mRNA_P-littoralis_Contig197.78.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig197.78.1
Unique NamemRNA_P-littoralis_Contig197.78.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig197.78.1 vs. uniprot
Match: D8LSI3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI3_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 7.910e-17
Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = 2 
Query:  557 GDFVVTASAGDNYEYDRTTSSVPTAFLLERPLVMASSLLDAYPCLRNARLHSMV 718
            G FVVTA+AG  YEYD+ TS+VPTA LLERPLVM+S+LLDAYPCLR +R+HSMV
Sbjct:   69 GHFVVTAAAGHGYEYDKATSTVPTALLLERPLVMSSTLLDAYPCLRKSRVHSMV 122
[Close]
BLAST of mRNA_P-littoralis_Contig197.78.1 vs. uniprot
Match: A0A6H5KJA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA8_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 6.680e-15
Identity = 39/52 (75.00%), Postives = 48/52 (92.31%), Query Frame = 2 
Query:  563 FVVTASAGDNYEYDRTTSSVPTAFLLERPLVMASSLLDAYPCLRNARLHSMV 718
            FVVTA+AG +YEYD+ TS+VPTA LLERPLV++S+LLDAYPCLR +R+HSMV
Sbjct:  162 FVVTAAAGHDYEYDKATSTVPTALLLERPLVISSTLLDAYPCLRKSRVHSMV 213
[Close]
BLAST of mRNA_P-littoralis_Contig197.78.1 vs. uniprot
Match: A0A6H5K2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J8_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.580e-7
Identity = 65/231 (28.14%), Postives = 97/231 (41.99%), Query Frame = 2 
Query: 1070 AVSRRHNSPRA---IDGGTWSDWFDVGQGLRERGALVPVTFK*LFAAMLMVAFDEFPEDEEVMADND*INKGEQGKHVGIHENRRTSQGHEVGDGGEGAER*TGKGRYDVDHLRYALRRRRDIVSSSSRSLETIVVRVAGRFRLTVGAITQGGDHVYAR*RDGGLRFHGQR*RDGAYKSTKRKSFWIWGG*TVRRGASKMRSTHRVQRAHDCFRCDSPAM--KTVGVSRLK 1747
            A+ + H+  RA   +D G  SDWFDVGQGLR+   L P+ F    AAMLM AF E  +D EVMAD   +              R+ ++G              G+    V+ ++   + + + +   ++ +E            T+ A+              G+ F             ++K F   GG   + G+ +    HRVQRAH CFR +S AM  +  G  RLK
Sbjct:    4 AILQFHDGMRACVRMDDGRCSDWFDVGQGLRQGCNLAPLLFNLFIAAMLMAAFAEISKDAEVMADMAKVK-------------RKVTKG-------------KGRNARLVEAVKSIWKPKTETMCMLAKGMEAC--------SFTIDAV--------------GMVF------------KQKKDFVYLGGKICQDGSIEGEINHRVQRAHACFRRNSQAMYDRPGGPLRLK 174
[Close]
BLAST of mRNA_P-littoralis_Contig197.78.1 vs. uniprot
Match: A0A6H5J9P7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9P7_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 3.730e-7
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 2 
Query: 1106 DGGTWSDWFDVGQGLRERGALVPVTFK*LFAAMLMVAFDEFPEDEEVMAD 1255
            D G +S+WFDVGQGLR+   L P+ F   FAAMLMVA  EF +D +V AD
Sbjct:    8 DDGQYSEWFDVGQGLRQGCNLAPLLFNLFFAAMLMVAVAEFDKDPKVTAD 57
[Close]
BLAST of mRNA_P-littoralis_Contig197.78.1 vs. uniprot
Match: A0A6H5JP66_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP66_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 4.220e-7
Identity = 32/60 (53.33%), Postives = 38/60 (63.33%), Query Frame = 2 
Query: 1085 HNSPRA---IDGGTWSDWFDVGQGLRERGALVPVTFK*LFAAMLMVAFDEFPEDEEVMAD 1255
            H   RA    D G +S+WFDVGQGLR+   L P+ F   FAAMLMVA  EF +D +V AD
Sbjct:    9 HEGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNLFFAAMLMVAVAEFDKDPKVTAD 68
[Close]
BLAST of mRNA_P-littoralis_Contig197.78.1 vs. uniprot
Match: A0A6H5JWE4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWE4_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 6.950e-7
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 2 
Query: 1106 DGGTWSDWFDVGQGLRERGALVPVTFK*LFAAMLMVAFDEFPEDEEVMAD 1255
            D G +S+WFDVGQGLR+   L P+ F   FAAMLMVA  EF +D +V AD
Sbjct:    8 DVGQYSEWFDVGQGLRQGCNLAPLLFNLFFAAMLMVAVAEFDKDPKVTAD 57
[Close]
BLAST of mRNA_P-littoralis_Contig197.78.1 vs. uniprot
Match: A0A6H5K388_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K388_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 7.350e-7
Identity = 31/59 (52.54%), Postives = 38/59 (64.41%), Query Frame = 2 
Query: 1085 HNSPRA---IDGGTWSDWFDVGQGLRERGALVPVTFK*LFAAMLMVAFDEFPEDEEVMA 1252
            H   RA    D G +S+WFDVGQGLR+   +VP+ F   FAAMLMVA  EF +D +V A
Sbjct:    9 HEGMRARVRTDDGQYSEWFDVGQGLRQGCNMVPLLFILFFAAMLMVAVAEFDKDPKVTA 67
[Close]
BLAST of mRNA_P-littoralis_Contig197.78.1 vs. uniprot
Match: A0A6H5LQX8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQX8_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.500e-6
Identity = 53/136 (38.97%), Postives = 73/136 (53.68%), Query Frame = 2 
Query: 1106 DGGTWSDWFDVGQGLRERGALVPVTFK*LFAAMLMVAFDEFPEDEEVMADND*INKGEQGKHVGIHENRRTSQGHEVGDGGEGAER*TGKGRYDVDHLRYALRRRRD--IVSSSSRSLE---TIVVRVAGRFRLTV 1498
            D G +S+WFDVGQGLR+   L P+ F   FAA+LMVA  EF +D +V A+   +  G+Q ++ G                G  AE+ T     D + L +A+    D  I+SSS  SLE   +++VRVAG F L V
Sbjct:  281 DDGQYSEWFDVGQGLRQGCNLAPLLFNMFFAAILMVAVGEFDKDPKVTAEM--VKIGKQVEYTGKK--------------GRSAEKKTMMVVTDSEAL-WAMLYVDDAAIISSSPESLEKMMSVIVRVAGLFGLMV 399
[Close]
BLAST of mRNA_P-littoralis_Contig197.78.1 vs. uniprot
Match: A0A6H5K401_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K401_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.530e-6
Identity = 55/146 (37.67%), Postives = 71/146 (48.63%), Query Frame = 2 
Query: 1085 HNSPRA---IDGGTWSDWFDVGQGLRERGALVPVTFK*LFAAMLMVAFDEFPEDEEVMADND*INKGEQGKHVGIHENRRTSQGHEVGDGGEGAER*TGKGRYDVDHLRYALRRRRD--IVSSSSRSLE---TIVVRVAGRFRLTV 1498
            H   RA    D G +S+WFDVGQGLR+   L P+ F   FAAMLMVA  EF +D +V AD   +  G Q ++ G        +   V                D + L +A+    D  IVS S  SLE   +++VRVAG F L V
Sbjct:   59 HKGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNLFFAAMLMVAVAEFDKDPKVTADM--VKIGTQVEYTGKKGRSAGKKTTVV---------------TDAEAL-WAMLYADDAAIVSRSPESLEKMMSVIVRVAGLFGLMV 186
[Close]
BLAST of mRNA_P-littoralis_Contig197.78.1 vs. uniprot
Match: A0A6H5JQR6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQR6_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.050e-6
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 2 
Query: 1106 DGGTWSDWFDVGQGLRERGALVPVTFK*LFAAMLMVAFDEFPEDEEVMADND*INKGEQGKHVGIH 1303
            D G +S WF VGQGLR+R  L P+ F   FAAMLM+A  +F +D +V AD   +  G QG++ G++
Sbjct:    8 DDGQYSQWFHVGQGLRQRCNLAPLLFNLWFAAMLMIAVAKFDKDPKVTADM--VKIGTQGEYTGMN 71
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig197.78.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSI3_ECTSI7.910e-1775.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJA8_9PHAE6.680e-1575.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2J8_9PHAE1.580e-728.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9P7_9PHAE3.730e-758.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JP66_9PHAE4.220e-753.33Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JWE4_9PHAE6.950e-758.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K388_9PHAE7.350e-752.54Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5LQX8_9PHAE1.500e-638.97Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K401_9PHAE1.530e-637.67Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JQR6_9PHAE2.050e-646.97Reverse transcriptase domain-containing protein n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig197contigP-littoralis_Contig197:314005..324043 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2600
Hectar predicted targeting categoryother localisation
Exons7
Cds size510
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig197.78.1prot_P-littoralis_Contig197.78.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig197 318720..323981 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789946.0879343-UTR-P-littoralis_Contig197:314004..3158211680789946.0879343-UTR-P-littoralis_Contig197:314004..315821Pylaiella littoralis U1_48UTRP-littoralis_Contig197 314005..315821 -
1680789946.1059468-UTR-P-littoralis_Contig197:317032..3171001680789946.1059468-UTR-P-littoralis_Contig197:317032..317100Pylaiella littoralis U1_48UTRP-littoralis_Contig197 317033..317100 -
1680789946.1179814-UTR-P-littoralis_Contig197:317989..3180851680789946.1179814-UTR-P-littoralis_Contig197:317989..318085Pylaiella littoralis U1_48UTRP-littoralis_Contig197 317990..318085 -
1680789946.1293378-UTR-P-littoralis_Contig197:318672..3187191680789946.1293378-UTR-P-littoralis_Contig197:318672..318719Pylaiella littoralis U1_48UTRP-littoralis_Contig197 318673..318719 -
1680789946.1778536-UTR-P-littoralis_Contig197:323981..3240431680789946.1778536-UTR-P-littoralis_Contig197:323981..324043Pylaiella littoralis U1_48UTRP-littoralis_Contig197 323982..324043 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789946.1401339-CDS-P-littoralis_Contig197:318719..3187651680789946.1401339-CDS-P-littoralis_Contig197:318719..318765Pylaiella littoralis U1_48CDSP-littoralis_Contig197 318720..318765 -
1680789946.1489015-CDS-P-littoralis_Contig197:321268..3213771680789946.1489015-CDS-P-littoralis_Contig197:321268..321377Pylaiella littoralis U1_48CDSP-littoralis_Contig197 321269..321377 -
1680789946.1579905-CDS-P-littoralis_Contig197:322981..3230511680789946.1579905-CDS-P-littoralis_Contig197:322981..323051Pylaiella littoralis U1_48CDSP-littoralis_Contig197 322982..323051 -
1680789946.1692944-CDS-P-littoralis_Contig197:323696..3239811680789946.1692944-CDS-P-littoralis_Contig197:323696..323981Pylaiella littoralis U1_48CDSP-littoralis_Contig197 323697..323981 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig197.78.1

>prot_P-littoralis_Contig197.78.1 ID=prot_P-littoralis_Contig197.78.1|Name=mRNA_P-littoralis_Contig197.78.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=170bp
MLRLRFPHPGVVYPIVPMGHKRLPRRQSQPRPRPLRGKDSKNDDDDGGGG
GSGGGGGSGGGGGGGGLFHFISPASSPASPRTDVARGRPESFVTQGAMTP
GRRNYGGLFDCLEAMCANGRDDFSLEAMGSTGDVTDLVESHPCTSLRYTE
SRKLEYDEFYARISLGTLS*
back to top

mRNA from alignment at P-littoralis_Contig197:314005..324043-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig197.78.1 ID=mRNA_P-littoralis_Contig197.78.1|Name=mRNA_P-littoralis_Contig197.78.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=10039bp|location=Sequence derived from alignment at P-littoralis_Contig197:314005..324043- (Pylaiella littoralis U1_48)
GTGGCAACACCCCCAGCACCCGTAACGAAGCGCCGCCACCCAAGAACAAA
CAACGACCACACATGCTGAGATTACGCTTTCCGCACCCTGGCGTGGTGTA
CCCCATCGTTCCCATGGGACACAAGAGGCTGCCGAGGCGGCAATCGCAGC
CGCGGCCGCGACCACTACGGGGGAAGGATAGCAAGAACGACGATGACGAC
GGCGGTGGCGGTGGCAGTGGCGGTGGCGGTGGCAGTGGCGGTGGCGGTGG
CGGCGGGGGGCTGTTTCACTTCATCTCGCCGGCCTCTTCGCCCGCCTCGC
CGAGGACCGACGTAGCCAGAGGAAGGCCCGAAAGCTTTGTCACCCAGGTG
TGCACGTGTGCATGAGGCGACACGCACATGCATGCACAAGAACAAGAGCA
CCGTGATAGGCCGCATCGAAATTCTCGAGAGCTTGATCACTTCACACGGC
AGACAGCAGAAAAAAAAAGAAAGACGTAGTGTCTGTCGTGTTGTATTGCC
GAAAATGGCAAGTGGCGCTGGGCCGTTTTGTCTCCCAAAAGCTCGATTAC
TACACCCACAGGAGAGGAGAGTGCTGTATCGAGGAGGAGGGTGATCGGTT
GTGATCGGCGTTGGAATGATCTCGTTGGAACCATATCGTCGGAGCCGTAT
CGTTGGAACCATATGTTGGAACCATAGCGTGGCAGGCGACGTCTGAGCTA
TCTCGTCTGGCACTCGTAGCTTTCCGAATCTGCAAACATCGTTTGATGTT
GGCACCCCCTCGTCCGAATGACGCCACCGGTCGTGCACGCCCACCCCTTT
CGTTTTTATCGCCTCCATTTGTGCCCCTCGTTCGAGAGAGCCAAACTCTG
TTTGATCAAACACCCTTTCACGCACCACGCCGCGATACTGCTGTACACGG
ACAGCTGCACGTCTCGTGTTGCTTGATGTACAATGAATTTGATGGGTAAT
GTTTTCAACATGTCGTGTCCCTGTCAACCGTCCAAAATATAGGGAGCTAT
GACACCCGGGCGGCGAAACTACGGAGGTCTGTTCGACTGCCTCGAGGCAA
TGTGTGCCAACGGTGAGGATAGCCATTGAGGCGCACAAGTACAGAGACAT
ACCGGTGCGTATCATAGTACGAAGTACATACGAAAAGACGTATGATATGA
TACGACTAGGTACGTTCATTCGTTCATATCATACATTTATACAATCCTGC
ATACATACACAAATACATTCATACATGCAATCATCCGCACACATACATGC
GTACATACACACATACGTGCATAGAGATAAATACGTACCGTAAGCTCGTA
CATGACATCGCTCATCATGCTTTCAACTGTGGATTGTTCTCTTCAATCCG
GTGGACCAAGGTGACACCCAGTCTTGGTTTGGTGAAGCAAGCGCGTTGGC
CTGAAGGATGCTTTCATTTGCTGCTCAATCACGTGTACAATAATAAAGCC
AGCCCCCCGCTCCGCCCCGGCCCGCTTTCGGGGAGTATCTTTTTCTCGTC
CGCCGAACCCCTTCTTGCTCTCGTCTGTGGCACGAAATATACGAAGGATT
TGATGCCGCTGTCGTCAGCGGTTTATCCCAATATGTGTGGGAGAGCACAA
CAACATCAGAAAAGCGAGCTGGTCGGGTGGTGGTTTGGATGATGGACGCA
TGTGGGGCCTGTTCTTTGGGCAGAAGTACTCTGTAGGAGGAGCCAAAACA
TCGCCACCGAATAGTAAACACAACGCCTCGACATGACCAAGTACTTTTCG
CGTGCGGAAACATATTGCAAATAGAAAAGGCGACAAGCATCTATTCAGCA
GCACCGAACACACACAAGCCGGGGTGTGTGAAGGAATTGCGCGACCCTTC
CTGTGTTCTGCGCTTATTTCATCTCTGGTTTAGGTGTTGGGAACAGATTT
AATGGATATGTTTACACCTTCAAGGTTAATACACCCCTTTTTTTGTCTGT
TTGATATTTTCATGTTTGTTTGTTTGTATGTTTGTTTGTTTGTTTATGTT
TTCTTCGATTCTGTCTGGATGCGTTTGTTCGGACTTGTTTCCTTGTTTGC
GTTCCCTTTGGCTTGCTTCGAAACACACAGATTAATTTTCTGGCCGGGGA
TAATGTACCATGCGCGCCCAGAATACGGCGAGTGTTTTGCTACTCCGGGG
TGTAGTGAGCTACTCCGTCTACGCCCGCGTCCGTATGCTTCGAAACACAC
AGATTAATTTTCTGGCCGGGGATAATGTACCATGCGCGCCCAGAATACGG
CGAGTGTTTTGCTACTCCGGGGTGTAGTGAGCTACTCCGTCTACGCCCGC
GTCCGTATGCTTCGAAACACACAGATTAATTTTCTGGCCGGGGATAATGT
ACCATACGCGCCCAGAATACGGCGAGTGTTTTGCTACTCCGGGGTGTAGT
GAGCTACTCCGTCTACGCCCGCGTCCGTAAACATTTGTTTTTCGCCCTTT
GCCGCGGTTCGTTTCACGAGCGCTGCTGTATGATGCGTTTTTCATGTGTT
TTGCTAGTTGTCCACACGCGTTTTGCTTGACTTGTTTCACCGATGATACT
GCTTGCTCTAGATCTTGTCTTACCCGCTAGACACTATTAACTTCGTGCTG
GGGTCCTTGTTGCACGCATACACCGATGATTGAGGATGCGTTTTGCTTCT
TTTGCTCGTCAATCAGGGAGGGACGACTTCTCGCTCGAAGCGATGGGCTC
CACCGGCGACGTCACCGACTTGGTCGAGTCGCACCCTTGCACATCTCTAC
GCTACACGGAAAGCCGCAAGCTTGAGTGAGTGAGCAGTACGTTCAAGTTG
CAGCAGCACCACAAGAAACGGAACATGGTTTCACAAACAGCTGTTTATTT
CAAGCCATGATTTATGTTCCCGATGTGTATAGTAGAGTTTACCTTTTTTT
GTGGAATCCGGATCGAAACACCGTCTGTCAAGTGGAGTTCGCGTAGTTCG
ACCGCATTGTTTCGTTATTCTCCCATGTGTGTGAGTAGGCCTGCAGCATC
CAAAACGATACATCGTCAAAGTGGTTCAGTCGTTTTGCCGCATTTTTAAT
TATTGCTCCACGTGAGATGTGAGTGCGAGACCGCACGTTATGGCAGCGAA
ATATTTTTCTTAATCTTCCCGAACCCCCCTCCACCCCAACATTCAGCTTG
CCAAACTAAAAAAATATTTCAAATCTGTCTGCGCTTATGGTCCAGGACTC
TATATTATGTTGGTGTTGTGGAACTGGGGGGGGGGGTGGTAGGGGTGGCC
CATCTCATTGCACTCTGGTGACATAATCACACATTACACAAGAAACACCG
AACTTGGCGCGCCCATCGAGGGCTCGGAGCAACCCTAGGTGCATCGTCTT
GCCAACCTGGCCGGTGGCCGGTGGCCGGTGGCGGTCGTTCTTCAGACGTG
CAAAAAATATACTGGTACGTAGTATATTGGACCACAGGCCTGAAGCTGGA
AAATATGTCAAACAGCAGTTCTGAGGCCCACAGAGCAAAATTGACAGCTT
TTCAACATACACCAGAGCACACCACACTCGATTCCTCGCTCCATCGAGCA
CGTCTCAAGCTGAAACTTGGCAGGATGGGATCAACACTCGCTGCTTACCG
CCAGCAAGGCGTTGCTTGGCGGTGGGGTCATTCAATCAGCAAGGAGTAGC
AGCGCTCGAGGGTGTGAGCTTAAATAATGAACGGAATCTGTCTGTTGTTT
CTCTTGGAAATAGACAACTCTCTGTGCCACCTTGAAATTCATTTTCCGAA
CAGACGTTCTATACACAGCGCTGCTCCTTGCTGATTGAATGACTCCACCG
CCAAGCCATCGCCCTGCTGGCGGTAAGCAGTGAGTGTAGATACCATCCTT
CCAAGTTTCAGCTTCATACGTGCTGGATTGAGCGAAAAATTGAATGTGGT
GTGCTCGGGAGTCTGTTGAAAAACTGTCACTTTTGCTTTGCGGGCCTCAA
AACTGCTGTTTGACATCTCCCGCTTCAAGTCTGTGGTCTTTTTTTGTTTT
CGCTTTGCACACCTGAAGAACGACCGCCACCGGCCAGCGGCCAGGTTGGC
AAGGCAATGCACGTAGGATTGCTCCGAGCCCTCGATGAGCGCAGTATACG
TTCGGTATTTCTTGTGCTGTCTGTAATTGTGTCTCCAGAAGCATGTGTGG
TGTGTGCATGCCTGCGGAGAGGCACAATCGACCCCCCCCCCTTCGGACAA
GATGTCGAGGAGGTGTGGCTCGCCCGAATGTATAGGGCCCGACTTTCCCA
AAAATCTAGCCTCTCGATCTCAACCCTTGAAAAATTTGGAAGATTCCAAG
GCATATTTTTGCCCGCAGAAACGATGTATTTTGGGATCTTTTCTTGAATC
GGCCCCCGCCCCCCACCCAAAAGTCAAGCTTAAGAAAAATACTCGGCTTC
CATAACGTGCGGTCTGAGTAGGTCTACAGCATCAGAAATGAAACAAATAC
TCCGTATAACAGATGGCCCGCAATTTTCCATTATTATCGCTGTATCTTGT
GAGAGACGGGCCGCGAAATCTTTGCCTGTCCGGAGGTAGTTTTTGTGTTG
GCTGTGAACGAGTTCCAGCTATCATGTACACACAGGCCAGGCCAGGCCGC
AATTTTGTTTTCAAGTAGATTGGTGGGCGAGCGACAGCTCAGCAGCATCG
TGCTGTTCCCCGCTATGACAGACTTACGTATTTGAAGTATCTCGAGCGAT
TTGCGATAGTCAGGCCACAGCGAAGTAGCGTTTGAAGAAAACTTCAGCCT
TTGCCCGTAAGGCTCGGGGATAACTCGAAGGCCTTGGGCTTCTGGTGAAC
GGTTATTAAAAGGGTTTAGAATTAAATTTTAAGTTTAAGGGGTACAACAG
GAGACACCCTGGGTCCCCTCGAAAGATGTACGGCTGTAAACTGCCGGTAT
ATTTTCGTTTCAGTAGCTTTTAGTGTCAGGGGTGGAACGCATTGGGGTAT
AAGGGGCAGAGTTGGTGTTGGGCTTTTGGGGCCGAAGTCTTGCTTGGGTG
CTGTCCCGCCACACGGACACTGTCCGTAGCAACGGTGCGTTGTGTACTTT
TCTGCAGGAATGGCGATGTTCATAGCAACAGTAAAAAAACACGATGATGA
TGCAAGTTAGTAAAGTAGTGGTTTGCCGTCTTGTTTGTTGAATGTCGTCA
TGCTTCCAGAAAAGGAAATGTTCTACTTTTCGGCTGTAAGCGGTTTGGAG
TTGACTTGGTTTACGCCCGTTGCTGCTGCTGCTGCTGCTGTTGCTGTTCT
CTGCCGGACGCATCCCCCGCACGCGGAGGTACGATGAGTTCTATGCAAGA
ATAAGCCTGGGGACTTTGTCGTGACGGCTTCCGCGGGCGACAATTACGAG
TACGACCGCACCACATCCTCAGTGAGTCGTATCAAACATTAAGAAACAGA
GAAGCACGAGAGAGAGAGGGGTGAAGAGCATTTTTGTTGGAGCGCCGTTT
CTACGTCCTCCGAAAAGGCGTGCAACCAAATAATCGTATGTTTGAGGACA
GGTTGTAGATGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCGCTCTCTTTGGTCTTAAAACCGGCAGGACTGGATCCTGCT
CACAGAGGTCAGTTGCTCCAAGTTTTTGCATTTTTTTTTGTCTCGCGACC
AATAGCGACCGCGCGCTGCGTGTTATTCTTGTAGCTTTATCAACAATAGT
CTAATCAATACAAATCATACATGAAATGTATTTCAACACGCACGCGCAGA
AGATCTCCGACCTCTGCGTGTCTTGCGTGTTTTTCGTTTTCTCGTATGCA
CGCGCCGCCTCGTTCTGTTCCTCCCTACTGGACGCACAAACACGCGCACG
CTATCGTACACGCACGCACACACGCACGCACGCTCGTGCACGTGGTTGTT
TTTGGCAGGTGCCGACAGCCTTTCTACTAGAGAGGCCACTCGTGATGGCT
TCTAGTCTGCTGGACGCCTACCCGTGCCTTCGGAACGCCCGCCTTCACAG
CATGGTGGGTCAGTGAGCGAGTGCGCGGTGTGGTCCCCAACAATCTTTAT
ACCGGGTCGGGTAGACACCCACTCTCCACGCCTTTACTCTCCTCTCCCCC
GCCGCTGGTTGGTTTCCATCACGACAGACTTTTGTCACAACAAGCATTGC
ACAAGTATTGTTTTTCAAATATACACTGTATCAAGTGCATACTCTAATCT
TGTTGTTGTTATCTCCGGGACATGTTCCGCTAGAAAGGGAATCGTGCCCG
AATATCAGTACCAGCCAGACGAGGGGCGCCGTGCCATTCGCAGCATAGTC
TCTTCAAGAAGAACATACCCTGCTGTGCACTCCAAGAGCACTGCTGTCAG
TACCTGTGCGCGTGCTGGGCATCCTTTCGAAGACACTTGAGCTCGGTCGT
GAAGCCGTTCAGGTGCATGACTGGTCGGTGGCCGGAAGTGCCTGGAGTTT
TCGCCCCTCTACTATTTCCTGTCAGAAATGTGTATAAGTGAATTGATGTC
ACACGCCAACGGGGAAACAAACTGGTAAAATATAGCAGGAGCCGACTTCA
GTCGTCCCTGCGTTCCGAGCGGGGTAGCGCGGGGCGCCCCGTGACATAAC
ACCAGACAGACACCATGTAACCCGAAAACTTGTATATACACTTCGTACAT
AGTAAGCCTGCAGGAGGGGGGGGGGCAGCGGTACCGGGGGGCGGGGACTG
ATCGAGGTATGAATGATGGTGGTGACGGCATGCAGCTCTTGTGAAGGTTT
AGGTGTGTACATGATATGCAGAAACGGTTTGATGATGGTATAAGTACCGT
CGGTTTGTTCTCGCCATGTATCTTATGAAAGCATTTCTCGAATTATGCTT
CTATCAAAAAGCTTAACTTCTTGCTGTGTTTTTCTCCGCGCAGGTGCAAA
CGACAACCTGTGCGTGAGCCTTCAGGCCGCTTACGACCTCACGCCATAGG
AATACAACGAGGTAACAAACGTATCCACACGCGTAAACCATGGCACGGAA
CCCCCTTCTTTCAGAAGCTTTTCCGCTGGGTTGAGGGCGAGGGGCAGCGA
ATTTTTCTCATCATGTCGAACAATCTTACCTCTCCCGCTATCATTGGTCG
GGGAGGGCTCACACGTTCCTCTTGTTGCGCAATTGGGCGTGGAAAAGCTC
TCCCGGTGTATGATATGAAACTTCCACGCAAAGGCGAGAGTACTGGTAAT
GTGCACATATAGAAGATTTATGATTTGTAAAGTGCCCTCGCTGGTGCGAG
TATCGACCCTCCTCAGGCGCGCAGGTAAATAAACTGTGTTTGAATTTTTT
AAAAACGTACGTGCGTTATATGCTGTATGAATGGATGTATGGGTGGATGA
TTGGATGGATGGGTGAATTTGTATGTATATGTGATTTTGGTTTGACGAAA
GGCCGGGGGAGCAGGGGAATCGGCGCACATACAACATGTCGTGGTTTTTA
GCTGCTTCCCTATGGTGGTGGTGTGTGCTAAAAACTTAATCATGTCGCCG
GGTATGGTCTCTCAGATACTCCCGACGGCTCCAACCCTGACCATGGACGG
TGCGCGATTAACCCCGCCTCCCTACGGGTGTATATCCTGCGGAGTTCCAT
CCCTCTTGCTGCCAGACACGTGTATCATTCATTGTTTTAAGATCAAGTCT
TTCTCGCTTGGCACCTGGTTTCGTGCGGTGACGGTTTCCTCTCTTTTTCA
CATTCCTTTTTGCTCCGACCTAGTCGAGGACATGATTCAAAGGGCCTAAT
TGGGAGGGTGGAATCCAAATGAGCCTGGGGCCACCTTCAGGCTATGACAT
ATGTATGGACAGTCCTCGTTTCACGTAGTGGTCAATTACGTCATAGACGA
AGCATTAATACAGAGATCCGTCCACCGAGGCATCCGTTCCGGGATACGAT
TCACATGTTTGGTATGTAGTTCAGCGACCTGAGTAGTAGTACTGCTGGTG
GGCCTTGTTTCTTCGCGATTGGAGGTGTGTCCGTGCTACACACATGTGAT
ACACACATACATATGATACAATAATACGACTATCACGTCATCTCCCAAAC
GTTTGCTTGATTGGGAACTATCCCATCCCCTCGCCTCCCCTCCCCTCATG
GCCGTCACCCCCTCCCCACCGACACTTTTGCACCATCCCGCCCGTGTTGT
GCCGTTGTATGCGACACGGAAGATGGAGCTCAAAGCGCGGGACTGCAAGC
TGCAATTGTGGAGACAGACCCGCGAAACGGTCACCAACATTGTTCGGGGT
AGGTAGTCAATAGGAGACTACCCGTAGAGGTGGTGCTCTTGAGATGTTCC
AAGAATACGTCTGCACGAGCTCGCCGGGAGAAGTCGACCCCACTCTGAGC
CTGCTATGCCGATTTCACGAGAGCCCACGATTCCGTGTGTAGGGGGCTAC
TGTGGCTATTGCTCCAGCAGCTCGGGGTGCCCCCCACGATGCTTGCGATT
ATCCGCCGGCAGTTTCACGACGGCATAATAGCCCGCGTGCGATAGACGGT
GGAACGTGGTCCGACTGGTTCGACGTGGGGCAGGGACTCCGGGAGAGAGG
CGCCCTGGTACCAGTGACATTCAAATGATTATTTGCTGCAATGCTCATGG
TCGCCTTCGACGAGTTCCCTGAAGACGAGGAAGTGATGGCGGACAATGAT
TAAATTAATAAAGGTGAACAAGGGAAACATGTCGGAATACATGAAAATAG
GCGAACAAGTCAAGGTCACGAGGTCGGCGACGGGGGGGAAGGAGCAGAAC
GCTAAACTGGCAAAGGCCGGTATGATGTAGACCATTTGAGGTATGCTCTG
CGCCGACGACGCGATATTGTCTCCTCATCGTCGAGAAGCCTCGAGACGAT
CGTCGTGCGCGTCGCCGGGCGGTTTCGACTGACTGTTGGTGCCATTACCC
AAGGCGGAGATCATGTGTATGCTCGCTAAAGGGATGGAGGCTTGCGTTTT
CACGGTCAACGCTGACGGGATGGTGCATATAAATCAACCAAACGGAAAAG
TTTTTGGATCTGGGGGGGATAAACTGTGAGGAGGGGAGCGTCGAAAATGA
GATCAACCCACCGAGTACAGCGAGCGCACGACTGCTTCCGGTGCGACAGT
CCGGCAATGAAGACCGTCGGAGTGTCCCGCTTGAAGCAACTCAAGCTGCG
GGGCGGTGGCGTTAAAAAAACTGAAGGGCATAAATACCGGAATGGTGTTG
CTGCGAGAGATGGAAGGCAAAAGCAACAGCAGTGCGCGGTGGTACGAGTC
ACAGGAGGCATAAGCGCGTGGGAGGACAGCAAGCGTGAGTAGGCAGACCT
TGTCGCGAGACACGTTCGCGACTGATCGCGTATGTGTACAACGGTACACC
CACCTATTCACCTTTTTATTCTACGTTCTTGTCTACTTCGTATTTTTTCT
TTACGATTCCTCCTTTCCCTCCTTTTTCTCGTACTCTTTATTTTTCTTGT
TCTTCTTTTCCTTTTTCTTTTTCCCTTCTCTCATTCTCGGACCGACGTCT
TCAATTTGGACCTTTTTGCCCTCTTCGGCTGTGTCTCACCTTTTTCGAGT
CTGTATCTCTTGCATGTTGAGGATTTCGGCCATGACCCAGAAGATATCTC
TTGGTGTTAGGCGGTATCTATACTGTTGTACCTGGTTTTTCGTCATTTGG
GCATACCGGTATATGTTGGCCTTTTTTACATTCCATCTTGTACTTGGAAG
TACATTTTTATTTCCTTCCTCCTAGCACGAAAACGATGCACGTACATAAA
ATATAATTGCCTGGTGTTGCGACTACGGGGGACACACGATAGCGGCGAGC
TACGGCAATGTGAAAATCAACATCAGCGACAACGTCTTACCCGGAGATTA
TTTCGCTTCGTACGTACCGGTAGAAGAACCCATCTGATTTTCTTTACTAC
CACCAGTATGCATGATGGACATAGCAGCAGGGAAGACGCGAAGGAAGCAA
AACAGAATCGAGGGGAACCTACACTGCTGTACTTCCTGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig197:314005..324043-

>mRNA_P-littoralis_Contig197.78.1 ID=mRNA_P-littoralis_Contig197.78.1|Name=mRNA_P-littoralis_Contig197.78.1|organism=Pylaiella littoralis U1_48|type=CDS|length=510bp|location=Sequence derived from alignment at P-littoralis_Contig197:314005..324043- (Pylaiella littoralis U1_48)
ATGCTGAGATTACGCTTTCCGCACCCTGGCGTGGTGTACCCCATCGTTCC
CATGGGACACAAGAGGCTGCCGAGGCGGCAATCGCAGCCGCGGCCGCGAC
CACTACGGGGGAAGGATAGCAAGAACGACGATGACGACGGCGGTGGCGGT
GGCAGTGGCGGTGGCGGTGGCAGTGGCGGTGGCGGTGGCGGCGGGGGGCT
GTTTCACTTCATCTCGCCGGCCTCTTCGCCCGCCTCGCCGAGGACCGACG
TAGCCAGAGGAAGGCCCGAAAGCTTTGTCACCCAGGGAGCTATGACACCC
GGGCGGCGAAACTACGGAGGTCTGTTCGACTGCCTCGAGGCAATGTGTGC
CAACGGGAGGGACGACTTCTCGCTCGAAGCGATGGGCTCCACCGGCGACG
TCACCGACTTGGTCGAGTCGCACCCTTGCACATCTCTACGCTACACGGAA
AGCCGCAAGCTTGAGTACGATGAGTTCTATGCAAGAATAAGCCTGGGGAC
TTTGTCGTGA
back to top