mRNA_P-littoralis_Contig210.55.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig210.55.2
Unique NamemRNA_P-littoralis_Contig210.55.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig210.55.2 vs. uniprot
Match: D8LAX3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX3_ECTSI)

HSP 1 Score: 244 bits (622), Expect = 1.090e-77
Identity = 140/225 (62.22%), Postives = 156/225 (69.33%), Query Frame = 1 
Query:  160 RVPDPSEVLHTRRGGSMDPHTRLPGYTCSTVLGVTQVWFAAHHVGHVLKTLRSGRLDELHRRASKQAARNPHVLDARVCRAVLWWSILGEAMDAAKEAERRXXXXXXXXXLVVVLAVSQRRGISNSCSSRSNXXXSNASTQRGLGTPPSGLPRLPSRTWSLPPLTXXXXXXXXXXXXXXXXXXXXXXGRAPCHGGESTPAAAVVRGYQSVHLDEAAILSKIYDYL 834
            RVPDPSEV  TRRGG+MDPHTRLPGYTCST+LGVTQVWF AHHVGHVLKTLRSGRLD+LHRR      RNPHVLDARVCRAV+WWSIL EAM+AAKEAERR  XX     LVV LAVSQRR    +   ++    S    QR  G   SG+ R  SRTWSLPPLT                      GRAPCHGG +  A +VVR  ++VHLDEAAIL+KIY++L
Sbjct:    9 RVPDPSEVFQTRRGGAMDPHTRLPGYTCSTMLGVTQVWFTAHHVGHVLKTLRSGRLDDLHRRMK----RNPHVLDARVCRAVIWWSILAEAMEAAKEAERRRAXXRECRRLVVGLAVSQRRSDPGTRRGKT----STHEQQRASGGSRSGMSRSSSRTWSLPPLTEAIHLKGGEEDQGFSSGGG---GRAPCHGG-AVAAPSVVRECRAVHLDEAAILNKIYEFL 221
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BLAST of mRNA_P-littoralis_Contig210.55.2 vs. uniprot
Match: A0A6H5JYH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYH9_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 6.130e-57
Identity = 121/224 (54.02%), Postives = 139/224 (62.05%), Query Frame = 1 
Query:  208 MDPHTRLPGYTCSTVLGVTQV---------------WFAAHHVGHVLKTLRSGRLDELHRRASKQAARNPHVLDARVCRAVLWWSILGEAMDAAKEAERRXXXXXXXXXLVVVLAVSQRRGISNSCSSRSNXXXSNASTQRGLGTPPSGLPRLPSRTWSLPPLTXXXXXXXXXXXXXXXXXXXXXXGRAPCHGGESTPAAAVVRGYQSVHLDEAAILSKIYDYL 834
            MDPHTRLPGYTCST+LGVTQV               WF AHHVGHVLKTLRSGRLD+LHRR      RNPHVLDARVCRAV+WWSIL EAM+AAKE    XXXXX    LVV LAVSQRR   +   +R     ++   +   G+  SG+ R  SRTWSLPPLT                       RAPCHGG +  A   VR  ++VHLDEAAIL+K+Y++L
Sbjct:    1 MDPHTRLPGYTCSTMLGVTQVIDGSHQATSDLAPDVWFTAHHVGHVLKTLRSGRLDDLHRRMK----RNPHVLDARVCRAVIWWSILAEAMEAAKEXXXXXXXXXECRRLVVGLAVSQRR---SDPGTRRGKTFTHEQQRASGGSSRSGMSRSSSRTWSLPPLTDATHLKGGEEDQGVSSGGGW---RAPCHGG-AVAAPPAVRECRAVHLDEAAILNKVYEFL 213
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig210.55.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LAX3_ECTSI1.090e-7762.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYH9_9PHAE6.130e-5754.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig210contigP-littoralis_Contig210:324657..328486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size837
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_006110.1
Cds size807
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig210.55.2prot_P-littoralis_Contig210.55.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig210 324687..328486 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790029.9223516-UTR-P-littoralis_Contig210:324656..3246861680790029.9223516-UTR-P-littoralis_Contig210:324656..324686Pylaiella littoralis U1_48UTRP-littoralis_Contig210 324657..324686 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790029.9331212-CDS-P-littoralis_Contig210:324686..3247421680790029.9331212-CDS-P-littoralis_Contig210:324686..324742Pylaiella littoralis U1_48CDSP-littoralis_Contig210 324687..324742 +
1680790029.9439774-CDS-P-littoralis_Contig210:326041..3262221680790029.9439774-CDS-P-littoralis_Contig210:326041..326222Pylaiella littoralis U1_48CDSP-littoralis_Contig210 326042..326222 +
1680790029.9605124-CDS-P-littoralis_Contig210:327404..3275001680790029.9605124-CDS-P-littoralis_Contig210:327404..327500Pylaiella littoralis U1_48CDSP-littoralis_Contig210 327405..327500 +
1680790029.9712453-CDS-P-littoralis_Contig210:327898..3281291680790029.9712453-CDS-P-littoralis_Contig210:327898..328129Pylaiella littoralis U1_48CDSP-littoralis_Contig210 327899..328129 +
1680790029.9797723-CDS-P-littoralis_Contig210:328186..3282701680790029.9797723-CDS-P-littoralis_Contig210:328186..328270Pylaiella littoralis U1_48CDSP-littoralis_Contig210 328187..328270 +
1680790029.9908214-CDS-P-littoralis_Contig210:328327..3284861680790029.9908214-CDS-P-littoralis_Contig210:328327..328486Pylaiella littoralis U1_48CDSP-littoralis_Contig210 328328..328486 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig210.55.2

>prot_P-littoralis_Contig210.55.2 ID=prot_P-littoralis_Contig210.55.2|Name=mRNA_P-littoralis_Contig210.55.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=269bp
MCVCLPIHRHRYHGLAQSRAETTPRSIEMCTPSGRKVMNRGSFRVPDPSE
VLHTRRGGSMDPHTRLPGYTCSTVLGVTQVWFAAHHVGHVLKTLRSGRLD
ELHRRASKQAARNPHVLDARVCRAVLWWSILGEAMDAAKEAERRRAKRRE
SRRLVVVLAVSQRRGISNSCSSRSNSSSSNASTQRGLGTPPSGLPRLPSR
TWSLPPLTTAAAAAAAASSGGGGGGGGGDGGRAPCHGGESTPAAAVVRGY
QSVHLDEAAILSKIYDYL*
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mRNA from alignment at P-littoralis_Contig210:324657..328486+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig210.55.2 ID=mRNA_P-littoralis_Contig210.55.2|Name=mRNA_P-littoralis_Contig210.55.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3830bp|location=Sequence derived from alignment at P-littoralis_Contig210:324657..328486+ (Pylaiella littoralis U1_48)
CTCAGCGCTACTCGAGTATCCCGTCCGTGCATGTGTGTTTGTCTCCCGAT
CCACCGCCATCGTTACCACGGACTCGCCCAATCACGGTGAGTCGGAGTGC
GGCTTTCCTCTCCAACTTGGTGGAAGTGCCTGCTGTGCTCAACATCTATG
GGATGTGTGGGTCATGGACCAGTTTTTTCTTGTGTAGGCGTGTGGGTCTC
CCATCTCCCATCATGGATGGTGTGTGTGTGTGTGTGTGTGTGTGTTGGCT
TTGCAGGTGATCAAAGTTCATCAAGGCTTGAACCAAGCAGATCGCCAAGG
CGTTCTGTTTTACAGTACCCACGGTCTTCGGGCACTCGAGGGTGAGGATA
GTGGTATAGTCGTGCATCATCGGCTCCCAGGTTGCCGGAGTCCCTGTAAG
GAGGAGCGGAGTCGTGGTGTGGTTTGGACTGACAAAACACAGAAAGATCA
AAGACAGTTCGGGTGTGTGTGTGGTTCCCACCCAGATTAGAATGCATATG
ATATTACATAAGCAAGTCGTAGACCGGGGCGAGGAATCTCCCAGACTCGC
ATGACAGGGTGGTGTGGTCACCTTGAAGGTTGCCTACCGTGGCCATCTCG
ACCACCTGCACCACCGGATGCAACCTCGACTCTCCCTGCTACTAGGTCGG
ACATAGTCGTTGCTGTGTTTTTTGTGTCGGCGCTAGTTTCGCTGGGTAAC
ATGGCCGTGATTTGAAGAAAGCTGCCGCAGATTCTGCAGAGAGAGACAGC
TGAGCGGACCACGAACACATTTCTTGCGACAGAGCTGCGACCTGTTTCGA
CCTTGTGACGTGCATTACCCTCTGTTATGTTCGCCTAACGACTTCCCATG
ATGTCCGCTACGTATCTAGCTCCCCAAGGCTCGCTTCATATCTGAATGCT
GCGCTGTGTGTGTTGGCGTGAAAAACGGTTGAAAAAAGCACGTCATGCTG
AATCCGTATCGTAATTTACAATTTACCTCCTCCCTAGGATACAGCACCAA
CACAGCAGTAAGAGAGAACGAGTCAGTTCAACTTGAACATGCTGCTGCTG
CTACGCTGCTGCTTGTTGTCTGCTGCCGTTGCCCTTTGTCGCCAAGAGGG
GATCGCCTCGGGTGCGGTATTTCATCCCTCAAGCAGCACGATTGTTTCTC
AAACAGCAACAGATTGGTCAGCTGTTATTTCCTAACAGCAGCAGGCTTCA
CCATTCTGATATATCATCAGCATGATATCACATCACATCATATGATGATC
ATACGTATATGTACATGTATAGCCACAACAACAGCATAGACACAACACAC
ACCCCCAGCAGCCTTCTCCTCTTTGCCCATCTTGCCACCACCCTCCTGAT
TCCTCGAACATGCCTCTTCCCTTTTCCCGTCGCAGCGCGGAGACGACTCC
TCGATCGATCGAAATGTGCACTCCTTCGGGGAGGAAAGTTATGAACCGCG
GGTCCTTCCGCGTTCCCGACCCCAGCGAGGTGTTGCACACTCGCAGGGGT
GGTTCGATGGATCCGCACACGCGTCTGCCGGGCTACACGTGCTCAACGGT
GTTGGGTGTCACACAGGTCAGGTTATTCCGTCAGGACTCGTATCATTATA
ATAACATCTTTATATATACGAAGTGTGTGCGTGTGTTGTCATCCCAATCA
TTCTGGGCAGCAGTCCACACCTTTCGGTATGAAGTGGGTGCATCAGCCGG
GGTCTCACACAGAAGGAAGGTCACACACGAGCTTTTTTTTCTTTATTTCT
GTTTTCGTTGCCCAAACCTTCCTCCTGCCGTACATGCCTTTGGTTTTTAA
TGCGAGTCGGGTGCAGCAGTCCCTTCCCTCTGTTTACTCACGAGTAACTC
GCTTTGCACTCTGTACTGTCGCAAGAAACGCTCTCAGAGAGAGAATCGAA
CCTACGACCTTACAACTTCGTACACAGTAGTAATTCACTTATGATACCCC
GTATTCACAACGAATGTGGATACCACACCCCCTTGGACATCCTGGAAATG
GCATTTTTGTACCTTTTTTGCTGGCGAGTCAAAGAAAACCAAGAGTGGAA
GGTAACGTCCAGCTAGATACCGGTAGTCGACTCGTATTGTCCTTTGCGCC
CGTTCTTTGATATGATGCACAACGGCATCTACTCCATAGATCCTTCGTCC
AAAGAGAGACCGCAATGATATCTCTGTGTGTGTTGTCATCCCTTTAATTG
GACGCCACTCTGCACCTTTCGGGTAGGTAGACGCTCCAACCGGGGTCACA
CAGTAGGAAGTCAACACAGGAGTTATTTTTTTCTTTTTTCTTTTTTTTTT
TCTTTGTCTTGTCTCCACTTCTCACTGCGGTACTTGCCTTAAGTTTTTAT
CGCGAGAAAGGGTACAGCGATCCCTTTCCCTCGTCGACACTTCGAATTTT
GTTTACTCACGAATGTTTACACACGTATAATACATTCGAAGCATTTTTTT
TTTAATGTTGAAATCAACCCACGCCCGCGCACTGTTTGTAATGTTTTTGA
GCTTACGAAAGCCCGAATCACGCGTGGGATGGCAGACCGTCTTGAAAACG
CCTCTGGCGTTGCCTTCAGCGCTCCAATTCCACTCCCTGTTCCGGTGATA
ACAACCAGCTTGCTTTTGTTTGCAGCTCTCCCCCCCATCAAATGCTTCAT
CAACGGAAAAAAAGCAAAGATTGGGTACCCCGCATCCATCGCCCCTCCCC
TCACTCCCCGCCTGCCCTCTCCCCTTCCTATCGCCACCCCTGAACCAGGT
GTGGTTCGCGGCGCATCACGTGGGCCATGTATTGAAAACGCTGCGATCGG
GGCGACTGGACGAGCTTCACAGGCGAGCAAGCAAGCAAGCGGCAGTATCA
CAACACGGTGTCCGTTCGAGCCAAGCGACCCTACCCTCCCCGCTGTCAAA
AACGTTGAAGCCGTTACGAAGGCTGACACAATTACAGGCGTGGTGTGTAC
CGTGCAACACGCACTCACACACACGCACACACACACAGATGAACGCACAC
ACACACACACACACACACACACACACACAAACATGCGCACCACACACACA
CTTCACAGCCAAAAGCCACTGAAGGAGGAACAAACAGGTCAAACAGGTCG
GCTCGTTCCCGAAGGCGAAGGGCCCCGAAGCAACAACATCGCTTCGGACA
GAAATGGGGAAAAAAATAGAAAAAAAATAGAAAAAAAATAGACAACCACC
CTCCCATCTCACTTTCCTCCCATGTGATTCAGGAGAATGAAGAGAAACCC
ACACGTGCTGGATGCCCGGGTGTGCCGGGCCGTCCTGTGGTGGAGCATTC
TCGGGGAGGCGATGGATGCCGCGAAGGAGGCGGAGCGGCGGCGGGCGAAG
CGGCGAGAGTCCCGCCGGTTGGTTGTGGTTCTGGCCGTTTCGCAGCGGCG
GGGTATTTCTAACAGTTGCAGCAGCCGCAGTAACAGCAGCAGTAGCAATG
CCAGCACCCAGCGAGGTCTTGGTGTTGTCAGCAGTAACACCCAGCTTCGG
CAACCACAGCAACAACACAGACCAACGGAGACGCCCCCTTCAGGGTTGCC
CCGCTTGCCATCCAGGACGTGGTCTCTGCCCCCGTTGACGACGGCAGCAG
CGGCAGCGGCGGCGGTGGCGGCGGCGGCGGCCGCGCCATTGCACGGCGGG
GGGGGGGGAGACCTGCTCAAGGCTTCTAGTGGTGGTGGTGGTGGGGGGGG
GGGGGGTGATGGTGGCCGTGCTCCCTGTCACGGGGGAGAGTCCACGCCGG
CGGCGGCGGTGGTACGGGGGTATCAATCAGTGCACCTCGACGAAGCAGCT
ATTTTGAGCAAGATCTATGATTATTTGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig210:324657..328486+

>mRNA_P-littoralis_Contig210.55.2 ID=mRNA_P-littoralis_Contig210.55.2|Name=mRNA_P-littoralis_Contig210.55.2|organism=Pylaiella littoralis U1_48|type=CDS|length=807bp|location=Sequence derived from alignment at P-littoralis_Contig210:324657..328486+ (Pylaiella littoralis U1_48)
ATGTGTGTTTGTCTCCCGATCCACCGCCATCGTTACCACGGACTCGCCCA
ATCACGCGCGGAGACGACTCCTCGATCGATCGAAATGTGCACTCCTTCGG
GGAGGAAAGTTATGAACCGCGGGTCCTTCCGCGTTCCCGACCCCAGCGAG
GTGTTGCACACTCGCAGGGGTGGTTCGATGGATCCGCACACGCGTCTGCC
GGGCTACACGTGCTCAACGGTGTTGGGTGTCACACAGGTGTGGTTCGCGG
CGCATCACGTGGGCCATGTATTGAAAACGCTGCGATCGGGGCGACTGGAC
GAGCTTCACAGGCGAGCAAGCAAGCAAGCGGCAAGAAACCCACACGTGCT
GGATGCCCGGGTGTGCCGGGCCGTCCTGTGGTGGAGCATTCTCGGGGAGG
CGATGGATGCCGCGAAGGAGGCGGAGCGGCGGCGGGCGAAGCGGCGAGAG
TCCCGCCGGTTGGTTGTGGTTCTGGCCGTTTCGCAGCGGCGGGGTATTTC
TAACAGTTGCAGCAGCCGCAGTAACAGCAGCAGTAGCAATGCCAGCACCC
AGCGAGGTCTTGGTACGCCCCCTTCAGGGTTGCCCCGCTTGCCATCCAGG
ACGTGGTCTCTGCCCCCGTTGACGACGGCAGCAGCGGCAGCGGCGGCGGC
TTCTAGTGGTGGTGGTGGTGGGGGGGGGGGGGGTGATGGTGGCCGTGCTC
CCTGTCACGGGGGAGAGTCCACGCCGGCGGCGGCGGTGGTACGGGGGTAT
CAATCAGTGCACCTCGACGAAGCAGCTATTTTGAGCAAGATCTATGATTA
TTTGTGA
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