mRNA_P-littoralis_Contig651.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig651.1.1
Unique NamemRNA_P-littoralis_Contig651.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig651.1.1 vs. uniprot
Match: D8LDL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDL5_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 2.820e-23
Identity = 87/180 (48.33%), Postives = 98/180 (54.44%), Query Frame = 1 
Query:  553 QQTGRSVDNGXXXXXXXXXXSFLSS-SVSASEGGGDLGRQFC-RQRVSPPPPVVFIEGEGRNVSWRPRDDDRLLRRDVGG-----------GAGGAEVMRGVPDGGDARLILTATGGGRDDGEGGDEGAGEAEPREIRVTTGQLESAGSESENLGARRVRDEVWVELAGMLALSTSEPTA 1053
            QQT RS  N           SFLSS S    E G  LGRQ   R  VSPP PVVF+EGEGRN  WRP DDDRLLR + G            GA GAE +      GDARLIL A        E  D+G  E   REIR+TTG+LE+A    E+     V+D  WVELAGMLA+S + PTA
Sbjct:  684 QQT-RSTGNVVEEHYYLDDASFLSSVSGGGEEDGSGLGRQLGGRLHVSPPGPVVFVEGEGRNRYWRPADDDRLLRGEGGSSAAAFGATSATGASGAEALHS----GDARLILAAK-------EDNDDGRPE---REIRLTTGRLEAAAVAPES-----VQDGAWVELAGMLAMSAAPPTA 843
[Close]
BLAST of mRNA_P-littoralis_Contig651.1.1 vs. uniprot
Match: A0A6H5L5H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H4_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 4.580e-23
Identity = 74/137 (54.01%), Postives = 88/137 (64.23%), Query Frame = 1 
Query:  676 RQRVSPPPPVVFIEGEGRNVSWRPRDDDRLLRRDVGG-----------GAGGAEVMRGVPDGGDARLILTATGGGRDDGEGGDEGAGEAEPREIRVTTGQLESAGSESENLGARRVRDEVWVELAGMLALSTSEPTA 1053
            R+ VSPP PVVF+EGEGRN SWRP DDDRLLR + G            GAGGAE +    DGGDARLIL A  GGR   E  D+G  E   R+IR+TTG+LE+A    E+     V++  WVELAGMLA+S + PTA
Sbjct:  500 RRHVSPPGPVVFVEGEGRNRSWRPADDDRLLRGEGGSSAAAFGATSATGAGGAEDL----DGGDARLILAAKEGGR---EXDDDGRPE---RDIRLTTGRLEAAAVAPES-----VQNGAWVELAGMLAMSAAPPTA 621
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig651.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDL5_ECTSI2.820e-2348.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5H4_9PHAE4.580e-2354.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig651contigP-littoralis_Contig651:2118..3316 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1153
Hectar predicted targeting categorymitochondrion
Exons2
Cds size699
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791362.255998-CDS-P-littoralis_Contig651:2117..27451680791362.255998-CDS-P-littoralis_Contig651:2117..2745Pylaiella littoralis U1_48CDSP-littoralis_Contig651 2118..2745 -
1680791362.2678664-CDS-P-littoralis_Contig651:2792..28631680791362.2678664-CDS-P-littoralis_Contig651:2792..2863Pylaiella littoralis U1_48CDSP-littoralis_Contig651 2793..2863 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791362.2781003-UTR-P-littoralis_Contig651:2863..33161680791362.2781003-UTR-P-littoralis_Contig651:2863..3316Pylaiella littoralis U1_48UTRP-littoralis_Contig651 2864..3316 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig651.1.1prot_P-littoralis_Contig651.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig651 2118..2863 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig651.1.1

>prot_P-littoralis_Contig651.1.1 ID=prot_P-littoralis_Contig651.1.1|Name=mRNA_P-littoralis_Contig651.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=233bp
MHRLRRLLTGCRCTFNPSPPSATLLPSASNAKGQQTGRSVDNGGGGGDYF
DDASFLSSSVSASEGGGDLGRQFCRQRVSPPPPVVFIEGEGRNVSWRPRD
DDRLLRRDVGGGAGGAEVMRGVPDGGDARLILTATGGGRDDGEGGDEGAG
EAEPREIRVTTGQLESAGSESENLGARRVRDEVWVELAGMLALSTSEPTA
GLTNVVGTTAAELPAAGEAAQPLEPAPTVSPEL
back to top

mRNA from alignment at P-littoralis_Contig651:2118..3316-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig651.1.1 ID=mRNA_P-littoralis_Contig651.1.1|Name=mRNA_P-littoralis_Contig651.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1199bp|location=Sequence derived from alignment at P-littoralis_Contig651:2118..3316- (Pylaiella littoralis U1_48)
TGGAGAAACGCGGAGGAAAGGCGTCTTCTTCTCGCCCTGAGCCCGGATCC
GCCGCGGCCTTGGCAAGCGCCCGCGAGCAGCGTAGGTTTGCCAGTCGGGC
GGTGGACGAATTGCGGCAGGAGATGCGCGACCGGGAGGGCCGGCTCGAGC
GCGAGTTGGACAAACTCAGGCAATCCCGGTCGCAACGCACCGCTCCGGTA
ACTCCGACGCCCGCTGATATATCCGAACCGGCAGCGAAGGCAGCGATTGC
CCCGACCGTTGGTAGGAAGCGTGGCGCGGTGGTGGTGGCAAGCCGAGGGC
GTCAAAGCAAAGGGCGACCGTTGTCGCGACCGCTCGTGTCGAAGGTGAAG
CCTGCTGCTTCTCACAAGCTCGTCGGGGAAGAGGAGAAGGGAGACCAGAG
CGGTGATGATGTACCCCCGCAGGTAGCACCAACGCCGACGATCGAGACAG
CGGATGCACAGGCTCAGACGACTATTGACGGGGTGCAGGTGTACTTTCAA
CCCCAGCCCACCGTCCGCGACGCTCTCCGGACGATCGAAGAGGAAAACCG
CCAAGCGTTGCCGACAAAAGCGTTGCCAAGTGCCTCCAACGCCAAGGGCC
AGCAGACTGGGAGGAGCGTAGACAACGGCGGCGGTGGCGGCGACTACTTC
GATGATGCATCGTTCTTGTCATCGTCGGTGTCGGCGTCGGAGGGGGGTGG
AGATCTCGGCCGGCAGTTCTGCCGGCAGCGGGTCTCTCCACCGCCCCCAG
TGGTTTTCATAGAGGGAGAAGGCCGGAACGTTTCCTGGCGACCGCGCGAT
GACGACCGGCTGCTCCGGCGGGACGTCGGCGGTGGCGCCGGCGGCGCAGA
AGTCATGCGAGGGGTACCCGACGGCGGAGACGCCAGGCTCATCCTCACCG
CCACTGGAGGGGGCAGGGATGATGGCGAGGGCGGGGACGAAGGCGCGGGC
GAAGCGGAGCCGCGAGAGATCCGGGTGACCACTGGGCAACTTGAAAGCGC
CGGGTCAGAGTCTGAGAATCTTGGAGCACGGCGGGTGCGGGACGAAGTGT
GGGTTGAGCTAGCCGGCATGTTGGCGCTGTCCACTTCTGAGCCGACGGCG
GGGCTGACAAACGTTGTCGGCACGACGGCAGCGGAATTACCGGCGGCGGG
AGAGGCGGCACAACCCTTGGAGCCGGCGCCGACGGTTTCGCCGGAACTC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig651:2118..3316-

>mRNA_P-littoralis_Contig651.1.1 ID=mRNA_P-littoralis_Contig651.1.1|Name=mRNA_P-littoralis_Contig651.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=699bp|location=Sequence derived from alignment at P-littoralis_Contig651:2118..3316- (Pylaiella littoralis U1_48)
ATGCACAGGCTCAGACGACTATTGACGGGGTGCAGGTGTACTTTCAACCC
CAGCCCACCGTCCGCGACGCTGTTGCCAAGTGCCTCCAACGCCAAGGGCC
AGCAGACTGGGAGGAGCGTAGACAACGGCGGCGGTGGCGGCGACTACTTC
GATGATGCATCGTTCTTGTCATCGTCGGTGTCGGCGTCGGAGGGGGGTGG
AGATCTCGGCCGGCAGTTCTGCCGGCAGCGGGTCTCTCCACCGCCCCCAG
TGGTTTTCATAGAGGGAGAAGGCCGGAACGTTTCCTGGCGACCGCGCGAT
GACGACCGGCTGCTCCGGCGGGACGTCGGCGGTGGCGCCGGCGGCGCAGA
AGTCATGCGAGGGGTACCCGACGGCGGAGACGCCAGGCTCATCCTCACCG
CCACTGGAGGGGGCAGGGATGATGGCGAGGGCGGGGACGAAGGCGCGGGC
GAAGCGGAGCCGCGAGAGATCCGGGTGACCACTGGGCAACTTGAAAGCGC
CGGGTCAGAGTCTGAGAATCTTGGAGCACGGCGGGTGCGGGACGAAGTGT
GGGTTGAGCTAGCCGGCATGTTGGCGCTGTCCACTTCTGAGCCGACGGCG
GGGCTGACAAACGTTGTCGGCACGACGGCAGCGGAATTACCGGCGGCGGG
AGAGGCGGCACAACCCTTGGAGCCGGCGCCGACGGTTTCGCCGGAACTC
back to top