mRNA_P-littoralis_Contig66.163.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig66.163.1
Unique NamemRNA_P-littoralis_Contig66.163.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig66.163.1 vs. uniprot
Match: D7FHF5_ECTSI (Nup54 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHF5_ECTSI)

HSP 1 Score: 405 bits (1042), Expect = 7.000e-141
Identity = 211/240 (87.92%), Postives = 224/240 (93.33%), Query Frame = 1
Query:   13 PAAANAGSASQKEFEKLFEAYAAKNPANGEPNHNCRMKHVVYNQVDPSLRNSYTRPAYMDDKTWKKAK-DNPDPSKLAPVALIGWENLKERLVGQQKEMQKMAEFVALMQNQTSTGLRSVALVRTQMEASRRRHLAQAHRFLKLQRKLDAVRCLNKPLSDPERHLRMRLEGVHRSLGPPQQTLKDLNSTLLQGERQAEEVEEISDPEELRRIFHALEGQRDGLEHLMRIVKKDKQDLEVI 729
            P AANAGSASQKEFEKLFEAYAAKNPANGEPN +CRMKHVVYNQVDPSLRNSYTRP +MDDKTW+KA+ DNPDPSKLAP A+IGWE+LKERLVGQQ+EM+KMAEFVALMQN T  GLRSVALVRTQMEASRRRHLAQAHRFLKLQRKLDAVRCLNKPLSD ER LR RLEGVHRSLGPPQQTLKDLNS LLQGER  EEVEEI+DPEELRRIF ALEGQR+GL HLMRIVKKD+QDLE++
Sbjct:   54 PPAANAGSASQKEFEKLFEAYAAKNPANGEPNPSCRMKHVVYNQVDPSLRNSYTRPPHMDDKTWQKAEEDNPDPSKLAPAAVIGWESLKERLVGQQQEMKKMAEFVALMQNTTRGGLRSVALVRTQMEASRRRHLAQAHRFLKLQRKLDAVRCLNKPLSDDERQLRTRLEGVHRSLGPPQQTLKDLNSALLQGERHMEEVEEITDPEELRRIFQALEGQREGLTHLMRIVKKDRQDLEIM 293          
BLAST of mRNA_P-littoralis_Contig66.163.1 vs. uniprot
Match: A0A024TY86_9STRA (Nup54 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TY86_9STRA)

HSP 1 Score: 114 bits (286), Expect = 7.250e-26
Identity = 72/214 (33.64%), Postives = 118/214 (55.14%), Query Frame = 1
Query:  118 RMKHVVYNQVDPSLRNSYTRPAYMDDKTWKKA-KDNPDPSKLAPVALIGWENLKERLVGQQKEMQKMAEFVALMQNQTSTGLRSVALVRTQMEASRRRHLAQAHRFLKLQRKLDAVRCLNKPLSDPERHLRMRLEGVHRSLGPPQQ---------TLKDLNSTLLQGERQAEEVEEISDPEELRRIFHALEGQRDGLEHLMRIVKKDKQDLEVI 729
            R KH+ YN VDPS ++ Y+RP ++ +K W +A +DNPDP+ L P A++G++ L  R+  QQ  ++K   +   +  Q     ++      ++   R++H+A  HR ++L RKL+  + L KPL   E HL   L+ V   L  P Q         TL+ L + L   +R    + E    E+L  +F  L+ QR+GLEHL RI+ +D +D++++
Sbjct:  256 RFKHMFYNAVDPSQKHLYSRPPHVGEKLWIQAQRDNPDPANLVPAAVVGFKELSTRIQLQQAHIKKFHGYAKDLVVQVQEMEKASRNTDVKLTQCRQQHIALFHRLVQLMRKLELFKQLRKPLHANEHHLAATLKHVQSLLDNPTQFKAHMHELMTLQSLQAALPTQQRPDAPLTE----EDLATVFRVLDKQREGLEHLTRILNQDMRDVQIM 465          
BLAST of mRNA_P-littoralis_Contig66.163.1 vs. uniprot
Match: W4G2Y8_9STRA (Nup54 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G2Y8_9STRA)

HSP 1 Score: 112 bits (280), Expect = 4.210e-25
Identity = 68/214 (31.78%), Postives = 119/214 (55.61%), Query Frame = 1
Query:  118 RMKHVVYNQVDPSLRNSYTRPAYMDDKTWKKA-KDNPDPSKLAPVALIGWENLKERLVGQQKEMQKMAEFVALMQNQTSTGLRSVALVRTQMEASRRRHLAQAHRFLKLQRKLDAVRCLNKPLSDPERHLRMRLEGVHRSLGPPQQ---------TLKDLNSTLLQGERQAEEVEEISDPEELRRIFHALEGQRDGLEHLMRIVKKDKQDLEVI 729
            R K++ YN VDP+ ++ YTRP ++ +K W +A +DNPDP+ L P A++G++ L  R+  QQ  ++K   +   +  Q     ++      ++   R++H+A  HR ++L RKL+  + L KPL   E HL   L+ V   L  P Q         TL+ + + L   +R   ++ +    E++  +F  L+ QR+GLEHL RI+ +D +D++++
Sbjct:  237 RFKYMFYNAVDPAQKHLYTRPPHVGEKLWIQAQRDNPDPANLVPAAVVGFKELSTRIQLQQAHIKKFHGYAKDLVAQVQDMEKASRHTDVKLTQCRQQHIALFHRLVQLMRKLELFKQLRKPLHPSEHHLAATLKHVQSLLDNPTQFKAHMHELMTLQSMQAALPNQQRPDAQLTD----EDMATVFRVLDKQREGLEHLTRILNQDLRDVQIM 446          
BLAST of mRNA_P-littoralis_Contig66.163.1 vs. uniprot
Match: A0A6G0XI91_9STRA (Nup54 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XI91_9STRA)

HSP 1 Score: 112 bits (280), Expect = 5.240e-25
Identity = 68/209 (32.54%), Postives = 114/209 (54.55%), Query Frame = 1
Query:  118 RMKHVVYNQVDPSLRNSYTRPAYMDDKTWKKA-KDNPDPSKLAPVALIGWENLKERLVGQQKEMQKMAEFVALMQNQTSTGLRSVALVRTQMEASRRRHLAQAHRFLKLQRKLDAVRCLNKPLSDPERHLRMRLEGVHRSLGPPQQTLKDLNSTL----LQGERQAEEVEEISDPEELRRIFHALEGQRDGLEHLMRIVKKDKQDLEVI 729
            R KH+ YN VDPSL++ YTRP ++ +K W +A +DNPDP+   P A++G++ L  R+  QQ+E QK   +   +  Q      S      ++   R++H+A  HR ++L RKL+  + L KPL   E  L   L+ +   L  P Q    ++  +    LQ  +     +     E++  +F  L+ QR+GLEHL +I+ +D +D++++
Sbjct:  251 RFKHMFYNAVDPSLKHLYTRPPHIGEKLWIQAQRDNPDPTNCVPAAVLGFKELSTRIKLQQEEAQKFHGYAKDLVKQVEEMKVSSRHTDVKLAQCRQQHVALCHRLVQLMRKLEVFKQLRKPLHVDELRLAAMLKQIQSMLDNPTQFKAHMHELITLQALQEAKPHHRPDAQLTEEDMATVFRLLDKQREGLEHLTKILNQDIRDVQIM 459          
BLAST of mRNA_P-littoralis_Contig66.163.1 vs. uniprot
Match: A0A485LQI1_9STRA (Aste57867_23878 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LQI1_9STRA)

HSP 1 Score: 112 bits (279), Expect = 7.550e-25
Identity = 66/211 (31.28%), Postives = 121/211 (57.35%), Query Frame = 1
Query:  118 RMKHVVYNQVDPSLRNSYTRPAYMDDKTWKKA-KDNPDPSKLAPVALIGWENLKERLVGQQKEMQKMAEFVALMQNQTSTGLRSVALVRTQMEASRRRHLAQAHRFLKLQRKLDAVRCLNKPLSDPERHLRMRLEGVHRSLGPPQQTLKDLNSTL-LQGERQAEEVEEISDPEELRR-----IFHALEGQRDGLEHLMRIVKKDKQDLEVI 729
            R KH+ YN VDP+ ++ YTRP ++ +K W +A +DNPDP+   P A++G++ L  R+  QQ+  QK   +   +  Q     ++      ++   R++H+A  HR ++L RKL+  + L KPL+  E  L M L+ +   L  P Q    ++  + LQ  ++A + ++ ++ ++L       +F  L+ QR+GLEHL +I+ +D +D++++
Sbjct:  269 RFKHMFYNAVDPAHKHLYTRPPHVGEKLWIQAQRDNPDPTNCVPAAVLGFKELATRIKLQQEHTQKFNGYAVDLVKQVQEMEKASRQTDVKLAHCRQQHIALFHRLVQLMRKLEVFKQLRKPLAADEHRLAMTLKHIQGLLDNPTQFKAHMHELMTLQSMQEAVQSQQRAENQQLTEDDMVTVFRLLDKQREGLEHLTKILNQDLRDVQIM 479          
BLAST of mRNA_P-littoralis_Contig66.163.1 vs. uniprot
Match: A0A067CQG4_SAPPC (Nup54 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CQG4_SAPPC)

HSP 1 Score: 109 bits (273), Expect = 4.780e-24
Identity = 68/211 (32.23%), Postives = 116/211 (54.98%), Query Frame = 1
Query:  118 RMKHVVYNQVDPSLRNSYTRPAYMDDKTWKKA-KDNPDPSKLAPVALIGWENLKERLVGQQKEMQKMAEFVALMQNQTSTGLRSVALVRTQMEASRRRHLAQAHRFLKLQRKLDAVRCLNKPLSDPERHLRMRLEGVHRSLGPPQQTLKDLNSTLLQGERQA------EEVEEISDPEELRRIFHALEGQRDGLEHLMRIVKKDKQDLEVI 729
            R KH++YN VDP+ ++ Y RPA++ +K W +A +DNPDP+   P A+IG++ L  R+  QQ+   K A +   M  Q     ++      ++   R +H+A  HR ++L RKL+  + L KPL   E  L   L+ V   L  P Q    +N  +     QA      +E  ++S+ ++L  +F  ++ QR GLEH+ +++ +D +D+E++
Sbjct:  260 RFKHMLYNAVDPAQKHLYVRPAHISEKLWTQAQRDNPDPANCVPAAVIGFKELSTRIKLQQEHADKFATYAEDMVTQVKEMEKTSRETDVKLAQCRHQHVALFHRLIQLMRKLEVFKNLRKPLHADEVKLLETLKKVASMLDNPTQFKARMNELMALQAMQAAKPHPDQEQCQLSE-QDLHLVFGIMDRQRQGLEHVTKVLSQDMRDVEIM 469          
BLAST of mRNA_P-littoralis_Contig66.163.1 vs. uniprot
Match: A0A1V9ZK41_9STRA (Carbohydrate-binding protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZK41_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.250e-23
Identity = 70/211 (33.18%), Postives = 116/211 (54.98%), Query Frame = 1
Query:  118 RMKHVVYNQVDPSLRNSYTRPAYMDDKTWKKA-KDNPDPSKLAPVALIGWENLKERLVGQQKEMQKMAEFVALMQNQTSTGLRSVALVRTQMEASRRRHLAQAHRFLKLQRKLDAVRCLNKPLSDPERHLRMRLEGVHRSLGPPQQTLKDLNSTL-LQG---ERQAEEVEE--ISDPEELRRIFHALEGQRDGLEHLMRIVKKDKQDLEVI 729
            R KH+ YN VDP+ ++ Y RPA++ +K W +A +DNPDP+   P  +IG++ L  R+  QQ+   K A +   M  Q     +S      ++   R +H+A  HR +KL RKL+  + L KPL   E  L   L+ +   L  P Q    +N  + LQ    ++  +E +E  +SD  +L+ +F  +  QR GLEH+ +++ +D +D+E++
Sbjct:  418 RFKHMFYNAVDPAQKHLYVRPAHISEKLWTQAQRDNPDPANCVPAPVIGFKELSTRIKLQQEHADKFATYADDMVTQVKEMEKSSRETDVKLAQCRHQHVALFHRLIKLMRKLEVFKNLRKPLHQDEVRLFATLKKIASLLDNPTQFKARMNELMALQAMLKDKPMDEADEGKLSD-HDLQLVFGIMNRQRQGLEHVTKVLTQDLRDVEIM 627          
BLAST of mRNA_P-littoralis_Contig66.163.1 vs. uniprot
Match: UPI000A2A8828 (nucleoporin p54 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A8828)

HSP 1 Score: 88.6 bits (218), Expect = 1.630e-16
Identity = 63/195 (32.31%), Postives = 101/195 (51.79%), Query Frame = 1
Query:  172 TRPAYMDDKTWKKAK-DNPDPSKLAPVALIGWENLKERLVGQQKEMQKMAEFVALMQNQTSTGLRSVALVRTQMEASRRRHLAQAHRFLKLQRKLDAVRCLNKPLSDPERHLRMRLEGVHRSLGPPQQTLKDLNSTLLQGERQAE--------EVEEISDPEELRRIFHALEGQRDGLEHLMRIVKKDKQDLEVI 729
            T PA +D   W++AK DNPDP KL PV + G+ENLK+RL  +++E  +  + ++++  + +T   + A    ++   +R+HL  +HR L++  K +++R     +   E  LR+ LE +   L  P Q    LN  L Q   Q          E     DP     +   LE Q++GL HL+ I+K D +DL+ I
Sbjct:  321 TPPAGIDALLWEQAKKDNPDPQKLIPVPMTGFENLKKRLEFEEQETTQHQKRLSIISEEIATLQGNHATTMAKLAQFKRKHLELSHRVLEVMVKQESIRKAGYSVQAEEEQLRVHLESLQAELNAPLQFKARLNELLSQIRLQQSQXVGSDRTEGRYSMDPSLQNELKQHLEQQQEGLMHLISIIKDDLEDLKTI 515          
BLAST of mRNA_P-littoralis_Contig66.163.1 vs. uniprot
Match: A0A7S2UV49_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV49_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 7.460e-16
Identity = 53/179 (29.61%), Postives = 95/179 (53.07%), Query Frame = 1
Query:  196 KTWKKA-KDNPDPSKLAPVALIGWENLKERLVGQQKEMQKMAEFVALMQNQTSTGLRSVALVRTQMEASRRRHLAQAHRFLKLQRKLDAVRCLNKPLSDPERHLRMRLEGVHRSLGPPQQTLKDLNSTLLQGERQAEEVEEISDPEELRRIFHALEGQRDGLEHLMRIVKKDKQDLEVI 729
            + W +A + NPDP  LAP  ++G   L  R+  Q +    +  +V  +++   +  ++     + ME SR RH   A++FL++  K++ +RC    ++  E  LR RLE + ++L  P   LK L         QA         ++L+ I +AL+ Q+ GLEHL+ ++KKD +D++++
Sbjct:    3 QAWDRAERANPDPESLAPTPIVGQAALLGRIQHQTQHTADLQSYVKRLRDTVHSLQQTAHRTESAMEKSRLRHRRLANKFLQVLLKVEVLRCQGLGVAPEEHQLRARLEQLAKALQDPHSRLKHLLQLAPHTATQAPGKPAHMGEDDLKAIHNALQNQKQGLEHLINVLKKDVRDVQLM 181          
BLAST of mRNA_P-littoralis_Contig66.163.1 vs. uniprot
Match: UPI001EAFAFE2 (nucleoporin p54-like isoform X2 n=6 Tax=Haliotis TaxID=6452 RepID=UPI001EAFAFE2)

HSP 1 Score: 82.8 bits (203), Expect = 1.680e-14
Identity = 60/191 (31.41%), Postives = 99/191 (51.83%), Query Frame = 1
Query:  178 PAYMDDKTWKKAK-DNPDPSKLAPVALIGWENLKERLVGQQKEMQKMAEFVALMQNQTSTGLRSVALVRTQMEASRRRHLAQAHRFLKLQRKLDAVRCLNKPLSDPERHLRMRLEGVHRSLGPPQQTLKDLNSTLLQ------GERQAEEVEEISDPEELRRIFHALEGQRDGLEHLMRIVKKDKQDLEVI 729
            PA +D   W++AK DNPDP++L PV +IG++ ++ RL  QQ++ +   + + +M    +      + +  + E  +R+HL   HR L++  K +  R +   +   E HL+++LE +   L  P Q    LN  + Q         Q +EV    D E    I   L+ Q+DGL HL++I+K D  DL +I
Sbjct:  392 PAGIDPVLWQQAKLDNPDPTRLIPVPMIGFKEVQRRLQHQQEQTRLHQQRLDVMSGDLTDLQNKHSNMLARQEEYKRKHLELGHRLLQVIVKQEIYRKMGYAIQAEEEHLKVQLEVLQTELNHPTQFKGRLNELMSQIRMQNHVSSQRQEVSFQMDTELQSEIKQLLKQQQDGLNHLIQILKDDASDLHLI 582          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig66.163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHF5_ECTSI7.000e-14187.92Nup54 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A024TY86_9STRA7.250e-2633.64Nup54 domain-containing protein n=2 Tax=Aphanomyce... [more]
W4G2Y8_9STRA4.210e-2531.78Nup54 domain-containing protein n=1 Tax=Aphanomyce... [more]
A0A6G0XI91_9STRA5.240e-2532.54Nup54 domain-containing protein n=1 Tax=Aphanomyce... [more]
A0A485LQI1_9STRA7.550e-2531.28Aste57867_23878 protein n=1 Tax=Aphanomyces stella... [more]
A0A067CQG4_SAPPC4.780e-2432.23Nup54 domain-containing protein n=2 Tax=Saprolegni... [more]
A0A1V9ZK41_9STRA2.250e-2333.18Carbohydrate-binding protein n=1 Tax=Thraustotheca... [more]
UPI000A2A88281.630e-1632.31nucleoporin p54 n=1 Tax=Exaiptasia diaphana TaxID=... [more]
A0A7S2UV49_9STRA7.460e-1629.61Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
UPI001EAFAFE21.680e-1431.41nucleoporin p54-like isoform X2 n=6 Tax=Haliotis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig66contigP-littoralis_Contig66:582471..586101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FHF5
Preferred nameNUP57
PFAMsNucleoporin_FG,Nup54
Model size729
Max annot lvl2759|Eukaryota
KEGG koko:K14308
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005730,GO:0005737,GO:0006403,GO:0006405,GO:0006407,GO:0006606,GO:0006607,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0006997,GO:0006999,GO:0008104,GO:0008150,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0017056,GO:0022613,GO:0031224,GO:0031503,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0036228,GO:0042254,GO:0042886,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044446,GO:0044464,GO:0044613,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0051029,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072657,GO:0090435,GO:0097064
Exons7
Evalue1.15e-141
EggNOG OGsKOG3091@1|root,KOG3091@2759|Eukaryota
Ec32 ortholog descriptionNucleoporin Nup54, alpha-helical domain
Ec32 orthologEc-25_002590.1
Descriptionprotein localization to nuclear inner membrane
Cds size729
COG categoryS
BRITEko00000,ko00001,ko00002,ko03019
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig66.163.1prot_P-littoralis_Contig66.163.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig66 582471..586101 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791379.2477524-CDS-P-littoralis_Contig66:582470..5825961680791379.2477524-CDS-P-littoralis_Contig66:582470..582596Pylaiella littoralis U1_48CDSP-littoralis_Contig66 582471..582596 +
1680791379.2691019-CDS-P-littoralis_Contig66:583153..5832411680791379.2691019-CDS-P-littoralis_Contig66:583153..583241Pylaiella littoralis U1_48CDSP-littoralis_Contig66 583154..583241 +
1680791379.2782984-CDS-P-littoralis_Contig66:583623..5837391680791379.2782984-CDS-P-littoralis_Contig66:583623..583739Pylaiella littoralis U1_48CDSP-littoralis_Contig66 583624..583739 +
1680791379.2878132-CDS-P-littoralis_Contig66:584244..5843521680791379.2878132-CDS-P-littoralis_Contig66:584244..584352Pylaiella littoralis U1_48CDSP-littoralis_Contig66 584245..584352 +
1680791379.3009083-CDS-P-littoralis_Contig66:584849..5849961680791379.3009083-CDS-P-littoralis_Contig66:584849..584996Pylaiella littoralis U1_48CDSP-littoralis_Contig66 584850..584996 +
1680791379.3118258-CDS-P-littoralis_Contig66:585443..5855091680791379.3118258-CDS-P-littoralis_Contig66:585443..585509Pylaiella littoralis U1_48CDSP-littoralis_Contig66 585444..585509 +
1680791379.3239477-CDS-P-littoralis_Contig66:586023..5861011680791379.3239477-CDS-P-littoralis_Contig66:586023..586101Pylaiella littoralis U1_48CDSP-littoralis_Contig66 586024..586101 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig66.163.1

>prot_P-littoralis_Contig66.163.1 ID=prot_P-littoralis_Contig66.163.1|Name=mRNA_P-littoralis_Contig66.163.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=243bp
VVAAPAAANAGSASQKEFEKLFEAYAAKNPANGEPNHNCRMKHVVYNQVD
PSLRNSYTRPAYMDDKTWKKAKDNPDPSKLAPVALIGWENLKERLVGQQK
EMQKMAEFVALMQNQTSTGLRSVALVRTQMEASRRRHLAQAHRFLKLQRK
LDAVRCLNKPLSDPERHLRMRLEGVHRSLGPPQQTLKDLNSTLLQGERQA
EEVEEISDPEELRRIFHALEGQRDGLEHLMRIVKKDKQDLEVI
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mRNA from alignment at P-littoralis_Contig66:582471..586101+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig66.163.1 ID=mRNA_P-littoralis_Contig66.163.1|Name=mRNA_P-littoralis_Contig66.163.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3631bp|location=Sequence derived from alignment at P-littoralis_Contig66:582471..586101+ (Pylaiella littoralis U1_48)
GTCGTAGCCGCACCCGCAGCGGCGAATGCGGGCTCGGCCTCACAGAAAGA ATTCGAAAAACTGTTTGAGGCTTACGCGGCGAAGAACCCCGCCAACGGCG AGCCCAACCACAACTGTAGGATGAAGGTATGTCATTGTCACTATTGACAT GTGAGGGCTGGCCTTGCCTTGATCTTCTCCGCCGGTTTACTGCTCTCGAA GCTGCTACCCCGTGCCCCGACGCACGGTTCAGAACGTCGCGTGAGTCATC ATCGTGCTGATGGAACGATACGTGTGCCAGACATGTACAGCATGCTGTCT TGAGGAGGGTATTGCCTGTTCCGGTCACCAAATAGCCGTGTCTCATCATT TCCGGTGCTTGTCGTCCTACTCTTTTGGTTCAACCTAACAGCAAGCTTCG CGTCAAGGGTGTGGCAATGGCAGGATAGCAGACTTGGGCAGTTTGGCGTG CCATCACTATGATACAATATGTTTCGTTGGCGCCATGCGTCCGACATATA TTGAGGTTGTCGGGAACTTATCTACACCAGAATTGCGCCTCCATTCCAGC AAGATACATGGACTAAATGCAGATGGCTGGAGGATTGTCTCTCTTTGTGC GTGTGTTGTCATGCCTCCTCTCATTGACCACTCTCGGGCCGATCGTCTCA AGCGCGCGTGGAAATCCCCTCGTTTTCTCGCAGCACGTGGTTTACAACCA GGTGGACCCCAGCCTTCGGAACTCGTACACCCGCCCGGCATACATGGACG ACAAGACATGGAAGAAGGCAAGTGACATGAAGAGCCTGGCCCAAGATTCT CCTCGGTGTTGTTTGGATCTGTACCGTATGGCTGTACTTGATTTTGGATA GCGCACCGCCTAGGACTTGTTTCGGGGCTGGTTTGGTCGTAAACAGCTGA GAGTGTGTGGTCTCACTACCATTGTTTCCACATGAGAGGAGGGGAGGCGT GTCGCGAGCAGGCCTGTCGGCACTCCCGAGACCCGTGCGGGTGGCAAAGC TGGCCGCCAGAGGGTGGTATTTCGTTTTGTGCAAGCGGGGCGTGGGGAAA TAGAATATCTACCATGACTCCAGGGCCGGGCACTCCTGGGTGTCACTTTT CTTAGGTCACAGGTGCTTGTGTCTTGTCTCGTGCTTTTCTCCGAAGGCGG AAGAAGACAATCCTGATCCAAGCAAGCTCGCCCCGGTAGCATTGATTGGG TGGGAGAATCTCAAGGAGCGGCTGGTCGGACAACAGAAGGAAATGCAAAA GATGGCGGAGTTTGTCGCGGTGAGCACCCCGACACGCTTCACTGACAAAG CACGCCTTCGCTCGGCGCGGCGATGGGCGAGTTGCAAGATGGTGGTGTTG ATGAATCCGTTGATTCGCTACAGGCCGACATCGCTGATGATGGTTGAGTG CACGAGAATCGACCCAATCTTGTGTTTTGCCAAGAAGTAAACCCTTCTAG TTTTCGCGGTATCGTCTCATCCTGTTTCCCCCTCGCACAAGCCTCACTGC TAAACCCCTGTTTATCTATCTCACCCAACCGCTTTGGAGGCGGGGTATTT ATTTTGAAATACTCCGATACTCTCAGTGATTGCTTTGAATACCAGCTCCG AAGGGAGTCAAGTTCGAGCAAACCCGGGCAAACTCTGCACCTCAGTGCTT TCTGCGGTTCGCCTTGAAGTGAAGTACTTTCATATTTTGCCGGGGGCTTC GAAACATGTGTTTGTTGAAGCGTCTGTTTACAATGCATACCTGGTACTTA TTTTTCGATTTCGTTGCACGGCAGCTGATGCAAAATCAGACAAGTACAGG CCTTCGCTCGGTGGCCTTGGTGAGGACACAGATGGAGGCATCGCGGCGCA GGCATCTCGCGCAAGCGCATCGCTTCCTGAAGGTGACGTTCTTCAAGATT ACCGAGTATTCGATGGTTGTGTGGTAATATTCTTTGTGTGGCCTTCAACC CCTGTATGACACAAAAATGTGACCGACGTCTTCGGCGGGACGTCCTGTCA GTTTCCTAACTGTTGATGAAAAACGGGGATTTTTCCACGCGTCTCTGCGC TCTGCTGATTTACTTTGACATTCTGGGCGTGCTTCTCGTGGTGTCGCCGG CAACAGGCTCACATCATTGGTTCACTGGTTGTCCCAGCCTCTGACAACGC TACTGTGGTCTTCGTTTGGGGCGCGTTGACCTATGGCATACCTAGAAATA CCAGGCGGACCCGCTCCGTTGCGGGTGACACGAAATCCCCGCAAAACTTA AGCGTGATTGCGAATGATTTTCCCTGAGGATGAAGCCTTTGGATCCTGGC TATCCTCGTGCCACCACTTCTGTCATCCAATATGTAACACAATGTTCTGT GTATGTATCGCTTGGCATCCCGTAAACAGCTTCAGCGCAAGCTGGATGCG GTCCGATGTTTGAACAAACCCCTGAGCGACCCCGAGCGGCATCTGAGGAT GAGGCTGGAGGGTGTTCACCGATCCCTTGGCCCCCCGCAGCAGACGCTCA AGGACCTCAATTCCACCCTTCTTCAGGTAGAAAACGTCTCCACCGTTCTT GTTTGGGGACTGAGTCTTGTGTTAGTTTTTGTTTGCTTCTCGTTGGCGAT ATTTACAAATCGGTGCCATTTGATGGCGATTGCAAACATTCCGAGCCTGG AACTGTCCTGCTTACCCTAAAAATCCGCCGTATCATTCGTACCGTCACCT ACTGTTCGCTCGATTCGTGTCACCTAATTGGCGCTTGAACTGGTGCAAAC GTTGATGCACCCCGCAAAATATTAATGGCGCCCTTTGCGCGGTGGTGGCC TTGAAGTAGCGAAAACGTGTTCGCAAGTGACGCTGCACATCCCGGGGCCA ACTTGAGCACCATCGACGTTGAACCTCCCTTCTCTACCTGGCCGTGCCCG TACTCTATCGTTCGCTTGCACGTGATGGATTATCTCTCATCCACGGGGGT GGGGTCGAAACTCGGGTCCATAGGGGGAGAGGCAGGCGGAGGAAGTCGAG GAGATATCAGATCCGGAGGAATTGCGCCGAATTTTCCATGTGAGATGTTC GCCCAGCTCATTTTACTAACTCTACTGCAGCATGTCAGGAGAATTATAGC AGTGTTGCAACGAGTTGAAGTGAGGCGCTTGTATTGGACTAATTTTCACA ATGAAAGCGGGTTGCTCTGGGTATAGCGCCCGTAGAAAAGGGGAGATCAG GTGGTTGTGGCGGTACCGGCGTTCGTCCCAGTGTCGGACAAGGCTACTGG GTGACCCGTCGCGTTTTGAAGTAAAATGCCCGCCATGGTTTCGTGCGGAG CTCGACATGCCTACACAGTCGTGTAGTGCGGCGCAACCGGTTCTCGTTTG TTTTTCACTGCCCTGATGATTTCACGGTCAAGTACGAAGGAGGAGATTAA TGCAGCTCCTCGCCCTCTCCCTTCACCGTATGTCACAGCTATACATAGCG ACGTTTTGCATCGTGTTGTCGCTTTCCGTCAAGGGCAGTCTTGCAGCAAT CGATCGCCATTTCACGTTAATGTGTCTCTTGCGTCATTGGCTCGCGGAGT TAGGCTCTGGAGGGGCAACGCGATGGGCTGGAGCACTTGATGCGGATCGT CAAGAAAGACAAGCAGGATTTGGAGGTGATT
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Coding sequence (CDS) from alignment at P-littoralis_Contig66:582471..586101+

>mRNA_P-littoralis_Contig66.163.1 ID=mRNA_P-littoralis_Contig66.163.1|Name=mRNA_P-littoralis_Contig66.163.1|organism=Pylaiella littoralis U1_48|type=CDS|length=729bp|location=Sequence derived from alignment at P-littoralis_Contig66:582471..586101+ (Pylaiella littoralis U1_48)
GTCGTAGCCGCACCCGCAGCGGCGAATGCGGGCTCGGCCTCACAGAAAGA
ATTCGAAAAACTGTTTGAGGCTTACGCGGCGAAGAACCCCGCCAACGGCG
AGCCCAACCACAACTGTAGGATGAAGCACGTGGTTTACAACCAGGTGGAC
CCCAGCCTTCGGAACTCGTACACCCGCCCGGCATACATGGACGACAAGAC
ATGGAAGAAGGCAAAAGACAATCCTGATCCAAGCAAGCTCGCCCCGGTAG
CATTGATTGGGTGGGAGAATCTCAAGGAGCGGCTGGTCGGACAACAGAAG
GAAATGCAAAAGATGGCGGAGTTTGTCGCGCTGATGCAAAATCAGACAAG
TACAGGCCTTCGCTCGGTGGCCTTGGTGAGGACACAGATGGAGGCATCGC
GGCGCAGGCATCTCGCGCAAGCGCATCGCTTCCTGAAGCTTCAGCGCAAG
CTGGATGCGGTCCGATGTTTGAACAAACCCCTGAGCGACCCCGAGCGGCA
TCTGAGGATGAGGCTGGAGGGTGTTCACCGATCCCTTGGCCCCCCGCAGC
AGACGCTCAAGGACCTCAATTCCACCCTTCTTCAGGGGGAGAGGCAGGCG
GAGGAAGTCGAGGAGATATCAGATCCGGAGGAATTGCGCCGAATTTTCCA
TGCTCTGGAGGGGCAACGCGATGGGCTGGAGCACTTGATGCGGATCGTCA
AGAAAGACAAGCAGGATTTGGAGGTGATT
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