mRNA_P-littoralis_Contig173.78.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig173.78.1
Unique NamemRNA_P-littoralis_Contig173.78.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig173.78.1 vs. uniprot
Match: A0A6H5K3H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 8.430e-42
Identity = 74/138 (53.62%), Postives = 93/138 (67.39%), Query Frame = 1 
Query:  481 QVNDMMAHLDVGGLVLDCCGSTRDAVCRLLTERGFRVQTNDINSRLPAGTHLDASGADFV*AYGQGDNRPDWVVASPPYKNAFAILKQALHVAQVGVVFKLRLLFLEPPKTRRQWLKDNPPSLTLVLPRAAYRGRKCN 894
            +V+ ++ ++ + G VLD CGS  DA+  +L      V TND N RL A THLDA+  +F   +     RPDW+V SPPY NAF+IL +AL V +VGV FKLRL FLEP KTR +WLKDNPPS  +VLPRA Y GR C+
Sbjct:   14 KVDALLLNVKLAGGVLDACGSASDAIKVVLEAHSLNVSTNDFNPRLTADTHLDATSEEFTAMFSTEGQRPDWIVTSPPYGNAFSILVRALGVVRVGVAFKLRLSFLEPTKTRGKWLKDNPPSAVVVLPRATYCGRVCS 151
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BLAST of mRNA_P-littoralis_Contig173.78.1 vs. uniprot
Match: A0A6H5JUK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK3_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 5.440e-29
Identity = 93/256 (36.33%), Postives = 121/256 (47.27%), Query Frame = 1 
Query:  172 CCACRHPGPSDKSTRRAWRHIGAGECWYSLVEWEATAAGTWPHRRDLLQEPLQANECICSRVDCVSGLYSK--FRKQRAAAAGESSSF-------------VETGHRALLGRYPSLPQQVNDMMAHLDVGGLVLDCCGSTRDAVCRLLTERGFR----VQTNDINSRLPAGTHLDASGADFV*AYGQGD--NRPDWVVASPPYKNAFAILKQALHVAQVGVVFKLRLLFLEPPKTRRQWLKDNPPSLTLVLPRAAY 876
            C AC   G   + TR        GE   S V+ EA  A  +P  + +          +C R  C+  LY K  + + R   A ++                V    R  L RY +LP+ V  +   + + G VLD CG   DAV +     GFR    V TND++SRL AGT+LDAS   F   + + +   +PDWVV SPPYK A   +K AL VA  GV  KL L FLEP   R  WL DNPP++ + L RA Y
Sbjct:   25 CSACLEWGQDFRHTRAR-----TGELVRSFVD-EAGIADKFPGFQSIAAGTNLL--ALCKRAGCLLELYQKQEWARSRERVARKAKQMPRHSRMWSAAPEPVTHDKRRRLDRYCTLPEAVEVLQNAVAIAGCVLDMCGGPEDAVAQ-----GFRSTCEVLTNDVSSRLSAGTNLDASLLSFRDNFRKANPGKQPDWVVTSPPYKGAVGFVKAALAVATKGVALKLPLSFLEPCADRGGWLVDNPPAVCIFLRRAKY 267
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BLAST of mRNA_P-littoralis_Contig173.78.1 vs. uniprot
Match: A0A6H5K266_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K266_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 9.940e-10
Identity = 52/147 (35.37%), Postives = 65/147 (44.22%), Query Frame = 1 
Query:  343 ICSRVDCVSGLYSK----------FRKQRAAAAGE-----SSSFVETGHRALLGRYPSLPQQVNDMMAHLDVGGLVLDCCGSTRDAVCRLLTERGFRVQTNDINSRLPAGT------HLDASGADFV*AYGQGD--NRPDWVVASPP 714
            +C R  C+  LY K           RK +   A       S   V    R LL R  +    V  ++  +D+ G VLD CG   DAV RLL      + TNDI+ RL  G+      HLDAS   F  A+ +     RPDWVV SPP
Sbjct:   28 LCQRAGCLLNLYDKRMRVLSKERIARKLKLVPAARTKWTGSPEPVRQLQRRLLDRCCTSDAAVEVLLRAVDISGRVLDMCGGPCDAVARLLGAT-CELITNDISGRLSPGSKKAPDMHLDASATTFCAAFLENSIQQRPDWVVKSPP 173
[Close]
BLAST of mRNA_P-littoralis_Contig173.78.1 vs. uniprot
Match: A0A6H5JUT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT6_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 3.670e-6
Identity = 41/120 (34.17%), Postives = 56/120 (46.67%), Query Frame = 1 
Query:  343 ICSRVDCVSGLYSK--FRKQRAAAAGESSSF-------------VETGHRALLGRYPSLPQQVNDMMAHLDVGGLVLDCCGSTRDAVCRLLTERGFR----VQTNDINSRLPAGTHLDAS 645
            +C R  C+  LY K  + + R   A ++                V       L RY +LP+ V  +   + + G VLD CG   DAV +     GFR    V TND++SRL AGT+LDAS
Sbjct:   40 LCKRAGCLLELYQKQEWARSRERVARKAKQMPRHSRMWSAAPEPVTHDKCRRLDRYCTLPEAVEVLQNAVAIAGCVLDMCGGPEDAVAQ-----GFRSTCEVLTNDVSSRLSAGTNLDAS 154
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig173.78.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K3H5_9PHAE8.430e-4253.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUK3_9PHAE5.440e-2936.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K266_9PHAE9.940e-1035.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUT6_9PHAE3.670e-634.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig173contigP-littoralis_Contig173:428568..430955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1093
Hectar predicted targeting categoryother localisation
Exons4
Cds size570
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig173.78.1prot_P-littoralis_Contig173.78.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig173 429057..430525 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789834.8539686-UTR-P-littoralis_Contig173:428567..4286341680789834.8539686-UTR-P-littoralis_Contig173:428567..428634Pylaiella littoralis U1_48UTRP-littoralis_Contig173 428568..428634 +
1680789834.8649921-UTR-P-littoralis_Contig173:429030..4290561680789834.8649921-UTR-P-littoralis_Contig173:429030..429056Pylaiella littoralis U1_48UTRP-littoralis_Contig173 429031..429056 +
1680789834.9231708-UTR-P-littoralis_Contig173:430525..4309551680789834.9231708-UTR-P-littoralis_Contig173:430525..430955Pylaiella littoralis U1_48UTRP-littoralis_Contig173 430526..430955 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789834.8746045-CDS-P-littoralis_Contig173:429056..4294461680789834.8746045-CDS-P-littoralis_Contig173:429056..429446Pylaiella littoralis U1_48CDSP-littoralis_Contig173 429057..429446 +
1680789834.891008-CDS-P-littoralis_Contig173:429920..4300511680789834.891008-CDS-P-littoralis_Contig173:429920..430051Pylaiella littoralis U1_48CDSP-littoralis_Contig173 429921..430051 +
1680789834.9120662-CDS-P-littoralis_Contig173:430476..4305251680789834.9120662-CDS-P-littoralis_Contig173:430476..430525Pylaiella littoralis U1_48CDSP-littoralis_Contig173 430477..430525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig173.78.1

>prot_P-littoralis_Contig173.78.1 ID=prot_P-littoralis_Contig173.78.1|Name=mRNA_P-littoralis_Contig173.78.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=190bp
MSASGRRGACGRSDHGLPSEDGTANLCCACRHPGPSDKSTRRAWRHIGAG
ECWYSLVEWEATAAGTWPHRRDLLQEPLQANECICSRVDCVSGLYSKFRK
QRAAAAGESSSFVETGHRALLGRYPSLPQQVNDMMAHLDVGGLVLDCCGS
TRDAVCRLLTERGFRVQTNDINSRLPAGTHLDASGADFV*
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mRNA from alignment at P-littoralis_Contig173:428568..430955+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig173.78.1 ID=mRNA_P-littoralis_Contig173.78.1|Name=mRNA_P-littoralis_Contig173.78.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2388bp|location=Sequence derived from alignment at P-littoralis_Contig173:428568..430955+ (Pylaiella littoralis U1_48)
GCTTGTGCTCTGTTCTACCGGCACGAGTACTGCATTCGACGCCCGGCTAC
GACTGCCACGGCATAAGGTGTGTACGTAAGGTGTGCAACAGCAGCTTTCA
CACCAATCGCGCCACGGGCGAGTCCAGTAGGCGAAGGCAAAGTGTACGAC
GGTCCCAGCTGCCGTGACTGCTGTACCTTACAGATTCTCTTCGAGTGCTC
CGCACTCAAAGGCAGCTCTAATCTCTGACAGTAAGAGTTTGGGTTTGAAC
GGGCCATCGTTCGTCAGCTAACAACATGGCCGGCAGTTGGGTTGGGTGTG
GGGTGAGGATTATTGTCTCCTAACGCCCATAACAACACTCTGAAATACTC
GCTCCCGCCCTCTCTTTCGCTGTATTTCGCCGGAACTCCGCCTTCTTCCA
CTCCCGTTTTTTTTGGTTTTGCTTGTCCTGGTTTCTGTTCAACTGTCAAC
AACTGCTGCTCAGCACAACCAAACGCAACGTCCACGGCCATGAGCGCGAG
CGGGAGGCGAGGTGCGTGTGGAAGGTCCGATCACGGCCTCCCGAGCGAAG
ACGGGACCGCAAACTTGTGCTGCGCCTGTAGGCACCCTGGCCCCAGCGAC
AAGTCAACTAGGCGAGCTTGGCGACACATTGGAGCCGGAGAGTGTTGGTA
TTCTCTTGTAGAATGGGAAGCTACGGCGGCCGGCACGTGGCCCCACCGGC
GAGACTTGCTGCAAGAGCCTCTTCAGGCGAATGAGTGCATATGCTCGCGG
GTTGATTGTGTTAGTGGACTGTACTCCAAGTTTCGGAAGCAACGTGCTGC
AGCGGCCGGGGAAAGCTCGTCGTTTGTGGAGACCGGACACAGGGCCCTTC
TTGGGCGGTATCCGTCGCTTCCTCAGCAGGTGATCATTATCCTGTGTGCA
TGTGACTGCTGTTAGAAAAAGTGTGACAGTGCAGACTTCTGTAAACTGCT
GTAGACTGCGGTAGGGGAAGGGTGGCGATGTAGGCTGCGGCATACTACTG
TAGGGGAGTGGGTGACGAAGAATGTTGCTGCCGGCTGATATAGAAAATCG
GGTGACCAGAATGACTGCTGTACGAGAGCGGAGAGCTGTATCTCGACCTT
TATTTTCAGACGGTCGGCACCTGAAGTGGTCAGGTTAGCCCTTCTACAAT
ATATTCGCCGGAAAAAAAAGCAGCCAAGTGTGTGTACACTAATCTGTGTT
TTTTTTTGCACTCGTCTTGATTTAATCGTGGACAACGCGAGAGCACAAGC
AAGCCTTTGGGGCTACTCGGCTGTGTATGGATCGTTCTGTGGATGTATGT
CAACAATTTCGAAATGATACTGAAACGAACATCGGCATGCCTTCTTGGGA
CAGGTGAACGACATGATGGCCCACTTGGACGTCGGTGGTCTTGTTCTTGA
CTGCTGCGGGAGCACGAGAGATGCCGTGTGTCGGCTGCTGACAGAAAGAG
GCTTTCGTGTTCAGACGAACGACATCAACAGCAGGCAAGCGAGACAGACA
ATTGCATGTAGGGGAGTACTAAATACGTTCAACGGCAGCGCAAACCAATT
ATCCAATGCCGCTCTCTCGTCCACGTGCTCCACGTAATGGTGTCATGTAT
CGCAAGGGCGGAATGATAAAAATAGGCGAAATAAATATTTTGCCTCCTGA
AGAATAACACTGCTTTTCCTCAACGTTGGCGTTTCTTGATTTTCGTTAGG
CGACCCAAAATGCCCTGATGTTTGAGCCGACAAATCTCGGAAGAAGGCTT
TTCAGGTCATCGCCTGCGGAGGCTAAGCCTTTCTGAAAGGGGTGGTAATC
ATGGTGTACACGATACCAAATTCGCCACAGGCTCACAAATATTCGCATAC
ACTATCCACGTTCGTTCTGTCGCCTACGCGTGCATGCCTGTTTTGTTCCC
GCACGACAGACTGCCAGCGGGCACACACCTCGATGCCTCGGGCGCAGATT
TTGTGTAGGCGTACGGGCAGGGAGATAATCGCCCCGACTGGGTCGTCGCG
AGCCCTCCATACAAAAATGCCTTCGCCATCCTGAAGCAGGCACTGCATGT
AGCTCAAGTCGGCGTTGTTTTCAAGCTCAGGCTGTTGTTCCTCGAGCCTC
CTAAAACTCGCCGACAGTGGTTGAAAGACAACCCACCTTCTCTCACGTTA
GTTCTGCCACGCGCAGCTTACCGGGGTAGGAAATGTAATCCCGGAGGCAT
GGTTCATGTGGTACACAGGTGAAAAGGCTCATTGTCCTATTGCACAGCAG
GTGGTGTTTGCCGTCTGAGCCTCTCACGATGAATCTGTTGCGTCAGGTAC
CGACGAACGCGTGTGACGAACGACCATTCTTTGGTCGGATTGTACTCGCG
CCGTAAAGAGGGAGCCTTCCCCTGGTTTAATCTCCCCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig173:428568..430955+

>mRNA_P-littoralis_Contig173.78.1 ID=mRNA_P-littoralis_Contig173.78.1|Name=mRNA_P-littoralis_Contig173.78.1|organism=Pylaiella littoralis U1_48|type=CDS|length=570bp|location=Sequence derived from alignment at P-littoralis_Contig173:428568..430955+ (Pylaiella littoralis U1_48)
ATGAGCGCGAGCGGGAGGCGAGGTGCGTGTGGAAGGTCCGATCACGGCCT
CCCGAGCGAAGACGGGACCGCAAACTTGTGCTGCGCCTGTAGGCACCCTG
GCCCCAGCGACAAGTCAACTAGGCGAGCTTGGCGACACATTGGAGCCGGA
GAGTGTTGGTATTCTCTTGTAGAATGGGAAGCTACGGCGGCCGGCACGTG
GCCCCACCGGCGAGACTTGCTGCAAGAGCCTCTTCAGGCGAATGAGTGCA
TATGCTCGCGGGTTGATTGTGTTAGTGGACTGTACTCCAAGTTTCGGAAG
CAACGTGCTGCAGCGGCCGGGGAAAGCTCGTCGTTTGTGGAGACCGGACA
CAGGGCCCTTCTTGGGCGGTATCCGTCGCTTCCTCAGCAGGTGAACGACA
TGATGGCCCACTTGGACGTCGGTGGTCTTGTTCTTGACTGCTGCGGGAGC
ACGAGAGATGCCGTGTGTCGGCTGCTGACAGAAAGAGGCTTTCGTGTTCA
GACGAACGACATCAACAGCAGACTGCCAGCGGGCACACACCTCGATGCCT
CGGGCGCAGATTTTGTGTAG
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