600..696211680791540.644014-CDS-P-littoralis_Contig745:69600..69621Pylaiella littoralis U1_48CDSP-littoralis_Contig745 69601..69621 -
1680791540.6551054-CDS-P-littoralis_Contig745:69852..701291680791540.6551054-CDS-P-littoralis_Contig745:69852..70129Pylaiella littoralis U1_48CDSP-littoralis_Contig745 69853..70129 -
1680791540.6660416-CDS-P-littoralis_Contig745:71413..714661680791540.6660416-CDS-P-littoralis_Contig745:71413..71466Pylaiella littoralis U1_48CDSP-littoralis_Contig745 71414..71466 -
1680791540.6817272-CDS-P-littoralis_Contig745:73066..731921680791540.6817272-CDS-P-littoralis_Contig745:73066..73192Pylaiella littoralis U1_48CDSP-littoralis_Contig745 73067..73192 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig745.7.1

>prot_P-littoralis_Contig745.7.1 ID=prot_P-littoralis_Contig745.7.1|Name=mRNA_P-littoralis_Contig745.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=159bp
MHGALATLGLVVAFMAAASNAFVVPGPSKMVSGRSTRASTSQVIVMGRGD
TRTTKGKRMRHSYGKCRPQKQKEVIYFEGEIVKKAAPVARRWENVEYDEA
SMPKPAPVEAAVAEEVVVEVEAEGAVEEAGAVVEEPAAEEPAAEEPAAEE
PVSRLIWV*
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mRNA from alignment at P-littoralis_Contig745:68341..73376-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig745.7.1 ID=mRNA_P-littoralis_Contig745.7.1|Name=mRNA_P-littoralis_Contig745.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5036bp|location=Sequence derived from alignment at P-littoralis_Contig745:68341..73376- (Pylaiella littoralis U1_48)
CGACGCGCAATACGTGCTCTTCAAGCTCTCTGTGCCTCTTCGCGTGACAG
AGTAGTCTTTCGAACCGCACACTACCACCACCACACGCCTGCGTCGTGCT
TGCATCGTTAGAGGGGCCAGCCCTATCTCGCTCGCGTTTCTTCGTGCAAT
CGATCAGGCGTCACATCACTTTTCCGGTGAGACCATGCACGGAGCTCTGG
CCACCCTCGGTTTGGTTGTTGCCTTCATGGCAGCAGCCTCGAACGCCTTC
GTCGTGCCTGGACCGTCCAAGATGGTGTCTGGACGATCGACACGCGCCTC
GACGTCTCAGGTATAGCTGTTGTGGCTCGAATACAGCAGTAGCGTACCCG
TTGGAGTCGGTTCGCGCAAGTGGGATCAATCGATTCACATGTGTAGCACC
AGTCAGACAGCAGGAGCGAGAATCAACAGCTACGAACTGCTGGACTTCTC
GTCGACTTGATGTTTGCGATGTCAGCAGCACATGGCGTCGGCGAACCACG
TCTGCCGCAGTCCTTGAAAGCTGGGCGCTGTGTTTGATCACCATGCTATG
CGAAGAGCCATCTCCTGCGTGTGATGTCTGTTGTCCGTTGTAAGCAACGC
ATTCTCCTTCAGGATTTGACGTTTTTTGTTCACCACCCTCTGCGAAAAGC
GAAAAACATGCAACCAGAGGCGGGTAGGATGGCACGTGTGTTGCTGCTGC
TGTCTGTCATCACAGACTTCCATGGGACCGGTAGCAGTTCGTAAGTTCGT
GTAGCGGTCATTATTTCATTATTTTGCAAGTAACGAAGTGCACACCAAAA
AATTTCCATATTCCTGCTTTCCCTCCAATTCCGTTACATCTACAAGTCAT
GGGGTGCTACTTCACGGCACTACACAACTGCCGTTGAAGCACTACAGCAT
GTAGTCAGGATGCATGCGTATTTGCCAACTGCGGGTTCGTAAGCAGACCC
CCTAGACTCCTGTACAACAGCAGTAGGCTTCATCTCAAGTAAACTCATAC
AAGTAGGCGTCAGCTACAGATGGACCCTTATTCAAAACCTTGGTTTGGTT
GATTGTACAGCAACATCCTTATTTATATTTGAGTCTGACCAACACCCGAC
TGAACTACCGCCGTTCTATGGATGGTACTGCTGTACAGTACATACTTCAC
GCGTTGCTCCATTTCACCCCGTCTATGTACCTACTTTATCCAGACTTTTT
TGCCACGGACGCTACCTTTGCATTCTATTAAGGGTGTTTTTTGACGTCGA
CCTGGTCTTGTTGCACTTGCGGCACTTGATGTAGACGCACGTGTCTTCTG
GTGTTGCGTTTGTCAAATTGACTGCGTGAAAACACAAAAAGTTGTGCACG
TATGTCATATCATACCGATATACCGTTGCATGTGTCCACGTATACGAGTA
TTTCGTACCGTATGATACCAGTGTTTGGAGTTACCGTCGTTTCCTGGCAC
AGCCGGGAGGTATCATATCATATCATAAGAGTGAGAAAACGATCGAGAGC
GGGCCAAGCGACGCACGAACATCGAATCCGCCCAATGCACAGCATTGTCG
ACGGGGTGCTCCTGTTCAAGGCACCAGTCACGTATCCCCCCCTGTGTTGT
CCACCCCTTCACGCCTTCGGGGGGGGGGGGTTTCTGTACGTTACGATACG
GGCTTTCGTTCACACTGCTGTACCGGTACATTCTGCGGAGTCTGCTGCTG
CAATACTAGCCTGAATTATGCCTCGTTTGTACGGTACCGTACCGTACCGT
TCCTGACCGTACCGTTTACCGCCTCGATCAATTGCCGCCGCACTCGTGGG
ACCTCCGGACCCGACAAGGCCTCCACACCCAAAATGTTTTCTCTAACAAC
TCCTTCTTCTTCGCTTTCTCGACTCCCCCTCCGTCGTCACTGCTGTTTGG
TCGTGTGCAGGTGATCGTCATGGGCAGGGGAGACACTCGCACAACGAAGG
GCAAGCGCATGAGGTGAGCAAGCGGTTTCGGGTTTCGGAATTAGGCAACT
AAACGCCAAAAGGGTTTCACGGTTTATGCTGTGGCGTTCTGCTGTTGTGG
ACTCATTGCGATTGAAAGCTTCTGGTACACTTGACGACATTTGAGGCGCC
TAAAATTTCATCAAGACCCCGCACGTTTTATCAGGTCTATGCGGGGGCTG
GATGTAGCGAGATCAAAGGGAATACCCACCCCACATAAACCCCCCTTCCC
CAAATCCTCGCACGGTGCCCCCCCCACTCCCCCCGCCGGCCGTATTGTGG
GTCAAAGGGAAAAAAGTGAGCGTGGCACTTTGTGGAGAGAGAAAAGGCTA
TCCAGAACTCGAAGTATTGAGCTCCAGACTCTGACCAACAAAGCCAGCAC
AGCAGTAACGAAAGCGGGGATATGCCTGCGGTAGAGCATTGCCCCGTCTA
AATTATTGGGACCCGGGTACCCGTCTTGGCTCGAGGGGATGGACCCATCG
GTGTTTCCGGGTATCCGGGTAACAGGGAAGTGGAATACGGTGCCCCCTTT
CTCGGAGTAGTAAAATAGGGTGCCCCACAAAAACATATCAAGGCGGCGCT
ATGTGTGATGTCAATGGGGATACCCCATTACCGAAATGGGGCACCGTACA
TGCTACCCGGAGTACCGGGACCCGGGTAATCAGGTACCCGGGTAATTTCT
AGACGGGGCAATGCTTTGGTTTGCGGTGTTGTGAGTAGATTTCAGGAGAA
CCAAAGTGCAGCTTGGACTAGGCCGGCCGTGCAGCGCGGCTCCCGACGGA
CCTACATTACACAGGGGGTGGTGACTGATGACAAAGGATGGCTGTTGTCT
CGTACCTCGGTTTGATATACCGGCTGTTCTGCCGTTGTGCCGTGATATCC
AACGGTGACACGCCACGTGTTTCGCATGCCGCGCTCGGCGATGATATTTC
AACTCGTTTAACATGGCACGATCTTCCTTAAGTGCCTCGTGGCAACATAG
CAGCAACATGTCATAGCACGACCTTCAGTCAGCTCTTTGTGGTACAGATA
CCATGACCGAGATGTCGCCCCAGCGCATGTGACGTCACGTGATGGCCCCC
GGAACACCCCACCTTGACTGCTGTTCGCCCTTTTCCTGTTGCATGCTATC
ATATCGTAGCCCCCCACTCCCACCTCACCGTCCTCTCTCCCTCAAAAATA
AATCCATTCGCGACATATTCTGCCACCCCTGACTGATCAACCCTACGAAC
CCCAAACGCATGCCGTGTCGTACGGCAATAAATGGCCTCTCACGCAGGCA
CTCTTACGGTAAATGTCGCCCCCAAAAGCAAAAAGAGGTGATCTACTTCG
AGGGAGAAATCGTCAAAAAGGCGGCGCCCGTGGCCAGGAGGTGGGAAAAC
GTCGAGTACGACGAGGCCTCGATGCCCAAGCCTGCGCCGGTGGAGGCGGC
TGTAGCAGAAGAAGTCGTCGTGGAGGTCGAAGCCGAGGGCGCGGTGGAGG
AGGCTGGGGCTGTAGTAGAGGAGCCTGCCGCTGAGGAGCCTGCCGCCGAG
GAGCCTGCCGCCGAGGAGCCTGTCGCGAAAGAGGAGGTTGCTGCCGAGGC
GTAGATCGTGCCGCTCGTTGTTTATCTTATTGGCGTACCCCCCCCCCCCC
CCCCCCCTCCCTTTCCTGTTTTCTTTTCGACCGTCCCCCCCCTCAGGGTG
GACGAATGAAATGAAAGGGTTCCCCCGCATAAAAATGGACTCGGGTGGTT
CCAGGTAGCTGGGCGCCCGATGGTGAAGTCTCCTGAAGCCTCATGATATT
GAAAGAGTCGTTTGATCTGGGTTTAAGCGGTTTAGATCGCTGTCGTACCT
CTCAGTCTTGGTAGGGCAGAGTTTGGTCCGATAATTACAATACCGCTGTG
ATGAAGAGCTGATGGCGCTGAGATCGGGTGCACGCATCGGGAGAAGCGTG
TGTGCGAAATTTGCACACGTGGCAAAGGGGAATGCCGTAGAGAGATTTTT
GCAGCCTTATTTTTTGGATCGCAAGGAGGAAGCTGACATGGGTGGAGATG
ACATGCTGCATACCATGTTTTCTTGCATCGCTCATCACAGAGTGTGTCCA
TGTCGGAGATACGTTGCACCAAGCAGGAAGGGGCGGATAGAATATACTGC
TGTGTATCCTGTGTGTCGTGGAACGTACAACCAAAGGCTTGGGCATTGGT
TCCTATATTGTCGGTGGCTCGCGGGCCGCTTGTTTTCGGCGATGAAGGTT
GTCCCTTTCATGTGACCGGTCTGGTGCAGGCTGGATTTTTCTCAGCACTC
GGAAACCGTCCGTCTTGAAATGTCTTTTAAATGTCGAAAGCGTTTCCCCC
CAAAGCTCACGGAGGGAGGCGTTGTCGTACAGCTGCTGCAACAGTCGGGG
CTGCTGTCCGTTGATTTTTGAGCGAAGATTTTTCGAAATGGTTTATTTTT
CGAGGCAGGTGGGGTGCTTCCCCCAACAGACAGCTGGGCGAAAGTTTGTG
GTGCTTCTATATGTTGTGCTGGCAAAAACTACCCACAGCGAATGATAATT
ACGAATATTTAAGAACCTCAATCGGCTATGCACGTACCGGTATCATTCTG
TTCGGTTTTCGTGTTTTCGTGCGCAAGGAATGCTAAAGGTGTGAGGCGTG
GAGCCTGATCAGGATGCGTGGGGAACAGAGCCCTCAACGAGTACATCCCG
AGGCGCACCGTTGTTGATTATTTTCATTTTTCCGCACTGCTTTCTCTGCT
GCTACGGACCCCCTGAAATCTTGGTGCTGTTTGTTGGAGGACGCCACATT
GAACGTTCCTCGTCGCCGATGGTTGCTGATCGTGAAAAGTTGTCAGCAAA
TTTTACTCCTGAGTCTGATTTATTTACTCTGTAGATAGATGCCGCCCATT
TTGCGGGGCTCTTGTCTCTCCCTAGTAAATTTGAAACCATGGCGACACTG
CATGTACGTCGAAGAGCGCGGGCTTGACTCGGTTATTGTCATCCAAGTCT
TCCAACACCGTTTCTCTCACTCGAGTTCGACCTCTAAAAAGAACTTTCGT
CTCTTCTCACCCTCAGCGCAGTCAAGCGAAACTCTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig745:68341..73376-

>mRNA_P-littoralis_Contig745.7.1 ID=mRNA_P-littoralis_Contig745.7.1|Name=mRNA_P-littoralis_Contig745.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=477bp|location=Sequence derived from alignment at P-littoralis_Contig745:68341..73376- (Pylaiella littoralis U1_48)
ATGCACGGAGCTCTGGCCACCCTCGGTTTGGTTGTTGCCTTCATGGCAGC
AGCCTCGAACGCCTTCGTCGTGCCTGGACCGTCCAAGATGGTGTCTGGAC
GATCGACACGCGCCTCGACGTCTCAGGTGATCGTCATGGGCAGGGGAGAC
ACTCGCACAACGAAGGGCAAGCGCATGAGGCACTCTTACGGTAAATGTCG
CCCCCAAAAGCAAAAAGAGGTGATCTACTTCGAGGGAGAAATCGTCAAAA
AGGCGGCGCCCGTGGCCAGGAGGTGGGAAAACGTCGAGTACGACGAGGCC
TCGATGCCCAAGCCTGCGCCGGTGGAGGCGGCTGTAGCAGAAGAAGTCGT
CGTGGAGGTCGAAGCCGAGGGCGCGGTGGAGGAGGCTGGGGCTGTAGTAG
AGGAGCCTGCCGCTGAGGAGCCTGCCGCCGAGGAGCCTGCCGCCGAGGAG
CCTGTCAGTCGTTTGATCTGGGTTTAA
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