mRNA_P-littoralis_Contig6.52.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig6.52.1
Unique NamemRNA_P-littoralis_Contig6.52.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig6.52.1 vs. uniprot
Match: A0A6H5JT57_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT57_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.170e-14
Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:   46 GVMLSTFGGKIKISTRVHDMYLHRCAADDIDHPYHGMCYVVWLRLVRTEKAAPTSSKKSRDDGHDEESES 255
            G +L+T GGKI+IS  +H++YL RC  +D +HPYHGMCY VW RLVR E   P   K +R    D + ES
Sbjct:  371 GAILNTSGGKIRISISLHELYLRRCLPNDTEHPYHGMCYAVWARLVRIENT-PRKQKPARRPNDDNDRES 439
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BLAST of mRNA_P-littoralis_Contig6.52.1 vs. uniprot
Match: A0A6H5KTA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA2_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.200e-14
Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:   46 GVMLSTFGGKIKISTRVHDMYLHRCAADDIDHPYHGMCYVVWLRLVRTEKAAPTSSKKSRDDGHDEESES 255
            G +L+T GGKI+IS  +H++YL RC  +D +HPYHGMCY VW RLVR E   P   K +R    D + ES
Sbjct: 3243 GAILNTSGGKIRISISLHELYLRRCLPNDTEHPYHGMCYAVWARLVRIENT-PRKQKPARRPNDDNDRES 3311
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BLAST of mRNA_P-littoralis_Contig6.52.1 vs. uniprot
Match: A0A6H5K882_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K882_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.830e-10
Identity = 26/53 (49.06%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:   46 GVMLSTFGGKIKISTRVHDMYLHRCAADDIDHPYHGMCYVVWLRLVRTEKAAP 204
            GV++S  GG++ ++   H +YLHRC+ +D +H  HGM YV W RLVRTE+  P
Sbjct:  799 GVVVSVVGGRLTVNQWAHVLYLHRCSPEDTEHALHGMSYVSWTRLVRTERYTP 851
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig6.52.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JT57_9PHAE1.170e-1451.43ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5KTA2_9PHAE1.200e-1451.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K882_9PHAE1.830e-1049.06ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig6contigP-littoralis_Contig6:181478..181791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size315
Hectar predicted targeting categoryother localisation
Exons1
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791233.4123971-CDS-P-littoralis_Contig6:181479..1817911680791233.4123971-CDS-P-littoralis_Contig6:181479..181791Pylaiella littoralis U1_48CDSP-littoralis_Contig6 181480..181791 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig6.52.1prot_P-littoralis_Contig6.52.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig6 181480..181791 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig6.52.1

>prot_P-littoralis_Contig6.52.1 ID=prot_P-littoralis_Contig6.52.1|Name=mRNA_P-littoralis_Contig6.52.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
DDIDDDNDDVDGGANGVMLSTFGGKIKISTRVHDMYLHRCAADDIDHPYH
GMCYVVWLRLVRTEKAAPTSSKKSRDDGHDEESESDEDNDFDDKNGGDDC
TDGI
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mRNA from alignment at P-littoralis_Contig6:181478..181791-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig6.52.1 ID=mRNA_P-littoralis_Contig6.52.1|Name=mRNA_P-littoralis_Contig6.52.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=314bp|location=Sequence derived from alignment at P-littoralis_Contig6:181478..181791- (Pylaiella littoralis U1_48)
GACGACATCGACGATGACAACGACGACGTCGATGGTGGAGCAAACGGCGT
CATGCTTTCAACCTTCGGTGGTAAGATCAAGATTTCAACCAGGGTGCACG
ACATGTACCTGCATCGTTGCGCCGCCGACGATATTGACCACCCTTATCAC
GGAATGTGCTACGTTGTATGGCTGCGCCTTGTTCGCACGGAGAAAGCGGC
GCCAACTTCTTCCAAGAAGTCTCGCGATGATGGTCACGATGAGGAGTCTG
AGTCAGACGAAGACAACGATTTCGACGACAAGAACGGCGGAGACGACTGC
ACTGACGGCATCGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig6:181478..181791-

>mRNA_P-littoralis_Contig6.52.1 ID=mRNA_P-littoralis_Contig6.52.1|Name=mRNA_P-littoralis_Contig6.52.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig6:181478..181791- (Pylaiella littoralis U1_48)
GACGACATCGACGATGACAACGACGACGTCGATGGTGGAGCAAACGGCGT
CATGCTTTCAACCTTCGGTGGTAAGATCAAGATTTCAACCAGGGTGCACG
ACATGTACCTGCATCGTTGCGCCGCCGACGATATTGACCACCCTTATCAC
GGAATGTGCTACGTTGTATGGCTGCGCCTTGTTCGCACGGAGAAAGCGGC
GCCAACTTCTTCCAAGAAGTCTCGCGATGATGGTCACGATGAGGAGTCTG
AGTCAGACGAAGACAACGATTTCGACGACAAGAACGGCGGAGACGACTGC
ACTGACGGCATC
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