mRNA_P-littoralis_Contig66.220.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig66.220.1
Unique NamemRNA_P-littoralis_Contig66.220.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig66.220.1 vs. uniprot
Match: D7FZ90_ECTSI (Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ90_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 8.080e-13
Identity = 38/68 (55.88%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    1 RGRREAEPRQTLEKKFDVAELERNVKE-------------SSRWQEEGSDYLGKRVKRVFGRRVAGAT 165
            RG+REA+ +Q L+++FD+++LERN K+             S  W+EEGS+YLGKRVKRVFGRRVAGAT
Sbjct: 1333 RGKREADLKQALQERFDMSDLERNAKDRAMSMSDAAQSGGSMTWREEGSEYLGKRVKRVFGRRVAGAT 1400
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BLAST of mRNA_P-littoralis_Contig66.220.1 vs. uniprot
Match: A0A6H5KZ49_9PHAE (WSD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ49_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.060e-12
Identity = 37/68 (54.41%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    1 RGRREAEPRQTLEKKFDVAELERNVKE-------------SSRWQEEGSDYLGKRVKRVFGRRVAGAT 165
            RG+REA+ +Q L+++FD+++LER+ K+             S  W+EEGS+YLGKRVKRVFGRRVAGAT
Sbjct:  591 RGKREADLKQALQERFDISDLERDAKDRAISMSDAAKSGGSMSWREEGSEYLGKRVKRVFGRRVAGAT 658
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig66.220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZ90_ECTSI8.080e-1355.88Chain A, 4ank: A Designed Ankyrin Repeat Protein W... [more]
A0A6H5KZ49_9PHAE2.060e-1254.41WSD domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig66contigP-littoralis_Contig66:681500..681898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FZ90
PFAMsAnk_2,Ank_5,Helo_like_N,Macro,PARP,PNP_UDP_1,WWE
Model size166
Max annot lvl2759|Eukaryota
KEGG koko:K15261
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue1.32e-13
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
EC2.4.2.30
Descriptionspectrin binding
Cds size165
COG categoryI
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791380.3838336-CDS-P-littoralis_Contig66:681499..6815821680791380.3838336-CDS-P-littoralis_Contig66:681499..681582Pylaiella littoralis U1_48CDSP-littoralis_Contig66 681500..681582 +
1680791380.3966222-CDS-P-littoralis_Contig66:681816..6818981680791380.3966222-CDS-P-littoralis_Contig66:681816..681898Pylaiella littoralis U1_48CDSP-littoralis_Contig66 681817..681898 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig66.220.1prot_P-littoralis_Contig66.220.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig66 681500..681898 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig66.220.1

>prot_P-littoralis_Contig66.220.1 ID=prot_P-littoralis_Contig66.220.1|Name=mRNA_P-littoralis_Contig66.220.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=55bp
RGRREAEPRQTLEKKFDVAELERNVKESSRWQEEGSDYLGKRVKRVFGRR
VAGAT
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mRNA from alignment at P-littoralis_Contig66:681500..681898+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig66.220.1 ID=mRNA_P-littoralis_Contig66.220.1|Name=mRNA_P-littoralis_Contig66.220.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=399bp|location=Sequence derived from alignment at P-littoralis_Contig66:681500..681898+ (Pylaiella littoralis U1_48)
AGGGGCAGGCGGGAGGCGGAGCCGCGGCAAACTTTGGAGAAGAAGTTCGA
CGTCGCCGAGCTAGAGCGAAACGTCAAGGAAAGGTACGTAAAAGAACGGA
AGGGGATGGTGTTTGCGTCTCGACATCAAGAAGAAGAAAAATAAAACGCT
CCGGCATCAACATTCTAACGATAATGCCTTCCGAATTCTATTCAATACAG
TAGTAAACAACGGTCGATCTAGAAGACTCCGTATTGATAAATATTACCTG
CACTTGAAAACACTTAAAAAGAAATCTCGCCAAAAATAAGGGAATCTGCT
GTGCCCCCCGACACTAGCTCGAGGTGGCAAGAGGAGGGCTCTGACTATCT
TGGCAAGCGCGTGAAGCGAGTCTTCGGGAGGAGGGTCGCCGGAGCGACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig66:681500..681898+

>mRNA_P-littoralis_Contig66.220.1 ID=mRNA_P-littoralis_Contig66.220.1|Name=mRNA_P-littoralis_Contig66.220.1|organism=Pylaiella littoralis U1_48|type=CDS|length=165bp|location=Sequence derived from alignment at P-littoralis_Contig66:681500..681898+ (Pylaiella littoralis U1_48)
AGGGGCAGGCGGGAGGCGGAGCCGCGGCAAACTTTGGAGAAGAAGTTCGA
CGTCGCCGAGCTAGAGCGAAACGTCAAGGAAAGCTCGAGGTGGCAAGAGG
AGGGCTCTGACTATCTTGGCAAGCGCGTGAAGCGAGTCTTCGGGAGGAGG
GTCGCCGGAGCGACG
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