mRNA_P-littoralis_Contig66.163.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig66.163.1 vs. uniprot
Match: D7FHF5_ECTSI (Nup54 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHF5_ECTSI) HSP 1 Score: 405 bits (1042), Expect = 7.000e-141 Identity = 211/240 (87.92%), Postives = 224/240 (93.33%), Query Frame = 1
Query: 13 PAAANAGSASQKEFEKLFEAYAAKNPANGEPNHNCRMKHVVYNQVDPSLRNSYTRPAYMDDKTWKKAK-DNPDPSKLAPVALIGWENLKERLVGQQKEMQKMAEFVALMQNQTSTGLRSVALVRTQMEASRRRHLAQAHRFLKLQRKLDAVRCLNKPLSDPERHLRMRLEGVHRSLGPPQQTLKDLNSTLLQGERQAEEVEEISDPEELRRIFHALEGQRDGLEHLMRIVKKDKQDLEVI 729
P AANAGSASQKEFEKLFEAYAAKNPANGEPN +CRMKHVVYNQVDPSLRNSYTRP +MDDKTW+KA+ DNPDPSKLAP A+IGWE+LKERLVGQQ+EM+KMAEFVALMQN T GLRSVALVRTQMEASRRRHLAQAHRFLKLQRKLDAVRCLNKPLSD ER LR RLEGVHRSLGPPQQTLKDLNS LLQGER EEVEEI+DPEELRRIF ALEGQR+GL HLMRIVKKD+QDLE++
Sbjct: 54 PPAANAGSASQKEFEKLFEAYAAKNPANGEPNPSCRMKHVVYNQVDPSLRNSYTRPPHMDDKTWQKAEEDNPDPSKLAPAAVIGWESLKERLVGQQQEMKKMAEFVALMQNTTRGGLRSVALVRTQMEASRRRHLAQAHRFLKLQRKLDAVRCLNKPLSDDERQLRTRLEGVHRSLGPPQQTLKDLNSALLQGERHMEEVEEITDPEELRRIFQALEGQREGLTHLMRIVKKDRQDLEIM 293
BLAST of mRNA_P-littoralis_Contig66.163.1 vs. uniprot
Match: A0A024TY86_9STRA (Nup54 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TY86_9STRA) HSP 1 Score: 114 bits (286), Expect = 7.250e-26 Identity = 72/214 (33.64%), Postives = 118/214 (55.14%), Query Frame = 1
Query: 118 RMKHVVYNQVDPSLRNSYTRPAYMDDKTWKKA-KDNPDPSKLAPVALIGWENLKERLVGQQKEMQKMAEFVALMQNQTSTGLRSVALVRTQMEASRRRHLAQAHRFLKLQRKLDAVRCLNKPLSDPERHLRMRLEGVHRSLGPPQQ---------TLKDLNSTLLQGERQAEEVEEISDPEELRRIFHALEGQRDGLEHLMRIVKKDKQDLEVI 729
R KH+ YN VDPS ++ Y+RP ++ +K W +A +DNPDP+ L P A++G++ L R+ QQ ++K + + Q ++ ++ R++H+A HR ++L RKL+ + L KPL E HL L+ V L P Q TL+ L + L +R + E E+L +F L+ QR+GLEHL RI+ +D +D++++
Sbjct: 256 RFKHMFYNAVDPSQKHLYSRPPHVGEKLWIQAQRDNPDPANLVPAAVVGFKELSTRIQLQQAHIKKFHGYAKDLVVQVQEMEKASRNTDVKLTQCRQQHIALFHRLVQLMRKLELFKQLRKPLHANEHHLAATLKHVQSLLDNPTQFKAHMHELMTLQSLQAALPTQQRPDAPLTE----EDLATVFRVLDKQREGLEHLTRILNQDMRDVQIM 465
BLAST of mRNA_P-littoralis_Contig66.163.1 vs. uniprot
Match: W4G2Y8_9STRA (Nup54 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G2Y8_9STRA) HSP 1 Score: 112 bits (280), Expect = 4.210e-25 Identity = 68/214 (31.78%), Postives = 119/214 (55.61%), Query Frame = 1
Query: 118 RMKHVVYNQVDPSLRNSYTRPAYMDDKTWKKA-KDNPDPSKLAPVALIGWENLKERLVGQQKEMQKMAEFVALMQNQTSTGLRSVALVRTQMEASRRRHLAQAHRFLKLQRKLDAVRCLNKPLSDPERHLRMRLEGVHRSLGPPQQ---------TLKDLNSTLLQGERQAEEVEEISDPEELRRIFHALEGQRDGLEHLMRIVKKDKQDLEVI 729
R K++ YN VDP+ ++ YTRP ++ +K W +A +DNPDP+ L P A++G++ L R+ QQ ++K + + Q ++ ++ R++H+A HR ++L RKL+ + L KPL E HL L+ V L P Q TL+ + + L +R ++ + E++ +F L+ QR+GLEHL RI+ +D +D++++
Sbjct: 237 RFKYMFYNAVDPAQKHLYTRPPHVGEKLWIQAQRDNPDPANLVPAAVVGFKELSTRIQLQQAHIKKFHGYAKDLVAQVQDMEKASRHTDVKLTQCRQQHIALFHRLVQLMRKLELFKQLRKPLHPSEHHLAATLKHVQSLLDNPTQFKAHMHELMTLQSMQAALPNQQRPDAQLTD----EDMATVFRVLDKQREGLEHLTRILNQDLRDVQIM 446
BLAST of mRNA_P-littoralis_Contig66.163.1 vs. uniprot
Match: A0A6G0XI91_9STRA (Nup54 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XI91_9STRA) HSP 1 Score: 112 bits (280), Expect = 5.240e-25 Identity = 68/209 (32.54%), Postives = 114/209 (54.55%), Query Frame = 1
Query: 118 RMKHVVYNQVDPSLRNSYTRPAYMDDKTWKKA-KDNPDPSKLAPVALIGWENLKERLVGQQKEMQKMAEFVALMQNQTSTGLRSVALVRTQMEASRRRHLAQAHRFLKLQRKLDAVRCLNKPLSDPERHLRMRLEGVHRSLGPPQQTLKDLNSTL----LQGERQAEEVEEISDPEELRRIFHALEGQRDGLEHLMRIVKKDKQDLEVI 729
R KH+ YN VDPSL++ YTRP ++ +K W +A +DNPDP+ P A++G++ L R+ QQ+E QK + + Q S ++ R++H+A HR ++L RKL+ + L KPL E L L+ + L P Q ++ + LQ + + E++ +F L+ QR+GLEHL +I+ +D +D++++
Sbjct: 251 RFKHMFYNAVDPSLKHLYTRPPHIGEKLWIQAQRDNPDPTNCVPAAVLGFKELSTRIKLQQEEAQKFHGYAKDLVKQVEEMKVSSRHTDVKLAQCRQQHVALCHRLVQLMRKLEVFKQLRKPLHVDELRLAAMLKQIQSMLDNPTQFKAHMHELITLQALQEAKPHHRPDAQLTEEDMATVFRLLDKQREGLEHLTKILNQDIRDVQIM 459
BLAST of mRNA_P-littoralis_Contig66.163.1 vs. uniprot
Match: A0A485LQI1_9STRA (Aste57867_23878 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LQI1_9STRA) HSP 1 Score: 112 bits (279), Expect = 7.550e-25 Identity = 66/211 (31.28%), Postives = 121/211 (57.35%), Query Frame = 1
Query: 118 RMKHVVYNQVDPSLRNSYTRPAYMDDKTWKKA-KDNPDPSKLAPVALIGWENLKERLVGQQKEMQKMAEFVALMQNQTSTGLRSVALVRTQMEASRRRHLAQAHRFLKLQRKLDAVRCLNKPLSDPERHLRMRLEGVHRSLGPPQQTLKDLNSTL-LQGERQAEEVEEISDPEELRR-----IFHALEGQRDGLEHLMRIVKKDKQDLEVI 729
R KH+ YN VDP+ ++ YTRP ++ +K W +A +DNPDP+ P A++G++ L R+ QQ+ QK + + Q ++ ++ R++H+A HR ++L RKL+ + L KPL+ E L M L+ + L P Q ++ + LQ ++A + ++ ++ ++L +F L+ QR+GLEHL +I+ +D +D++++
Sbjct: 269 RFKHMFYNAVDPAHKHLYTRPPHVGEKLWIQAQRDNPDPTNCVPAAVLGFKELATRIKLQQEHTQKFNGYAVDLVKQVQEMEKASRQTDVKLAHCRQQHIALFHRLVQLMRKLEVFKQLRKPLAADEHRLAMTLKHIQGLLDNPTQFKAHMHELMTLQSMQEAVQSQQRAENQQLTEDDMVTVFRLLDKQREGLEHLTKILNQDLRDVQIM 479
BLAST of mRNA_P-littoralis_Contig66.163.1 vs. uniprot
Match: A0A067CQG4_SAPPC (Nup54 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CQG4_SAPPC) HSP 1 Score: 109 bits (273), Expect = 4.780e-24 Identity = 68/211 (32.23%), Postives = 116/211 (54.98%), Query Frame = 1
Query: 118 RMKHVVYNQVDPSLRNSYTRPAYMDDKTWKKA-KDNPDPSKLAPVALIGWENLKERLVGQQKEMQKMAEFVALMQNQTSTGLRSVALVRTQMEASRRRHLAQAHRFLKLQRKLDAVRCLNKPLSDPERHLRMRLEGVHRSLGPPQQTLKDLNSTLLQGERQA------EEVEEISDPEELRRIFHALEGQRDGLEHLMRIVKKDKQDLEVI 729
R KH++YN VDP+ ++ Y RPA++ +K W +A +DNPDP+ P A+IG++ L R+ QQ+ K A + M Q ++ ++ R +H+A HR ++L RKL+ + L KPL E L L+ V L P Q +N + QA +E ++S+ ++L +F ++ QR GLEH+ +++ +D +D+E++
Sbjct: 260 RFKHMLYNAVDPAQKHLYVRPAHISEKLWTQAQRDNPDPANCVPAAVIGFKELSTRIKLQQEHADKFATYAEDMVTQVKEMEKTSRETDVKLAQCRHQHVALFHRLIQLMRKLEVFKNLRKPLHADEVKLLETLKKVASMLDNPTQFKARMNELMALQAMQAAKPHPDQEQCQLSE-QDLHLVFGIMDRQRQGLEHVTKVLSQDMRDVEIM 469
BLAST of mRNA_P-littoralis_Contig66.163.1 vs. uniprot
Match: A0A1V9ZK41_9STRA (Carbohydrate-binding protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZK41_9STRA) HSP 1 Score: 108 bits (270), Expect = 2.250e-23 Identity = 70/211 (33.18%), Postives = 116/211 (54.98%), Query Frame = 1
Query: 118 RMKHVVYNQVDPSLRNSYTRPAYMDDKTWKKA-KDNPDPSKLAPVALIGWENLKERLVGQQKEMQKMAEFVALMQNQTSTGLRSVALVRTQMEASRRRHLAQAHRFLKLQRKLDAVRCLNKPLSDPERHLRMRLEGVHRSLGPPQQTLKDLNSTL-LQG---ERQAEEVEE--ISDPEELRRIFHALEGQRDGLEHLMRIVKKDKQDLEVI 729
R KH+ YN VDP+ ++ Y RPA++ +K W +A +DNPDP+ P +IG++ L R+ QQ+ K A + M Q +S ++ R +H+A HR +KL RKL+ + L KPL E L L+ + L P Q +N + LQ ++ +E +E +SD +L+ +F + QR GLEH+ +++ +D +D+E++
Sbjct: 418 RFKHMFYNAVDPAQKHLYVRPAHISEKLWTQAQRDNPDPANCVPAPVIGFKELSTRIKLQQEHADKFATYADDMVTQVKEMEKSSRETDVKLAQCRHQHVALFHRLIKLMRKLEVFKNLRKPLHQDEVRLFATLKKIASLLDNPTQFKARMNELMALQAMLKDKPMDEADEGKLSD-HDLQLVFGIMNRQRQGLEHVTKVLTQDLRDVEIM 627
BLAST of mRNA_P-littoralis_Contig66.163.1 vs. uniprot
Match: UPI000A2A8828 (nucleoporin p54 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A8828) HSP 1 Score: 88.6 bits (218), Expect = 1.630e-16 Identity = 63/195 (32.31%), Postives = 101/195 (51.79%), Query Frame = 1
Query: 172 TRPAYMDDKTWKKAK-DNPDPSKLAPVALIGWENLKERLVGQQKEMQKMAEFVALMQNQTSTGLRSVALVRTQMEASRRRHLAQAHRFLKLQRKLDAVRCLNKPLSDPERHLRMRLEGVHRSLGPPQQTLKDLNSTLLQGERQAE--------EVEEISDPEELRRIFHALEGQRDGLEHLMRIVKKDKQDLEVI 729
T PA +D W++AK DNPDP KL PV + G+ENLK+RL +++E + + ++++ + +T + A ++ +R+HL +HR L++ K +++R + E LR+ LE + L P Q LN L Q Q E DP + LE Q++GL HL+ I+K D +DL+ I
Sbjct: 321 TPPAGIDALLWEQAKKDNPDPQKLIPVPMTGFENLKKRLEFEEQETTQHQKRLSIISEEIATLQGNHATTMAKLAQFKRKHLELSHRVLEVMVKQESIRKAGYSVQAEEEQLRVHLESLQAELNAPLQFKARLNELLSQIRLQQSQXVGSDRTEGRYSMDPSLQNELKQHLEQQQEGLMHLISIIKDDLEDLKTI 515
BLAST of mRNA_P-littoralis_Contig66.163.1 vs. uniprot
Match: A0A7S2UV49_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV49_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 7.460e-16 Identity = 53/179 (29.61%), Postives = 95/179 (53.07%), Query Frame = 1
Query: 196 KTWKKA-KDNPDPSKLAPVALIGWENLKERLVGQQKEMQKMAEFVALMQNQTSTGLRSVALVRTQMEASRRRHLAQAHRFLKLQRKLDAVRCLNKPLSDPERHLRMRLEGVHRSLGPPQQTLKDLNSTLLQGERQAEEVEEISDPEELRRIFHALEGQRDGLEHLMRIVKKDKQDLEVI 729
+ W +A + NPDP LAP ++G L R+ Q + + +V +++ + ++ + ME SR RH A++FL++ K++ +RC ++ E LR RLE + ++L P LK L QA ++L+ I +AL+ Q+ GLEHL+ ++KKD +D++++
Sbjct: 3 QAWDRAERANPDPESLAPTPIVGQAALLGRIQHQTQHTADLQSYVKRLRDTVHSLQQTAHRTESAMEKSRLRHRRLANKFLQVLLKVEVLRCQGLGVAPEEHQLRARLEQLAKALQDPHSRLKHLLQLAPHTATQAPGKPAHMGEDDLKAIHNALQNQKQGLEHLINVLKKDVRDVQLM 181
BLAST of mRNA_P-littoralis_Contig66.163.1 vs. uniprot
Match: UPI001EAFAFE2 (nucleoporin p54-like isoform X2 n=6 Tax=Haliotis TaxID=6452 RepID=UPI001EAFAFE2) HSP 1 Score: 82.8 bits (203), Expect = 1.680e-14 Identity = 60/191 (31.41%), Postives = 99/191 (51.83%), Query Frame = 1
Query: 178 PAYMDDKTWKKAK-DNPDPSKLAPVALIGWENLKERLVGQQKEMQKMAEFVALMQNQTSTGLRSVALVRTQMEASRRRHLAQAHRFLKLQRKLDAVRCLNKPLSDPERHLRMRLEGVHRSLGPPQQTLKDLNSTLLQ------GERQAEEVEEISDPEELRRIFHALEGQRDGLEHLMRIVKKDKQDLEVI 729
PA +D W++AK DNPDP++L PV +IG++ ++ RL QQ++ + + + +M + + + + E +R+HL HR L++ K + R + + E HL+++LE + L P Q LN + Q Q +EV D E I L+ Q+DGL HL++I+K D DL +I
Sbjct: 392 PAGIDPVLWQQAKLDNPDPTRLIPVPMIGFKEVQRRLQHQQEQTRLHQQRLDVMSGDLTDLQNKHSNMLARQEEYKRKHLELGHRLLQVIVKQEIYRKMGYAIQAEEEHLKVQLEVLQTELNHPTQFKGRLNELMSQIRMQNHVSSQRQEVSFQMDTELQSEIKQLLKQQQDGLNHLIQILKDDASDLHLI 582 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig66.163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig66.163.1 >prot_P-littoralis_Contig66.163.1 ID=prot_P-littoralis_Contig66.163.1|Name=mRNA_P-littoralis_Contig66.163.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=243bp VVAAPAAANAGSASQKEFEKLFEAYAAKNPANGEPNHNCRMKHVVYNQVDback to top mRNA from alignment at P-littoralis_Contig66:582471..586101+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig66.163.1 ID=mRNA_P-littoralis_Contig66.163.1|Name=mRNA_P-littoralis_Contig66.163.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3631bp|location=Sequence derived from alignment at P-littoralis_Contig66:582471..586101+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig66:582471..586101+ >mRNA_P-littoralis_Contig66.163.1 ID=mRNA_P-littoralis_Contig66.163.1|Name=mRNA_P-littoralis_Contig66.163.1|organism=Pylaiella littoralis U1_48|type=CDS|length=729bp|location=Sequence derived from alignment at P-littoralis_Contig66:582471..586101+ (Pylaiella littoralis U1_48)back to top |