mRNA_P-littoralis_Contig680.33.8 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig680.33.8
Unique NamemRNA_P-littoralis_Contig680.33.8
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig680.33.8 vs. uniprot
Match: D8LFD9_ECTSI (UBP-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFD9_ECTSI)

HSP 1 Score: 314 bits (805), Expect = 1.950e-94
Identity = 179/225 (79.56%), Postives = 198/225 (88.00%), Query Frame = 2 
Query:   17 DGSPPLYSEGAFDDHGDANSLKVAVVSREYEALVARQLQEQQSYFEDLIATAVAADAEANAPTEELLTEKERAEVAELRQAVDGLADKYEGILDSLRVDEETARRVRSENRGLVAEQRAQKQEEGRLADEARQTKRQCEQQMAELEGQMQDLLFFLKAQEEVKSSPRREELVGGSVVMGEGSGGAAGGK-GRAGGKETERERLVRRLKERSNSRRAGGRGTKPSR 688
            DGSPPLYSEG FDD G A+SLK+AVVSREYEALVARQLQEQQ YFEDLIATAVA DAEANAP EE+LT++ERAEV +LRQA+D L+ KYEGILDSLR DEETARRVRSENRGLV+EQR+QK+EEGRLA+EARQT+RQCEQQM+ELEGQMQDLLFFLK QE+VKSSPRR+E+VGGSVVM EG         GR G KETERERL RRLKERS+SRRAG  G KP+R
Sbjct:  786 DGSPPLYSEGGFDDQGGASSLKMAVVSREYEALVARQLQEQQRYFEDLIATAVAVDAEANAPVEEVLTDEERAEVGKLRQAIDELSGKYEGILDSLRTDEETARRVRSENRGLVSEQRSQKREEGRLAEEARQTRRQCEQQMSELEGQMQDLLFFLKTQEKVKSSPRRQEIVGGSVVMEEGXXXXXXXXXGRGGAKETERERLARRLKERSHSRRAGSGGAKPNR 1010
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BLAST of mRNA_P-littoralis_Contig680.33.8 vs. uniprot
Match: A0A835YX21_9STRA (UBP-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX21_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 8.070e-9
Identity = 53/158 (33.54%), Postives = 78/158 (49.37%), Query Frame = 2 
Query:   65 DANSLKVAVVSREYEALVARQLQEQQSYFEDLIATAVAADAEANAPTEELLTEKERAEVAELRQAVDGLADKYEGILDSLRVDEETARRVRSENRGLVAEQRAQKQEEGRLADEARQTKRQCEQQMAELEGQMQDLLFFLKAQEEVKSSPRREELVGG 538
            D    K+  V+REY+ L+A QL EQQ                                V++LR+ V  L ++ + +L  LR  +E  R + + N  L+ EQR  K E GRL  EA + +  CE  +A+LE Q+ DL F++KAQ +V+ S  R +L GG
Sbjct:  537 DGGRRKLWAVAREYDTLLATQLDEQQ--------------------------------VSQLREDVHTLEERRDALLSELRSAQEECRLLHAGNSTLMHEQREAKAEVGRLRAEAARERASCETMVADLEQQVSDLTFYIKAQAKVQQSKHRADLEGG 662
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BLAST of mRNA_P-littoralis_Contig680.33.8 vs. uniprot
Match: A0A7R9U8V5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8V5_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.770e-7
Identity = 48/162 (29.63%), Postives = 89/162 (54.94%), Query Frame = 2 
Query:   68 ANSLKVAVVSREYEALVARQLQEQQSYFEDLIATAVAADAEANAPTEELLTEKERAEVAELRQAVDGLADKYEGILDSLRVDEETARRVRSENRGLVAEQRAQKQEEGRLADEARQTKRQCEQQMAELEGQMQDLLFFLKAQEEVKSSPRREELVGGSVVMG 553
            A+  K+  V+  Y+ L+  QL+EQ+ Y+EDLIA     D  ANA      TE E  +++E+R +V       +  ++ +R   E    VR ENR L+  + + +    +      + ++  + ++ +L+ Q++DL F++KAQ +V + P R+E+  G+V++G
Sbjct:  384 ADRTKLNDVAHSYDKLMESQLEEQRRYYEDLIAAETLVDV-ANADW----TEGEAKDLSEMRDSVAQSQANLDLAMERVRAKTEEIEEVREENRRLLENEESLRNAVIQFQGRRTEVRQAIDVKLQDLQAQVEDLAFYVKAQMKVDADPNRDEVREGAVLVG 540
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig680.33.8 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LFD9_ECTSI1.950e-9479.56UBP-type domain-containing protein n=2 Tax=Ectocar... [more]
A0A835YX21_9STRA8.070e-933.54UBP-type domain-containing protein n=1 Tax=Tribone... [more]
A0A7R9U8V5_9STRA2.770e-729.63Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig680contigP-littoralis_Contig680:134085..137820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LFD9
PFAMsBRAP2,zf-RING_2,zf-UBP
Model size1269
Max annot lvl2759|Eukaryota
KEGG koko:K00413,ko:K10632,ko:K11407
KEGG Pathwayko00190,ko01100,ko02020,ko04014,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,ko05034,ko05165,ko05203,map00190,map01100,map02020,map04014,map04260,map04714,map04932,map05010,map05012,map05016,map05034,map05165,map05203
KEGG ModuleM00151,M00152
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000165,GO:0003674,GO:0003824,GO:0004842,GO:0005048,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005829,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0008139,GO:0008150,GO:0008152,GO:0008270,GO:0009636,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010646,GO:0010648,GO:0012505,GO:0016020,GO:0016310,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0023014,GO:0023051,GO:0023052,GO:0023057,GO:0031090,GO:0031965,GO:0031967,GO:0031975,GO:0032182,GO:0032446,GO:0032991,GO:0033218,GO:0035556,GO:0036211,GO:0042221,GO:0042277,GO:0042493,GO:0042802,GO:0043130,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045471,GO:0046677,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0097305,GO:0140096,GO:1901564,GO:1901700,GO:1902494,GO:1990234
Exons5
Evalue3.17e-23
EggNOG OGsKOG0804@1|root,KOG0804@2759|Eukaryota
EC2.3.2.27,3.5.1.98
Descriptionnuclear localization sequence binding
Cds size252
COG categoryGO
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03019,ko03036,ko04121,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig680.33.8prot_P-littoralis_Contig680.33.8Pylaiella littoralis U1_48polypeptideP-littoralis_Contig680 136613..137242 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791416.8573184-UTR-P-littoralis_Contig680:134084..1341271680791416.8573184-UTR-P-littoralis_Contig680:134084..134127Pylaiella littoralis U1_48UTRP-littoralis_Contig680 134085..134127 +
1680791416.869982-UTR-P-littoralis_Contig680:134315..1344161680791416.869982-UTR-P-littoralis_Contig680:134315..134416Pylaiella littoralis U1_48UTRP-littoralis_Contig680 134316..134416 +
1680791416.8831186-UTR-P-littoralis_Contig680:134953..1351251680791416.8831186-UTR-P-littoralis_Contig680:134953..135125Pylaiella littoralis U1_48UTRP-littoralis_Contig680 134954..135125 +
1680791416.8969386-UTR-P-littoralis_Contig680:136489..1366121680791416.8969386-UTR-P-littoralis_Contig680:136489..136612Pylaiella littoralis U1_48UTRP-littoralis_Contig680 136490..136612 +
1680791416.9338973-UTR-P-littoralis_Contig680:137242..1378201680791416.9338973-UTR-P-littoralis_Contig680:137242..137820Pylaiella littoralis U1_48UTRP-littoralis_Contig680 137243..137820 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791416.9080703-CDS-P-littoralis_Contig680:136612..1366721680791416.9080703-CDS-P-littoralis_Contig680:136612..136672Pylaiella littoralis U1_48CDSP-littoralis_Contig680 136613..136672 +
1680791416.9237573-CDS-P-littoralis_Contig680:137050..1372421680791416.9237573-CDS-P-littoralis_Contig680:137050..137242Pylaiella littoralis U1_48CDSP-littoralis_Contig680 137051..137242 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig680.33.8

>prot_P-littoralis_Contig680.33.8 ID=prot_P-littoralis_Contig680.33.8|Name=mRNA_P-littoralis_Contig680.33.8|organism=Pylaiella littoralis U1_48|type=polypeptide|length=84bp
MAELEGQMQDLLFFLKAQEEVKSSPRREELVGGSVVMGEGSGGAAGGKGR
AGGKETERERLVRRLKERSNSRRAGGRGTKPSR*
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mRNA from alignment at P-littoralis_Contig680:134085..137820+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig680.33.8 ID=mRNA_P-littoralis_Contig680.33.8|Name=mRNA_P-littoralis_Contig680.33.8|organism=Pylaiella littoralis U1_48|type=mRNA|length=3736bp|location=Sequence derived from alignment at P-littoralis_Contig680:134085..137820+ (Pylaiella littoralis U1_48)
GGGGGGGGTTGGCCTGGATGGCTCCCCGCCGTTATATTCTGAGGCGAGTG
CCGTCAGGCTACCTGCTGTACAGAGCCATGAAGTTTTTTCTCCCCCCGTA
AATACATGGTATATAGCTACGTAATTCCTTTGCGCGGCCGTGCCGTGCGC
CGTGGACGAGTTACACTGCTGTCATATTTTTTTTCACGTCGATCTTGATC
TGCTGTATGCGGTCGACGCGCTTGTCTCCAGGGAGCGTTCGACGATCACG
GAGATGCAAATTCTCTGAAGGTGGCGGTCGTTTCGAGAGAGTACGAGGCT
CTGGTGGCCAGGCAGCTGCAGGAGCAGCAAAGGTGACTCGAATCGAATGG
ATTATACCACCCCCCCCTCCTCAGTCCGGCACGTGTTTCACTCAGGATTT
CGTGTACCGCGGTAGGATTCAGACGTCAAACCGCCGCGCTGGCTGCTGTA
CTGTACTGCTTTACTGACAAGGTCCATGCCCTGTTGTGCCTCGTCATGTC
TGTCGTCATTTCGTGTGGATACGACACGGGCGGGGTCGGGGTTCAGACGT
GACCCGCCGCTCGCCGCTGTGCTGATGTTGTGCCGCACTTTTTTGTGCTC
TTCCTAGGTGCGCGCGACCCACCGTAGGCACGGCAGTGAAGGCCTGGTCG
CCACGGCCGTGCTACACGGAAAATTTGACTCAATACCACCACCGCCACTG
CTGTATCATGTTTTGTCGTGACTTGACTTCGTGTAGATATACGACATAGG
GTTGAGACGGGTCCCGCTGCCGCTGCGCTGCTGTCTTTGGTTTTGTGCCG
CTGTTTTCTTATTTTTTTCTGGGGCGGGGCGTTTTTCTTGCCGCATAACA
TATCATTATCGCACCACAGTTACTTCGAGGACCTCATTGCCACGGCTGTC
GCCGCCGATGCCGAGGCGAATGCTCCGACGGAGGAGTTGCTCACAGAGAA
GGAGCGAGCGGAAGTGGCGGAGCTCAGGCAGGCTGTGGACGGGCTGGCCG
ACAAGTACGAAGGCATTCTCGACAGCCTTCGGGTAGACGAGGTGCGTGAT
CCACTGCCGTGTAATAAACTGTACCGGCTTTCGTTCCGTGGAAAAATGAC
GGGATCGTCTTCACGGTGTTCCGTGAATAGCCTACGTAGACAGCTTCCGG
AAAGACAAGGTTGAGGTGGCGATATGGATTGTGTTTATTTGTGAAACGCA
TATCATACGCTATTTTGGTGGGGTCGAGCCGGAGCGATGAAGCCTCTCGA
CGGCCTTCGGGTCGACGAGGTACGTGGTGCGTGACATGTGGGTTTGCGTT
TTGCAAGGCGTCGAGGTCATCTGAGCCGGGTGTCGCGCCGGGGCGATGTA
GTCCGGACAGCCTTCAAGTAGGCGAGGAAAACGAGGAAAACGTTATTGGC
CGCATTCGGGGAAAAACAAGCTTGTCTTGGCTGTGTTATCGATTCGGAGT
CCGATGCGGTCTAGGTAGCCTTCGAGTAGGCAGTGCGTTTGGTGTTTTTA
TTTTGTGCTTCATGAAACGACGGAGTTGTCCGCACGGCGTCATCGACTCG
GAGCCCGAGGTAGTCTTGACAGCCTTCTAGCTGATGGGCACCCTTGTGTT
CGGCCGCGTTCATGAATCGACGAACTTATCCGAGCGTTGTTGTCGAGTGG
GAGCGATGGTGGTCTCTGCGTCTCGAGTGTTTGGTTTCTCCGCGTTGAAC
TCGGGGGGAGAGTTTGGATTGCTGTCCGAAGCGGATGGCATGATGGCAGG
ATCATGGTACTGTTAATGCTGCTGGTGGTTCAATGTCTGCCATACTTGTA
CACCGGTGTCAGCTATTTTGCTGTCAATCTTTCCTAGCTTTTCACCCCCG
TGGTAGCTTCACCGACACCCGCGCTGAAACCGTCATCGGCACCGGGAGCG
CAACGCCGGTAGACTGGTCTTCCCACCACACCATTGCCGTGCCCCGCTTT
TCGCGGCAATCCTGAACTTTACTCTCACACACATGCTGTAAACGCAATAT
TTTAGTCTCTTCCGAGAGCACTTCTCTTGCGTGATAGTGCCACGCATCCG
ACCTCCCTCCAATGCACGAGGAACCGCACGGGGTCGTTAAATCGCAAGGG
ACGGGCGACAGGGGACAGGGCACAGGCACCCATTCGTTCCATCATGTCGA
CGAATAGCACGGTACATATCTACCGCTTTCTTGTACGCGTGGGTGCGCCT
ACTGACTGTGGTTTTCTGCGGCTCATTCGTGTGGTACTTTAGCTCTCTTA
TCGCCGCGGTGGTGCTTTTTTGTTGTTGCTATGTTCGACTTACACGACTC
ACTCCACTCCACCACGCCACACTCACTTTGCTTTTATCTGCGGCTCGATA
CCACTCCACCACTTCCACCACTACACCACTCCACACCACACCACGCCAAA
ACCAGGAAACCGCACGAAGGGTCAGGTCGGAGAACCGGGGGTTGGTAGCG
GAGCAGCGTGCCCAGAAGCAAGAGGAGGGACGCTTGGCCGACGAGGCCAG
GCAGACGAAGCGGCAGTGCGAGCAACAGATGGCTGAGCTTGAAGGGCAGA
TGCAAGACTTGCTGTTTTTCTTGAAGGCTCAGGAAGAGGTTAGTTTTCGT
GGAGGTTTTGTTGTTGAGGTTGCTTATGTCAGGTGGGGGATGGAGCGGGA
TGGAGGACGGGGGCTTTTTCGCGGAGGCGTTGTTGTTGGCATTACGGGGG
GGTGGAGCAAGGGGCCTTTTTAAAGGAGGCGCTGTTGTTTGCATAATGAG
ACGCCTTGTTGCACATTCCCGACCCCGAACATCGAGCTTCCGCGCATGGA
CGTCAGCTTCTGTTTGTCCATTTTTTTTGTGCTGCAGCATTTTCCCTCGC
CCTGATATTTGTATTGCGGCCGCGGCAGGTTTCCTTAAACCTCGGCCTAG
CGGCCACTGCTGTAAATATTGTCAAACTTACTCATCAATAACGAAAGCAT
ACTTACGCTGGTACAGGTGAAGTCCAGCCCTCGGCGCGAGGAGCTGGTCG
GGGGCTCCGTGGTGATGGGGGAAGGTTCGGGGGGGGCAGCTGGCGGAAAA
GGGAGGGCAGGGGGCAAGGAGACCGAGCGGGAGAGACTAGTGCGTCGGCT
CAAGGAGCGGAGTAATTCGAGGAGGGCCGGGGGCAGGGGAACGAAGCCAA
GCCGTTGAAGCCAGTAGTAGCAATCAGTAGGTGTGACTTTATTGTATAAA
ACTTTTGCGTTTGAGACGGCCTGTTGCGTCAACATGACATTCAATATGAT
CGGGAGGAAGGGCAGGTTCCAACCGTTGAAACCGATACGTTAAGGGTTTC
GGAGGGGTGGCGGATGGTGACTACATCATCCCGAACCTGGAGAATAATAA
TGCTTTCGAAGCATTGAATTCGTAGACCATTTTCGCACGTTAGTATGTAG
GCGCAACGCTGAACCCAACGGTCAGGTGCAGAAGGTCTCGGAAAATTGGC
GGTGGCTGGTGCTTCGCATGTGAGGTGAAAAGGTCCTTAGGGCGCTCTCT
GCGCGCCAAACGTACGCCGGTCGGATTCGGCTTTGTTAAATCGTCGTGCT
CAACGCATAAACGTGCAATTTTGTAGTGAAACTGGCGGCCACCAAAAACA
ATCGCAGGGCGGGTTTTTGTATCCAAACATACTTCGAAATATGATGCAAC
GTATGATGCTATCATACGATACCTCTGCGCTCAATTTCACTCGTTAGGGC
TCTTCGCGTGTAAGGTACTGTATGCGCACTATGTAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig680:134085..137820+

>mRNA_P-littoralis_Contig680.33.8 ID=mRNA_P-littoralis_Contig680.33.8|Name=mRNA_P-littoralis_Contig680.33.8|organism=Pylaiella littoralis U1_48|type=CDS|length=252bp|location=Sequence derived from alignment at P-littoralis_Contig680:134085..137820+ (Pylaiella littoralis U1_48)
ATGGCTGAGCTTGAAGGGCAGATGCAAGACTTGCTGTTTTTCTTGAAGGC
TCAGGAAGAGGTGAAGTCCAGCCCTCGGCGCGAGGAGCTGGTCGGGGGCT
CCGTGGTGATGGGGGAAGGTTCGGGGGGGGCAGCTGGCGGAAAAGGGAGG
GCAGGGGGCAAGGAGACCGAGCGGGAGAGACTAGTGCGTCGGCTCAAGGA
GCGGAGTAATTCGAGGAGGGCCGGGGGCAGGGGAACGAAGCCAAGCCGTT
GA
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