mRNA_P-littoralis_Contig74.85.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig74.85.2 vs. uniprot
Match: D7FQY5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQY5_ECTSI) HSP 1 Score: 628 bits (1619), Expect = 1.030e-216 Identity = 337/530 (63.58%), Postives = 402/530 (75.85%), Query Frame = 2
Query: 197 LFLCSRSNVACTIRDRGVEVECDLTFSHIPKVLKGCLHTICQNCAEDGLQRSENASSIKCPLCGLTTSDVITTSALQDNIMALQDLHRKNSYCDFCDDDTVQASHVCDECESLLCTFHVKAHAVSRGTKSHTVASLTEKARKGAELGILHCVPITCARHAGVPAKLFCSEPCGATICHNCSVTEHSGHTVYLADSEEVELLHRTGLTRRGVSLGHSLAKVQGALDAVEAVKTGVEQHSRMAEKSAVQVFASIRAAVDSREKAVLENLQADRASKLQDLNKQLNELTETIKAYAAALDTTNESLKYLHGNQLLAMEPTLRECLDKHEANFLSEQLEPCSGDRVEFEYDRDIAIALRLGISQVGYLAQTKADFGSTSDRTHKRGKPRAPEQEVHTSWTSNGHDIHFTLAAIVGARPQEELTLATPTDVVIVEIRNGSELEFLKNGKPGPVIGRVALHTKLKGARHLKYESEHFFESLSQQAAPKWQQRKQLQEGKQQQELSSCHEID-DGIPTVRFTKTLRVSGRRQRVEGS 1783
+FL R + +R + + DLTFSHIPKVLKGCLHTICQNCAE+GLQRS++ SSI CPLCG++TSDV +TSALQDNI+ALQD+HRKNS+CDFCDD +ASHVC EC SLLCTFH+ AH+VSRGTKSH V SL + H V ITCARH V AKLFCSEPCG TICHNCSV EHSGH+V+ +DS EVE +HR GLTRRGVSLGH LA+V+G LDAVEAVKTGVE+H+R+AE + VQ F++IRAAVDSREK +L+NL+ADRA K QDLN QL +L + ++AY ALD+TN SL+ LHG+Q LAMEPT+RECLD EA F S +L PC DRVEFE+DR IA ALR GIS++G + K+ K APEQE+H S T + H+IHF+LAAIVGARPQE TLA+PTD VIVEIR+GSE +FLK+G GPVIGRVALHTK KGA+HL YE+EHFFESLSQ+A P Q RKQ + +++++ D D +P VRFTK LRV GRR EGS
Sbjct: 8 IFLLFRRALLTHVRG-DMAIGGDLTFSHIPKVLKGCLHTICQNCAEEGLQRSKDGSSIMCPLCGVSTSDVTSTSALQDNIVALQDVHRKNSHCDFCDD-VAKASHVCHECASLLCTFHMTAHSVSRGTKSHRVVSLKNREAS-------HRVQITCARHRDVEAKLFCSEPCGTTICHNCSVAEHSGHSVFFSDSAEVEQVHRAGLTRRGVSLGHRLARVRGGLDAVEAVKTGVEKHTRLAESATVQAFSAIRAAVDSREKEILKNLRADRAQKTQDLNAQLAKLGQVMRAYEIALDSTNTSLERLHGDQFLAMEPTIRECLDAREAEFPSLELTPCVEDRVEFEHDRSIANALRQGISRLGCVVNAVRP-------RKKKEKSTAPEQELHASSTPSEHNIHFSLAAIVGARPQEA-TLASPTDKVIVEIRSGSEHDFLKSGTTGPVIGRVALHTKFKGAKHLAYETEHFFESLSQRATPTRQSRKQQHQAEKERQKQPTPSRDGDCVPAVRFTKVLRVFGRRG--EGS 518
BLAST of mRNA_P-littoralis_Contig74.85.2 vs. uniprot
Match: UPI0018855882 (E3 ubiquitin-protein ligase TRIM33-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018855882) HSP 1 Score: 62.8 bits (151), Expect = 1.840e-6 Identity = 49/189 (25.93%), Postives = 82/189 (43.39%), Query Frame = 2
Query: 257 ECDLTFSH---IPKVLKGCLHTICQNCAEDGLQRSENASSIKCPLCGLTTSDVITTSALQDNIMALQDLHRKNSYCDFCDDDTVQA--SHVCDECESLLCTFHVKAHAVSRGTKSHTVASLTEKARKGAELGILHCVPITCARHAGVPAKLFCSEPCGATICHNCSVTEHSGH---TVYLADSEEVELL 799
C++ H PK+L GCLHT+C CA+ +++ +C LC +T+S + L + ++ Q +++ C C + QA S C EC + LC ++AH V++ T H + + C C+ H +C + C C C ++ H H T+ D+E E L
Sbjct: 77 SCNVLLRHGECTPKLLTGCLHTVCAPCAQQC-----SSAGFQCQLC-MTSSPSLLDHPLVEELLQRQHEEQRSRLCGQCAERGGQAAASGTCTECSTDLCNVCIQAHRVTKPTWGHNIDVCQDS-----------CAQQQCSSHYKTFDN-YC-DTCNTLGCGECILSAHRSHQSCTLLAKDAEVKETL 246
BLAST of mRNA_P-littoralis_Contig74.85.2 vs. uniprot
Match: A0A0F8B4S9_LARCR (Tripartite motif-containing protein 16 n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A0F8B4S9_LARCR) HSP 1 Score: 59.3 bits (142), Expect = 2.840e-5 Identity = 69/301 (22.92%), Postives = 123/301 (40.86%), Query Frame = 2
Query: 302 CLHTICQNCAEDGLQRSENASSIKCPLCGLTTSDVITTSALQDNIMA---LQDLHR---------------KNSYCDFCDDDTVQASHVCDECESLLCTFHVKAHAVSRGTKSHTVASLTEKARKGAELGILHCVPITCARHAGVPAKLFC--SEPCGATICHNCSVTEHSGHTVYLADSEEVELLHRTGLTRRGVSLGHSLAKVQGALDAVEAVKTGVEQHSRMAEKSAV---QVFASIRAAVDSREKAVL------ENLQADRASKLQD-LNKQLNELTETIKAYAAALDTTNESLKYL 1114
C H+ C NC + + CP C T I L N M ++DL + ++ CDFC ++A C +C+ C H++ H S H + ++K ++ C+ H V K+FC + C IC+ CS+ EH GH + +A+ E E R +++ + ++Q V+ ++ VE + A+K+ + + F + V+ R V EN++ R LQ+ L +++ EL A L T++ +++L
Sbjct: 29 CGHSYCMNCIKSHWDEEDQKEIHSCPQCRQT---FIPRPVLVKNTMLADLVEDLKKTGLQAAPADQCYAGPEDESCDFCTGRKLKAVKSCLQCQVSYCEQHLQPHYESPAFDKHKLVDPSKKLQEN-----------ICSWHNEV-MKIFCRTDQQC---ICYLCSMDEHKGHDIVVAEGERTERQKRLETSQQKIQ-----QRIQDRERDVKLLQQEVEAINHSADKAVMDSEKSFTELVYIVEKRSSDVKQLIRSQENIEVSRVKDLQEKLQQEITELRRK-DAELEQLSNTDDHIQFL 305
BLAST of mRNA_P-littoralis_Contig74.85.2 vs. uniprot
Match: UPI000F5DED6C (tripartite motif-containing protein 16-like n=1 Tax=Larimichthys crocea TaxID=215358 RepID=UPI000F5DED6C) HSP 1 Score: 58.5 bits (140), Expect = 3.010e-5 Identity = 69/301 (22.92%), Postives = 123/301 (40.86%), Query Frame = 2
Query: 302 CLHTICQNCAEDGLQRSENASSIKCPLCGLTTSDVITTSALQDNIMA---LQDLHR---------------KNSYCDFCDDDTVQASHVCDECESLLCTFHVKAHAVSRGTKSHTVASLTEKARKGAELGILHCVPITCARHAGVPAKLFC--SEPCGATICHNCSVTEHSGHTVYLADSEEVELLHRTGLTRRGVSLGHSLAKVQGALDAVEAVKTGVEQHSRMAEKSAV---QVFASIRAAVDSREKAVL------ENLQADRASKLQD-LNKQLNELTETIKAYAAALDTTNESLKYL 1114
C H+ C NC + + CP C T I L N M ++DL + ++ CDFC ++A C +C+ C H++ H S H + ++K ++ C+ H V K+FC + C IC+ CS+ EH GH + +A+ E E R +++ + ++Q V+ ++ VE + A+K+ + + F + V+ R V EN++ R LQ+ L +++ EL A L T++ +++L
Sbjct: 29 CGHSYCMNCIKSHWDEEDQKEIHSCPQCRQT---FIPRPVLVKNTMLADLVEDLKKTGLQAAPADQCYAGPEDVSCDFCTGRKLKAVKSCLQCQVSYCEQHLQPHYESPAFDKHKLVDPSKKLQEN-----------ICSWHNEV-MKIFCRTDQQC---ICYLCSMDEHKGHDIVVAEGERTERQKRLETSQQKIQ-----QRIQDRERDVKLLQQEVEAINHSADKAVMDSEKSFTELVYIVEKRSSDVKQLIRSQENIEVSRVKDLQEKLQQEITELRRK-DAELEQLSNTDDHIQFL 305 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig74.85.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig74.85.2 >prot_P-littoralis_Contig74.85.2 ID=prot_P-littoralis_Contig74.85.2|Name=mRNA_P-littoralis_Contig74.85.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=454bp MALQDLHRKNSYCDFCDDDTVQASHVCDECESLLCTFHVKAHAVSRGTKSback to top mRNA from alignment at P-littoralis_Contig74:378622..381489+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig74.85.2 ID=mRNA_P-littoralis_Contig74.85.2|Name=mRNA_P-littoralis_Contig74.85.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=2868bp|location=Sequence derived from alignment at P-littoralis_Contig74:378622..381489+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig74:378622..381489+ >mRNA_P-littoralis_Contig74.85.2 ID=mRNA_P-littoralis_Contig74.85.2|Name=mRNA_P-littoralis_Contig74.85.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1362bp|location=Sequence derived from alignment at P-littoralis_Contig74:378622..381489+ (Pylaiella littoralis U1_48)back to top |