mRNA_P-littoralis_Contig205.59.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig205.59.1 vs. uniprot
Match: A0A6H5KC34_9PHAE (TFIIF_beta domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC34_9PHAE) HSP 1 Score: 506 bits (1303), Expect = 1.260e-173 Identity = 257/282 (91.13%), Postives = 272/282 (96.45%), Query Frame = 3
Query: 186 MAWRREQELERVGIDEPEAPRKVPKNEVSLDNANDPCWLVKCTPSVWKAWEGLEEGAKLGELVVKTVKRKKPDGSVVEEQTMQVKPGGLVTHFKGGAKAKLGDYWLSTERNIEDAVAFTRPKTGTTGSTAIVSTIKRQYLMQPEVGPAYTKVVKTRLVANTIKARTTEPVAMSEVYKAARDNMTRKGTAFDSAFHAAQQAKLEAKGEGNKGSREKLEHDELRSRLFGLFAKKDVYMLKELNKELQQSEKYLREMLQEIARMHTSGPHRNCWELKPEFKTSGE 1031
M+WRREQELERVGIDEPEAPRKVPKNEVSLD AND CWLVKCTPSVWKAWEGLEEGAKLGELVVKTVKRKKPDGS+VEEQTMQVKPGG+VTHFKGGAKAKLGDYWLSTERNIED++AFTRPK+GTTG+TAIVSTIKRQYLMQPEVG AYTKVVKTRLVANTIKARTTEPVAMSEV+KAARDNM RKGTAFD+AFHAAQQAKLEAKGEGNKGSREKLE ELRSRLF LFAKK+VYMLKELN+ELQQ+EK+LR+ L EIARMHTSGPHRN WELKPEFKT+GE
Sbjct: 1 MSWRREQELERVGIDEPEAPRKVPKNEVSLDRANDACWLVKCTPSVWKAWEGLEEGAKLGELVVKTVKRKKPDGSIVEEQTMQVKPGGMVTHFKGGAKAKLGDYWLSTERNIEDSLAFTRPKSGTTGTTAIVSTIKRQYLMQPEVGSAYTKVVKTRLVANTIKARTTEPVAMSEVHKAARDNMNRKGTAFDAAFHAAQQAKLEAKGEGNKGSREKLEPGELRSRLFKLFAKKNVYMLKELNRELQQAEKHLRDGLMEIARMHTSGPHRNYWELKPEFKTAGE 282
BLAST of mRNA_P-littoralis_Contig205.59.1 vs. uniprot
Match: D7FLP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLP8_ECTSI) HSP 1 Score: 373 bits (958), Expect = 5.140e-123 Identity = 185/199 (92.96%), Postives = 194/199 (97.49%), Query Frame = 3
Query: 186 MAWRREQELERVGIDEPEAPRKVPKNEVSLDNANDPCWLVKCTPSVWKAWEGLEEGAKLGELVVKTVKRKKPDGSVVEEQTMQVKPGGLVTHFKGGAKAKLGDYWLSTERNIEDAVAFTRPKTGTTGSTAIVSTIKRQYLMQPEVGPAYTKVVKTRLVANTIKARTTEPVAMSEVYKAARDNMTRKGTAFDSAFHAAQQ 782
M+WRREQELERVGIDEPEAPRKVPKNEVSLD AND CWLVKCTPSVWKAWEGLEEGAKLGELVVKTVKRKKPDGS+VEEQTMQVKPGG+VTHFKGGAKAKLGDYWLSTERNIED++AFTRPK+G TG+TAIVSTIKRQYLMQPEVG AYTKVVKTRLVANTIKARTTEPVAMSEV+KAARDNM RKGTAFD+AFHAAQQ
Sbjct: 1 MSWRREQELERVGIDEPEAPRKVPKNEVSLDRANDACWLVKCTPSVWKAWEGLEEGAKLGELVVKTVKRKKPDGSIVEEQTMQVKPGGMVTHFKGGAKAKLGDYWLSTERNIEDSLAFTRPKSGATGTTAIVSTIKRQYLMQPEVGSAYTKVVKTRLVANTIKARTTEPVAMSEVHKAARDNMNRKGTAFDAAFHAAQQ 199
BLAST of mRNA_P-littoralis_Contig205.59.1 vs. uniprot
Match: A0A835YI82_9STRA (Transcription initiation factor IIF, beta subunit-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI82_9STRA) HSP 1 Score: 131 bits (329), Expect = 4.970e-30 Identity = 93/284 (32.75%), Postives = 140/284 (49.30%), Query Frame = 3
Query: 222 GIDEPEAPRKVPKNEVSLDNANDP-------CWLVKCTPSVWKAWEGLEEGAKLGELVVKTVKRKKPDGSVVEEQTMQVKPGGLVTHFKGGAKAKLGDYWLSTERNIEDAVAFTRPKTGTT--GSTAIVSTIKRQYLMQPEVGPAYTKVVKTRLVANTIKARTTEPVAMSEVYKAARDNMTRKGTAFDSAFHAAQQAKLE--------AKGEGNKGSREKLEHDELRSRLFGLFAKKDVYMLKELNKELQQSEKYLREMLQEIARMHTSGPHRNCWELKPEFKT 1022
G +E RKV + + L N WLVK P+V+ AWE ++EG LG LVVK E ++V+ G+ T GG K L DY L R + D + F++ G G ++ +T+ R Y MQP G +Y K+++ R+VA T+K + V R + + FD A ++ + + GE G + K + LR RLF +F +++ + KELN L Q + +L+ +L+EI+ MH SGPHRN +ELK E+KT
Sbjct: 34 GCEEELGDRKVQRTMLDLSNITGEGGSVGRQMWLVKVPPAVYNAWEHVDEGGDLGRLVVKR--------DAAGEDVLEVQMAGITTQVSGGKKVGLPDYTLKGMRQVTDGLVFSQSAAGLRRGGGASMDATVVRSYNMQPISGQSYQKLMQNRMVAATVKQ---DYVRRLGDLPQKRPDGQHERHIFDVAVEEDKRRRADHIGAAVGMGGGESMGGKKIKTDRGVLRGRLFEMFGQQERWAFKELNAHLNQPDDHLKGVLREISEMHRSGPHRNQYELKAEYKT 306
BLAST of mRNA_P-littoralis_Contig205.59.1 vs. uniprot
Match: A0A7S4D8I2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8I2_HETAK) HSP 1 Score: 84.0 bits (206), Expect = 3.780e-14 Identity = 83/282 (29.43%), Postives = 134/282 (47.52%), Query Frame = 3
Query: 237 EAPRKVPKNEVS-LDNA--NDPCWLVKCTPSVWKAWEGLEEGAKLGELVVKTVKRKKPDGSVVEEQTMQVKPGGLVTHFKGGAKAKLGDYWLSTERNIEDAVAFTRPKTGTTGSTAIVSTIKRQYLMQPEVGPAYTKVVKTRLVANTIKARTTEPVAMSEVYKAARDNMTRKGTAFDSAFHAAQQAKLEAKGE---GNKGSREKLEHDELRSRLFGLFAKKDVYMLKELNKELQQSEKYLREMLQEIARMHTSGPHRNCWELKPEFKTSGEAPGGGAEGGDA 1064
E +K+ K+ V LD++ + WLVK V + W+ +G LG L +K V +GS E ++++ L T + G L+ N ++ A+ T+ R + ++P AY K+ ++RL+ RT +P+ SE+ K G +S F + + K + +K + +LE ELRS LF F +K+ + L ELN+ELQQ E++L ++LQEI P R WELKPE++++ A A+G DA
Sbjct: 22 EVVKKLTKDVVKPLDSSKTSKQLWLVKIPAPVAEQWDTARDGELLGSLTLKKV-----EGSNKPEFSIEM--NNLPTKYSLEQMPDAGSKMLAFSHNDDEV--------------AVDGTVTRAFSLRPLRDAAYHKMCRSRLIKALKPKRTIKPLDDSELRKPG------VGAGVNSMFDFSGKGKKRNSADFFGDHKPKKIRLEKAELRSLLFARFGEKEAWTLGELNQELQQPERHLGDLLQEIC----VKPRRGLWELKPEYRSTVAA----ADGDDA 268
BLAST of mRNA_P-littoralis_Contig205.59.1 vs. uniprot
Match: A0A553PLN7_TIGCA (General transcription factor IIF subunit 2 n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553PLN7_TIGCA) HSP 1 Score: 66.6 bits (161), Expect = 3.640e-8 Identity = 78/278 (28.06%), Postives = 114/278 (41.01%), Query Frame = 3
Query: 249 KVPKNEVSLDNANDPCWLVKCTPSVWKAWEGLEEGAKLGELVVKTVKRKKP------DGSVVEEQTMQVKPGGLVTHFKGGAKA--KLGDYWLSTERNIEDAVAFTRPKTGTTGSTAIVSTIKRQYLMQPEVGPAYTKVVKTRLVANTIKART-TEPVAMS---EVYKAARDNMTRKGTAFDSAF--------HAAQQAK-LEAKGEGNKGSREKLEHDELRSRLFGLFAKKDVYMLKELNKELQQSEKYLREMLQEIARMHTSGPHRNCWELKPEFK 1019
K +V L NA WLV + WE E + +G+L + P D SV+ + V GG + KG K K + ++T + AV G+ T T +GP K+ V + R + MS E Y A + TR+ D A HA A L+ K EG K +K +++ LF LF K Y +K+L KE +Q YL+E+L+E+ + PH+N WELKPE++
Sbjct: 28 KKSDKDVDLVNACRGVWLVNVPKYIADRWENCPENSNVGKLKIARRTNATPVVSFSLDDSVIAATPVGVAKGGPSSMSKGSQKEIPKEHKFVVNTLNSQTLAVLSHSSAAGSEALTGPGGT---------PIGPVLDKLAVEGKVVQRAECRPINNHIYMSLKKEAYLKAIEP-TRQTKHLDKAVMAYKPKANHAVNIANDLKKKSEGKKSRDDK---EKVMETLFALFEKHQYYNIKDLVKETRQPVTYLKEILKEVCNYNLKNPHKNMWELKPEYR 292
BLAST of mRNA_P-littoralis_Contig205.59.1 vs. uniprot
Match: UPI00193AB054 (general transcription factor IIF subunit 2-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI00193AB054) HSP 1 Score: 61.2 bits (147), Expect = 1.200e-6 Identity = 69/267 (25.84%), Postives = 114/267 (42.70%), Query Frame = 3
Query: 240 APRKVPKNEVSLDNANDPCWLVKCTPSVWKAWEGLEEGAKLGELVV-KTVKRKKPDGSVVEEQTMQ--VKPGGLVTHFKGGAKAKLGDYWLSTERNIEDAVAFTRPKTGTTGST--AIVSTIKRQYLMQPEVGPAYTKVVKTRLVANTIKARTTEPV--AMSEVYKAARDNMTRKGTAFDSAFHAAQQAKLEAKGEGNKGSREKLEHDELRSRLFGLFAKKDVYMLKELNKELQQSEKYLREMLQEIARMHTSGPHRNCWELKPEFK 1019
A ++ E+ A WLVK + W+ G +G+L + KT+ R + ++ E + + T K + L N AV P G GS AI I ++ P+ G Y K+ T+ V T RT + + A+ VYK A + +A+G+ +GS+E ++ ++LF F K Y +++L K +Q +L+E+L+EI + PH+N WELKPE++
Sbjct: 2 ADKEEDNAELDCTGAKHSVWLVKVPKYLATIWKEAPGGQPVGKLRIGKTMGRTQVSFNLDESLAKEHPTSKDSVPTEHK---------FSLQGMGNQSLAVFSQIPGVGPGGSEKRAIEGRIVQKADCMPQGGQKYMKLKMTQFVVATKPTRTVKQLDTAVRSVYKPVSRIQE----------EIANDKRQKAEGKRIRGSKE-----QVMAKLFEAFEKHQFYSIQDLGKITKQPITFLKEILREIGHYNLKNPHKNMWELKPEYR 244
BLAST of mRNA_P-littoralis_Contig205.59.1 vs. uniprot
Match: A0A6P8IEZ1_ACTTE (General transcription factor IIF subunit 2 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IEZ1_ACTTE) HSP 1 Score: 61.2 bits (147), Expect = 1.270e-6 Identity = 63/263 (23.95%), Postives = 114/263 (43.35%), Query Frame = 3
Query: 261 NEVSLDNANDPCWLVKCTPSVWKAW-EGLEEGAKLGELVVKTVKRKKPDGSVVEEQTMQVKPGGLVTHFKGGAKAKL-GDYWLSTERNIEDAVAFTRPKTGTT-----GSTAIVSTIKRQYLMQPEVGPAYTKVVKTRLVANTIKARTTEPVAMSEVYKAARDNMTRKGTAFDSAFHAAQQAKLEA---KGEGNKGSREKLEHDELRSRLFGLFAKKDVYMLKELNKELQQSEKYLREMLQEIARMHTSGPHRNCWELKPEFK 1019
NEV + WLVK + +W E ++ +G L + +K E T + L + G K K+ DY L + + V F++ TG+ A +++ + + + + P ++ L +I + +P+ ++ K T S++ K+ K + +G R ++ DE++++LF F + Y LK+L Q YL+ +L+EIA +T PH+N WELKPE++
Sbjct: 6 NEVDCTGLSRDVWLVKVPKHLSTSWMENTDKSGIVGSLRISKNTQK-------NEITFNLSES-LASGSDGNEKPKIPSDYKLLMSKVDQSLVVFSQGPTGSADEPDESEPADKVSLEGKVVQRADFRPVHSNAEYLSLKRQSILTAS-KPMRQAKQLK----------TVVTSSYKPVSDHKMNIDYDKKKKEEGKRARIAEDEVKAKLFHAFGQHQYYNLKDLVNITNQPIIYLKSILKEIAHYNTKNPHKNMWELKPEYR 249
BLAST of mRNA_P-littoralis_Contig205.59.1 vs. uniprot
Match: UPI000644FC6C (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644FC6C) HSP 1 Score: 60.5 bits (145), Expect = 1.870e-6 Identity = 62/258 (24.03%), Postives = 111/258 (43.02%), Query Frame = 3
Query: 264 EVSLDNANDPCWLVKCTPSVWKAWEGLEEGAKLGELVVKTVKR-----KKPDGSVVEEQTMQVKPGGLVTHFKGGAKAKLGDYWLSTERNIEDAVAFTRPKTGTTGSTAIVSTIKRQYLMQPEVGPAYTKVVKTRLVANTIKARTTEPVA-MSEVYKAARDNMTRKGTAFDSAFHAAQQAKLEAKGEGNKGSREKLEHDELRSRLFGLFAKKDVYMLKELNKELQQSEKYLREMLQEIARMHTSGPHRNCWELKPEFK 1019
E++ D + WL+K + W G+++G+L K+ + G EE + P K + +E + E+A+AF GS + ++ L Q Y ++++ R K R +P+ S V K N K + ++ ++ E K RE+++ D+L +F F +K + LK+L +Q + +L+++L++I H G HRNC+E+KPEFK
Sbjct: 12 EINTDQVDQQAWLIKIPKYLADHWMNAGGGSEIGKLYFKSANDLSLSIARASGGSSEEFQLTTTPLNEANPLK-----------IFSE-DSENALAFD-------GSIGLRCDVQMDILSQ-----TYRELMQKRNTMANTKTRQLKPLQDQSSVVKMMHQNS--KPQISTAIYNKDKKKSQEEK-------RERMQEDDLTDLIFKAFEEKSYWTLKDLLVYTEQPQVWLKQVLEKICDFHKKGSHRNCYEVKPEFK 236
BLAST of mRNA_P-littoralis_Contig205.59.1 vs. uniprot
Match: C1BZX1_CALCM (General transcription factor IIF subunit 2 n=5 Tax=Caligidae TaxID=72034 RepID=C1BZX1_CALCM) HSP 1 Score: 60.8 bits (146), Expect = 1.980e-6 Identity = 68/267 (25.47%), Postives = 110/267 (41.20%), Query Frame = 3
Query: 243 PRKVPKNEVSLDNANDPCWLVKCTPSVWKAWEGLEEGAKLGELVVKTVKRKKPDGSVVEEQTMQVKPGGLVTHFKGGAKAKLGDYWLSTERNIEDAVAFTRPKTGTTGSTAIVSTIKRQYLMQPEVGPAYTKVVKTRLVANTIKARTTEPVAMSEVYKAARDNMTRKGTAFDSAF--------HAAQQAKLEAKGEGNKGSREKLEHDELRSRLFGLFAKKDVYMLKELNKELQQSEKYLREMLQEIARMHTSGPHRNCWELKPEFK 1019
P K+ ++ +N WLVK + WE + +G+L + R KPD S + +V +G ++K ST + I F + + S + P+ +VVK + I +T V + KA TR+ D A HAA K E K SR+ + +++ RLF LF K Y +K+L +E +Q +L+E+L+ + + PH+N WELKPE++
Sbjct: 5 PAKISDKDLFTENRKRGVWLVKVPKYISDRWEKAPDNEVVGKLRIVKRARAKPDVSFSLDDK-------IVAKREGTPESK-----TSTNQAIPKQHKFIVSNV-MAQTLGVFSRLTSSASEGPDRVSLEGRVVK-KAECRPISDKTYMSVKREAILKAIEP--TRQTVQLDRAVNHYKPISNHAANIEHARRKKEEGKKSRD--DKEKVMERLFALFEKHQYYNIKDLVRETRQPITHLKEVLKGVCNYNLKNPHKNMWELKPEYR 253
BLAST of mRNA_P-littoralis_Contig205.59.1 vs. uniprot
Match: UPI001EB02A8D (general transcription factor IIF subunit 2-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB02A8D) HSP 1 Score: 59.7 bits (143), Expect = 4.180e-6 Identity = 68/266 (25.56%), Postives = 118/266 (44.36%), Query Frame = 3
Query: 264 EVSLDNANDPCWLVKCTPSVWKAWEGLEEGAKLGELVVKTVKRK--KPDGSVVEEQTM-QVKPGGLVTHFKGGAKAKLGDYWLSTERNIEDAVA------FTRPKTGTTGS-----TAIVSTIKRQYLMQPEVGPAYTKVVKTRLVANTIKARTTEPVAMSEVYKAARDNMTRKGTAFDSAFHAAQQAKLEAKGEGNKGSREKLEHDELRSRLFGLFAKKDVYMLKELNKELQQSEKYLREMLQEIARMHTSGPHRNCWELKPEFK 1019
EV L A WLVK + + W+ + G+++G+L + K KPD +TM +V+PG A+A ++ T +++ V F + G T A+ + ++ +P Y K+ + R E + +S V ++ + +A+ S ++ K E+K R +L+ ++++ LF F K Y +K+L K Q YL+E+L+EI + PHRN WELKPE++
Sbjct: 12 EVDLSAAPRGVWLVKVPKYLSERWQKAQGGSEVGKLRITRPKSPGLKPDVMFSSHETMMKVEPGQ--------AQAPRDHKFVLTGVGVQNLVVMSQTPIFAKDGNGATKEKVAERVAVEGKVLQRAECRPIADDNYNKLKRLHWEIQNKPKR--EVIQLSGVVQSYKPR-----SAYAS-LDGDKRKKEESK-------RSRLDREKVQDMLFNAFEKHQYYNVKDLVKITNQPVPYLKEILKEICTYNMKAPHRNMWELKPEYR 254 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig205.59.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig205.59.1 >prot_P-littoralis_Contig205.59.1 ID=prot_P-littoralis_Contig205.59.1|Name=mRNA_P-littoralis_Contig205.59.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=301bp MAWRREQELERVGIDEPEAPRKVPKNEVSLDNANDPCWLVKCTPSVWKAWback to top mRNA from alignment at P-littoralis_Contig205:336294..349671+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig205.59.1 ID=mRNA_P-littoralis_Contig205.59.1|Name=mRNA_P-littoralis_Contig205.59.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=13378bp|location=Sequence derived from alignment at P-littoralis_Contig205:336294..349671+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig205:336294..349671+ >mRNA_P-littoralis_Contig205.59.1 ID=mRNA_P-littoralis_Contig205.59.1|Name=mRNA_P-littoralis_Contig205.59.1|organism=Pylaiella littoralis U1_48|type=CDS|length=903bp|location=Sequence derived from alignment at P-littoralis_Contig205:336294..349671+ (Pylaiella littoralis U1_48)back to top |