mRNA_P-littoralis_Contig60.126.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig60.126.2
Unique NamemRNA_P-littoralis_Contig60.126.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig60.126.2 vs. uniprot
Match: D8LGY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY2_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 8.360e-62
Identity = 135/231 (58.44%), Postives = 157/231 (67.97%), Query Frame = 1 
Query:   64 QQQQASGWAAVEGVPVARAMAKPFAYVGIPIDGNEDDNYXXXXXXXXXXXXXXXXXGYAYGDEEAGAMRVHGNVGLGVGSDFAGAEEQARASARRDNLDFRERKRFTEAQARSRVEEDLRAIEVARINAKRRDAEGLDMRPHPGNRLEPEASIFGKEVDREGGTGATGAGPGXXXXXXXXXXXXXXXXXXEEAASTRG------SGGYQCAEYEPAEYVIPEYKSIYGDPS 738
            Q QQ  G+AAVEGVPVARA  +PFAYVG+PID   DDN+                   +Y +  AGA RVHG+V +GVG+D+ GA E A+ASARRDN  F E+KRFTEAQA+SRVEEDLRAIE ARINAKRRDAEGLDMRPHPGNRLEPE +    E +R+      GAG  XXXXXXXXXX        EE+A+ +G       GGYQ +EY PAEY IP+YKS+Y  PS
Sbjct:   37 QHQQPPGFAAVEGVPVARATMRPFAYVGVPID---DDNHNELRRPSTAAA--------SYDNSRAGAGRVHGDVSVGVGADYDGAAEAAKASARRDNAAFFEKKRFTEAQAKSRVEEDLRAIETARINAKRRDAEGLDMRPHPGNRLEPEDATPLGEKERD-----YGAGGXXXXXXXXXXXGKEAAAVGEESAAGKGCEQEASGGGYQFSEYVPAEYDIPDYKSVYERPS 251
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig60.126.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGY2_ECTSI8.360e-6258.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig60contigP-littoralis_Contig60:554922..556311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size751
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_001480.1
Cds size750
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791251.890302-CDS-P-littoralis_Contig60:554921..5552981680791251.890302-CDS-P-littoralis_Contig60:554921..555298Pylaiella littoralis U1_48CDSP-littoralis_Contig60 554922..555298 +
1680791251.9008071-CDS-P-littoralis_Contig60:555938..5563111680791251.9008071-CDS-P-littoralis_Contig60:555938..556311Pylaiella littoralis U1_48CDSP-littoralis_Contig60 555939..556311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig60.126.2prot_P-littoralis_Contig60.126.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig60 554922..556311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig60.126.2

>prot_P-littoralis_Contig60.126.2 ID=prot_P-littoralis_Contig60.126.2|Name=mRNA_P-littoralis_Contig60.126.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=250bp
TEQQPPKRPLQPSVRGSTQQPQQQQASGWAAVEGVPVARAMAKPFAYVGI
PIDGNEDDNYSSSSAVAAGGSLLPPPPGYAYGDEEAGAMRVHGNVGLGVG
SDFAGAEEQARASARRDNLDFRERKRFTEAQARSRVEEDLRAIEVARINA
KRRDAEGLDMRPHPGNRLEPEASIFGKEVDREGGTGATGAGPGGGAAAAA
AAAAAGKGSEQEEAASTRGSGGYQCAEYEPAEYVIPEYKSIYGDPSETY*
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mRNA from alignment at P-littoralis_Contig60:554922..556311+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig60.126.2 ID=mRNA_P-littoralis_Contig60.126.2|Name=mRNA_P-littoralis_Contig60.126.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1390bp|location=Sequence derived from alignment at P-littoralis_Contig60:554922..556311+ (Pylaiella littoralis U1_48)
ACAGAACAGCAGCCACCAAAGCGTCCTCTTCAACCATCCGTTCGCGGCTC
CACACAACAACCACAGCAACAACAGGCGTCAGGCTGGGCCGCTGTTGAGG
GGGTGCCTGTCGCCCGCGCCATGGCGAAACCTTTCGCGTACGTCGGCATC
CCCATCGACGGCAACGAAGACGACAACTACAGCAGTAGTAGTGCAGTAGC
AGCAGGCGGGTCGCTGCTGCCGCCTCCTCCGGGTTACGCTTACGGCGATG
AGGAGGCCGGAGCGATGAGGGTTCACGGCAACGTCGGCTTGGGCGTGGGC
AGCGACTTTGCCGGGGCGGAAGAGCAGGCACGCGCTAGCGCCAGGAGAGA
TAATCTGGACTTCCGCGAGAGGAAGAGGTAAGTGAGACTCAGACCAAGGG
TTGGCTCAAGGCTTTGAGAAGGCTTTGAGTTTCGGGGGGGCGGGGTGTGA
TACCTGTCGCACACATATTTATTTATTTCGACTGTAACAAGTCACGTAGG
CGCCGACACAGACCCTCGCAATCCTGCTGGACCAAAACGGGCCTCGTTGA
ATTTTACAGAGCGTAGAGGACGGCGGCTCACTGCCGGCCTGTATGTGACT
GCTGTGACGGTGACTGCAACCGCGCTGACTTGTGCGCACTCTGATGTATA
TTTTCTGTCTCTCTGCCTCTCTCTCTCACACACACGCACCTCACATACAG
TTCAGCGTCAGGCCTCCAGCAGATCATATAGTTCTCCTTCCAAGAAATTC
GTACGCAACGACTCGATTTTCCTGTCACTATAAACTCAGTGTTTTAGCGC
TGATGATCCCAAGAGGTACAGCTTCTATTTGATTTCCAGCTCGTTGTCGT
GTCGAAATTCGCACACGCGCGCTCCCGCCGCAAGTCCTGCTTTTGTTACT
CCTCACTCTCACAACCCTCCACCCCGCACCTGCCGCACACACGCCTCGGA
ACTGCTGTCGTCAACCCAAAACCGTCGTCTTCAACGATGATGATATATTT
TGTATCCTTCTGCCAAGGTTCACGGAGGCGCAGGCGCGATCGCGAGTGGA
AGAGGACCTGCGAGCGATAGAGGTCGCGCGCATCAACGCCAAGCGGCGGG
ACGCGGAAGGCCTCGACATGCGCCCCCACCCTGGAAACCGCCTCGAGCCG
GAGGCGAGTATTTTCGGAAAGGAGGTTGACCGTGAAGGGGGAACGGGGGC
GACGGGGGCAGGGCCAGGGGGCGGCGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCGGGGAAAGGGAGTGAGCAAGAGGAAGCGGCGTCGACGCGGGGCTCG
GGGGGTTACCAGTGCGCCGAGTACGAGCCGGCGGAGTACGTCATTCCAGA
ATACAAGTCCATCTACGGGGACCCGTCGGAGACTTATTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig60:554922..556311+

>mRNA_P-littoralis_Contig60.126.2 ID=mRNA_P-littoralis_Contig60.126.2|Name=mRNA_P-littoralis_Contig60.126.2|organism=Pylaiella littoralis U1_48|type=CDS|length=750bp|location=Sequence derived from alignment at P-littoralis_Contig60:554922..556311+ (Pylaiella littoralis U1_48)
ACAGAACAGCAGCCACCAAAGCGTCCTCTTCAACCATCCGTTCGCGGCTC
CACACAACAACCACAGCAACAACAGGCGTCAGGCTGGGCCGCTGTTGAGG
GGGTGCCTGTCGCCCGCGCCATGGCGAAACCTTTCGCGTACGTCGGCATC
CCCATCGACGGCAACGAAGACGACAACTACAGCAGTAGTAGTGCAGTAGC
AGCAGGCGGGTCGCTGCTGCCGCCTCCTCCGGGTTACGCTTACGGCGATG
AGGAGGCCGGAGCGATGAGGGTTCACGGCAACGTCGGCTTGGGCGTGGGC
AGCGACTTTGCCGGGGCGGAAGAGCAGGCACGCGCTAGCGCCAGGAGAGA
TAATCTGGACTTCCGCGAGAGGAAGAGGTTCACGGAGGCGCAGGCGCGAT
CGCGAGTGGAAGAGGACCTGCGAGCGATAGAGGTCGCGCGCATCAACGCC
AAGCGGCGGGACGCGGAAGGCCTCGACATGCGCCCCCACCCTGGAAACCG
CCTCGAGCCGGAGGCGAGTATTTTCGGAAAGGAGGTTGACCGTGAAGGGG
GAACGGGGGCGACGGGGGCAGGGCCAGGGGGCGGCGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCGGGGAAAGGGAGTGAGCAAGAGGAAGCGGCGTCGAC
GCGGGGCTCGGGGGGTTACCAGTGCGCCGAGTACGAGCCGGCGGAGTACG
TCATTCCAGAATACAAGTCCATCTACGGGGACCCGTCGGAGACTTATTGA
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