mRNA_P-littoralis_Contig178.77.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig178.77.1 vs. uniprot
Match: A0A6H5KFX8_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX8_9PHAE) HSP 1 Score: 102 bits (255), Expect = 1.130e-21 Identity = 67/182 (36.81%), Postives = 94/182 (51.65%), Query Frame = 3
Query: 201 TAQRIRREFGSAVAYNATVLASYSEEVEDVLRGLVSS-QPLINLCHAQAGTELVDLEVTTGR---TREDLSMYARTSLRAFVDLLEGSDVVIEHVVRVSYKLTATAASNVVVLGAGGVYLCSCLQLLQHGFPCRHVFAVMQ--LQGPALLSTCCTFDANCVHPRWRNIRSLQDEKWTASELV 728
T Q +RRE G + +Y+ + V G +S + +NL +D GR + D SM+ARTSL F+ L + DV + V YKLT S+++V G G +LCSCL+LLQHG PCRH FAV+ + L + TF+A CVH RWR + DE W+ S ++
Sbjct: 32 TNQDVRRELGGSQSYDVERIVDRQPAQHPVKVGQISDLRERLNLLQPPPPATDLDEGCENGREGGSLVDTSMWARTSLEDFLSLTQ--DVPTSAIFAVRYKLTPNRPSHLMVFGPGDFHLCSCLRLLQHGLPCRHYFAVLLSFIGEKDLPGSGHTFNAACVHNRWRQAPDVDDEPWSVSLVL 211
BLAST of mRNA_P-littoralis_Contig178.77.1 vs. uniprot
Match: A0A6H5KAB1_9PHAE (SWIM-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAB1_9PHAE) HSP 1 Score: 102 bits (254), Expect = 4.200e-21 Identity = 66/177 (37.29%), Postives = 93/177 (52.54%), Query Frame = 3
Query: 201 TAQRIRREFGSAVAYNATVLASYSEEVEDVLRGLVSS-QPLINLCHAQAGTELVDLEVTTGR---TREDLSMYARTSLRAFVDLLEGSDVVIEHVVRVSYKLTATAASNVVVLGAGGVYLCSCLQLLQHGFPCRHVFAVMQ--LQGPALLSTCCTFDANCVHPRWRNIRSLQDEKWT 713
T Q +RRE G + +Y+ + + V G +S+ + +NL +D GR + D SM+ARTSL F+ L + DV + V YKLT S+++V G G +LCSCL+LLQHG PCRH FAV+ + L + TF+A CVH RWR + DE W+
Sbjct: 418 TNQDVRRELGGSQSYDVEPIVDRQPAQDPVKVGQISALRNRLNLLQPPPPATDLDEGCENGREGGSLVDTSMWARTSLEDFLSLTQ--DVPTSAIFAVRYKLTPNRPSHLMVFGPGDFHLCSCLRLLQHGLPCRHYFAVLLSFIGEKDLPGSGHTFNAACVHNRWRQASDVDDEPWS 592
BLAST of mRNA_P-littoralis_Contig178.77.1 vs. uniprot
Match: A0A6H5JP13_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP13_9PHAE) HSP 1 Score: 101 bits (252), Expect = 8.350e-21 Identity = 65/178 (36.52%), Postives = 93/178 (52.25%), Query Frame = 3
Query: 213 IRREFGSAVAYNATVLASYSEEVEDVLRGLVSS-QPLINLCHAQAGTELVDLEVTTGR---TREDLSMYARTSLRAFVDLLEGSDVVIEHVVRVSYKLTATAASNVVVLGAGGVYLCSCLQLLQHGFPCRHVFAVMQ--LQGPALLSTCCTFDANCVHPRWRNIRSLQDEKWTASELV 728
+RRE G + +Y+ + + V G +S + +NL +D GR + D SM+ARTSL F+ L + DV + V YKLT S+++V G G +LCSCL+LLQHG PCRH FAV+ + L + TF+A CVH RWR + DE W+ S ++
Sbjct: 399 VRRELGGSQSYDVERIVDRQPAQDPVKVGQISDFRERLNLLQPPPPATDLDEGCENGREGGSLVDTSMWARTSLEDFLSLTQ--DVPTSAIFAVRYKLTPNRPSHLMVFGPGDFHLCSCLRLLQHGLPCRHYFAVLLSFIGEKDLPGSGHTFNAACVHNRWRQAPDVDDEPWSVSLVL 574
BLAST of mRNA_P-littoralis_Contig178.77.1 vs. uniprot
Match: A0A6H5KBY4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBY4_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 2.990e-18 Identity = 56/122 (45.90%), Postives = 71/122 (58.20%), Query Frame = 3
Query: 378 GRTREDLSMYARTSLRAFVDLLEGSDVVIEHVVRVSYKLTATAASNVVVLGAGGVYLCSCLQLLQHGFPCRHVFAVM-QLQGPA----LLSTCCTFDANCVHPRWRNIRSLQDEKWTASELV 728
G D +M+ARTSL AF+DL+E D+ IE VV V YK TA S++VV G +LCSCLQLL+ PCRH FAV+ L G ++ TF+ CVH RWR D WT S ++
Sbjct: 916 GEAAVDNTMWARTSLSAFLDLIE--DIPIELVVAVRYKWTANRPSHLVVFGPHNFHLCSCLQLLRRRLPCRHYFAVLVNLIGRTGESDEMAFTHTFNGACVHNRWRRREDGNDSSWTISSVL 1035
BLAST of mRNA_P-littoralis_Contig178.77.1 vs. uniprot
Match: A0A6H5L372_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L372_9PHAE) HSP 1 Score: 92.8 bits (229), Expect = 6.620e-18 Identity = 54/122 (44.26%), Postives = 71/122 (58.20%), Query Frame = 3
Query: 378 GRTREDLSMYARTSLRAFVDLLEGSDVVIEHVVRVSYKLTATAASNVVVLGAGGVYLCSCLQLLQHGFPCRHVFAVM-QLQGPA----LLSTCCTFDANCVHPRWRNIRSLQDEKWTASELV 728
G D +M+ARTSL AF+DL+E D+ IE V V YK A S++VV G +LCSCLQLL+ G PCRH FAV+ L G ++ TF+ CVH RWR + D W+ S ++
Sbjct: 229 GEAAVDNTMWARTSLSAFLDLIE--DIPIELFVAVRYKRAANRPSHLVVFGLHNFHLCSCLQLLRRGLPCRHYFAVLVNLIGRTGESDEMAFTHTFNGACVHNRWRRREVVNDSPWSISSVL 348
BLAST of mRNA_P-littoralis_Contig178.77.1 vs. uniprot
Match: A0A6H5KB76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB76_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 1.810e-17 Identity = 68/207 (32.85%), Postives = 103/207 (49.76%), Query Frame = 3
Query: 129 IILETFFSVSLTTSSSRHDPCIFPTAQRIRREFGSA--VAYNATVLASYSEEVEDVLRGLVSSQPLINLCHAQAGTELVDLEVTTGRTREDLSMYARTSLRAFVDLLEGSDVVIEHVVRVSYKLTATAASNVVVLGAGGVYLCSCLQLLQHGFPCRHVFAVM-QLQGPA----LLSTCCTFDANCVHPRWRNIRSLQDEKWTASELV 728
+I+ + S + + H C AQ E S+ V N L + ++ + S + +N+ H ++ + G D +M+ART L AF+DL+E D+ IE VV V YK TA S++VV G +LCSCLQLL+ G PCR FAV+ L G ++ TF+ +CVH RWR + +D W+ S ++
Sbjct: 425 LIVRSMGSPATSQQDDCHKDCEVDEAQSYDAELVSSGRVEENGDPLPLHEHDLAKIR----SLRLKLNILHVAPPDTDLEGDQLAGEAAVDNTMWARTLLSAFLDLIE--DIPIELVVAVRYKWTANRPSHLVVFGHHNFHLCSCLQLLRCGLPCRDYFAVLVNLIGRTGESDEMAFTHTFNGSCVHNRWRRRKDGKDLPWSISSVL 625
BLAST of mRNA_P-littoralis_Contig178.77.1 vs. uniprot
Match: A0A6H5KG54_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG54_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 5.810e-17 Identity = 49/110 (44.55%), Postives = 66/110 (60.00%), Query Frame = 3
Query: 405 YARTSLRAFVDLLEGSDVVIEHVVRVSYKLTATAASNVVVLGAGGVYLCSCLQLLQHGFPCRHVFAVMQ--LQGPALLSTCCTFDANCVHPRWRNIRSLQDEKWTASELV 728
+ARTSL F+ L + DV + V YKLT S+++V G G +LCSCL+LLQHG PCRH FAV+ + L + TF+A CVH RWR + DE W+ S ++
Sbjct: 658 WARTSLEDFLSLTQ--DVPTSAIFAVRYKLTPNRPSHLMVFGPGDFHLCSCLRLLQHGLPCRHYFAVLLSFIGDKYLPGSGHTFNAACVHNRWRQAPDVDDEPWSVSLVL 765
BLAST of mRNA_P-littoralis_Contig178.77.1 vs. uniprot
Match: A0A6H5K9T1_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9T1_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 2.860e-16 Identity = 53/122 (43.44%), Postives = 68/122 (55.74%), Query Frame = 3
Query: 378 GRTREDLSMYARTSLRAFVDLLEGSDVVIEHVVRVSYKLTATAASNVVVLGAGGVYLCSCLQLLQHGFPCRHVFAVM-QLQGPA----LLSTCCTFDANCVHPRWRNIRSLQDEKWTASELV 728
G D +M+AR SL AF+DL+E D+ I+ VV V Y A S++VV G +LCSCLQLL+ G PCRH FAV+ L G ++ TF CVH RWR D W+ S L+
Sbjct: 1139 GEAAVDNTMWARASLSAFLDLIE--DIPIQLVVAVRYMRAANRPSHLVVFGPHNFHLCSCLQLLRRGLPCRHYFAVLVNLIGRTGESDEMAFIHTFKGACVHNRWRRREDGNDSPWSISSLL 1258
BLAST of mRNA_P-littoralis_Contig178.77.1 vs. uniprot
Match: A0A6H5KKN6_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN6_9PHAE) HSP 1 Score: 73.6 bits (179), Expect = 1.990e-11 Identity = 57/139 (41.01%), Postives = 76/139 (54.68%), Query Frame = 3
Query: 216 RREFGSAVAYNATVLASYS-EEVEDVL----RGLVSSQPL-INLCHAQAGTELVDLE--VTTGRTREDLSMYARTSLRAFVDLLEGSDVVIEHVVRVSYKLTATAASNVVVLGAGGVYLCSCLQLLQHGFPCRHVFAVM 608
+R G A +Y+A +++S EE D L L + L + L Q DLE G D +M+A TSL A +DL+E D+ IE VV V YK T S++VV G ++LCSCLQLL+ G PCRH FAV+
Sbjct: 203 QRTEGEAQSYDAELVSSGRVEENGDPLPLYEHDLAKIRSLCLKLNILQVAPPDTDLEGDQLAGEAAVDNTMWAPTSLSASLDLIE--DIPIELVVAVRYKWTPNRPSHLVVFGPHNLHLCSCLQLLRRGLPCRHYFAVL 339
BLAST of mRNA_P-littoralis_Contig178.77.1 vs. uniprot
Match: A0A6H5KWM8_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWM8_9PHAE) HSP 1 Score: 73.9 bits (180), Expect = 2.320e-11 Identity = 49/118 (41.53%), Postives = 65/118 (55.08%), Query Frame = 3
Query: 390 EDLSMYARTSLRAFVDLLEGSDVVIEHVVRVSYKLTATAASNVVVLGAGGVYLCSCLQLLQHGFPCRHVFAVM-QLQGPA----LLSTCCTFDANCVHPRWRNIRSLQDEKWTASELV 728
ED +M+A TSL AF++L+ G IE V V YK +A S++V G +L SCLQLL+ G PCRH FAV+ L G S FD +CVH RWR + W+ S ++
Sbjct: 535 EDNTMWACTSLLAFLELVAGFP--IELVAAVRYKYSANNPSHLVAFGPHNFHLRSCLQLLRRGLPCRHYFAVLANLIGRTGESDEWSFTHAFDGSCVHNRWRQSDDGKVLPWSVSFVL 650 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig178.77.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig178.77.1 >prot_P-littoralis_Contig178.77.1 ID=prot_P-littoralis_Contig178.77.1|Name=mRNA_P-littoralis_Contig178.77.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=121bp MYARTSLRAFVDLLEGSDVVIEHVVRVSYKLTATAASNVVVLGAGGVYLCback to top mRNA from alignment at P-littoralis_Contig178:401632..402395- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig178.77.1 ID=mRNA_P-littoralis_Contig178.77.1|Name=mRNA_P-littoralis_Contig178.77.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=764bp|location=Sequence derived from alignment at P-littoralis_Contig178:401632..402395- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig178:401632..402395- >mRNA_P-littoralis_Contig178.77.1 ID=mRNA_P-littoralis_Contig178.77.1|Name=mRNA_P-littoralis_Contig178.77.1|organism=Pylaiella littoralis U1_48|type=CDS|length=363bp|location=Sequence derived from alignment at P-littoralis_Contig178:401632..402395- (Pylaiella littoralis U1_48)back to top |