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Homology
BLAST of mRNA_P-littoralis_Contig172.55.1 vs. uniprot
Match: A0A6H5K312_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K312_9PHAE) HSP 1 Score: 146 bits (369), Expect = 3.960e-34 Identity = 86/160 (53.75%), Postives = 95/160 (59.38%), Query Frame = 3
Query: 219 PPSEEAGPTRGRGARGAAAAAFANSNRTVASAGVPFPGSVDLRCFTREGIRELHVCLFPRVTDVENTGTRERDGMAGTSAEGARLVVA*TFGSQDRGTNKVYLSNWQTREAARAQGGLGPWLKERYGVENAVRELAVLMACRCFADKNQSQTITWYLSTI 698
P E+ GPTRG G G A AFA+S RTVAS GVP PGSV F GT+ +DG GTS EG RLV A TFGS GTNKVY W T + ARA G GPWL+E GVE+AVREL+V MACRCF KNQSQTI YLS +
Sbjct: 260 PRCEKGGPTRGGGELGTGANAFADSRRTVASVGVPLPGSVAPAVFY---------------------GTQGKDGRGGTSVEGERLVNALTFGSLGSGTNKVYQRMWNTWKEARAGAGSGPWLRESDGVESAVRELSVFMACRCFGHKNQSQTIRGYLSAV 398
BLAST of mRNA_P-littoralis_Contig172.55.1 vs. uniprot
Match: A0A6H5JX40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX40_9PHAE) HSP 1 Score: 119 bits (299), Expect = 8.350e-28 Identity = 64/103 (62.14%), Postives = 72/103 (69.90%), Query Frame = 3
Query: 417 TGTRERDGMAGTSAEGARLVVA*TFGSQDRGTNKVYLSNWQTREAARAQGGLGPWLKERYGVENAVRELAVLMACRCFADKNQSQTITWYLSTIT--RKISLG 719
+GT+ +DG GTSAEG RLV A TFGS GTNKVY W T + ARA G GPWL+E GVE+AVREL+V MACRCF KNQSQTI YLS I RK+ G
Sbjct: 15 SGTQGKDGRGGTSAEGERLVNALTFGSLGSGTNKVYQRMWNTWKEARAGAGSGPWLRESDGVESAVRELSVFMACRCFGHKNQSQTIRRYLSAIKYFRKMHAG 117
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 1528 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Cds size | 444 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680789832.9139743-UTR-P-littoralis_Contig172:337145..338188 | 1680789832.9139743-UTR-P-littoralis_Contig172:337145..338188 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig172 337146..338188 - |
| 1680789832.989751-UTR-P-littoralis_Contig172:345089..345130 | 1680789832.989751-UTR-P-littoralis_Contig172:345089..345130 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig172 345090..345130 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680789832.9586477-CDS-P-littoralis_Contig172:338188..338317 | 1680789832.9586477-CDS-P-littoralis_Contig172:338188..338317 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig172 338189..338317 - |
| 1680789832.970279-CDS-P-littoralis_Contig172:342640..342913 | 1680789832.970279-CDS-P-littoralis_Contig172:342640..342913 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig172 342641..342913 - |
| 1680789832.9793584-CDS-P-littoralis_Contig172:345047..345089 | 1680789832.9793584-CDS-P-littoralis_Contig172:345047..345089 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig172 345048..345089 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig172.55.1 >prot_P-littoralis_Contig172.55.1 ID=prot_P-littoralis_Contig172.55.1|Name=mRNA_P-littoralis_Contig172.55.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=148bp
MDSDATEVVVLLRKARRRLLSHRGPTSYPYWVIATAGAEEAEGEEIAEGA VEQILGGAGPPSEEAGPTRGRGARGAAAAAFANSNRTVASAGVPFPGSVD LRCFTREGIRELHVCLFPRVTDVENTGTRERDGMAGTSAEGARLVVA* back to topmRNA from alignment at P-littoralis_Contig172:337146..345130- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig172.55.1 ID=mRNA_P-littoralis_Contig172.55.1|Name=mRNA_P-littoralis_Contig172.55.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7985bp|location=Sequence derived from alignment at P-littoralis_Contig172:337146..345130- (Pylaiella littoralis U1_48) ACATCGACACCCAAGTGAACGGCCCCACAACGGAGTCCAGCATGGACAGC
GACGCCACGGAGGTGGTCGTGCTACTCCGGAAGGTGCTCGCCCTGTGGCC
CAAAAAGTATTAAAGGTTCTTCGAGTTTTCGTTGCGATGGCAGCAAAGAG
AGAGGAAGACACCCCCCAACAACAACAACACCGCGAAGGATATTCCTGTC
GCCGTCCGGAGGCCCGATAGTGCCGCCCAGAGATGTTGCATTTACCGTTA
TTCTAGAAGCTGCCCGCGCGTTGTGTTTGTTGTGTTGCAGTCGACAGGAC
ATACACTAGGCAAGTGTTGTTTAAGAAACCAAGTTGTTTTCAAACCAAGC
TGTTTTATTTAGAACATACCGAGAAAGATCCGGTCTGGTCTGGTATGGTC
TGGCCCACTGTGTGGTCATTATTGTATTCTGAGGACACTGCCGAGCTAAG
AAAATACAGGCTGGGCGAATGAAGGCGATTCCTACATGTACCCTGCTTGT
ACAACTCTGTACCGCCGTACCTCGTTATCAAAGTCCGTGAGCCAGGCGTG
GTTAGTACGTAGTGTGCGGGGTGGGGGCGTGGGGGTGGAAGGGTGAGGGT
TCTATGTCGTTCGCGGGGGCGTTTGATTTTGATCCCTGTAGTCAAACGAG
AAACGCCGAAGGGGCCGGTCCAGTCCCAAGGACGTTTTTCTGGTCATTTT
TGAAGATGTTTTCAGAAGTCGACCTTCTCGCGTAGTGCCTATATGCACGG
CTGAAAAAAGTGAAAGTCACCACGTAGTCGTTGCCTGCGTGTCGGCACGC
TCAGATCTGCCGCTGAGGTCGAGATGTCGGAGGAGGAAATGATGGTTCAG
GCAGCCCGAAAATCGTCCGCGTTTCAGCCCAATCCCATCATCTTGCACTG
CCGTTATAGCCGTTATGGGTCTCAATCTCCTGAATCATGGATCGTGCGAG
GCAGCTAGCGGTAGAGCTACTGCTGCAGACCAGCAGGTAGGACATTGGGG
CCCATGGCGAATACAGCAGTGGAGGATGGCATGTTTCGGGCTGAGATGTG
GACGGGTTCTAGACTGCTGTATTCACCACACATCTTGGACCACTGACAAC
TCGGCCCCAGAAGCAGATCTGAGCATGCCAACACGCACGTCACTGCCATA
TATATGATGTTGTCCCCGTTTTTCATACTTTCGATTAGGCACCACTCTAC
CGCATTTCTCATGTTAGCGCCCTCTCTTAATCGCTGTTATGTCTTCGTAT
TGGAGTCAGTTGTTTGCGAGAATATTGCGGAGTTCGAAAGCGAAACATGC
TTGTCACGAGGACGCCTCGAGCGCCGCCTTCCACGCATTTATTCCGGCTC
CCAACCCGCTTATTTTGACCTGATAACCCTGTTACTACGTGGTGTTCGAG
TATTTTTTCGATATGCCGACTTCGAAAATTCGATGTTTTTTCGCGCATGT
ACCGGTCGCCCCGGAGGTTCAGTGGATTATCCTCGAAATATTCTGACACT
TGCGCTTGAGTTCGAATTCCGGTGCAGTAACACGATCCGGAATTCTTCTC
ATGTCATGCGTGAGGGTGGAAAACGATCAATTCGTGAGTAAAAAAATTCG
GAGTGTCGACGAAGGAAAGAGATGGCTGTACCCTTTCTCGCGATAAAAAA
TTAAGACAAGTGCCGCAGTGGGAAGTGGAGAAATAAAAAAAAAAAAAAAA
ACTCCTGTGTTGACTTCCCCCTGTGTTACCCGAAATATCCAATTAAAGGG
ATGACAACACATGCACATACTGCTGTACAATAAAATAATGAGGAATGGCC
ACGGGTATACCCGATACCTTTGTGGCCATAACCGGGTACCTCTCTTTTTA
AGTGAACGAAACCGCCCAAGGACGCCATCTAATTGGCCAAAACCCTCCCC
TACCCGCCGATGGGCACGTTCCCGCCAGGTACGGGAAGATTCGGTACGTT
CTTGAATCTGTGGTTTTTGGAGACGGTTCGGAATTCGGAAAAGCAGGGAT
CAGGGGATCAGGGAAGTCCAGAGTTGGGCACAAAGTCTTCGGTGCTCGGG
TGGCGAGGCATAAGAGAAGCAAACGCGTTTTTCAGAGAAGGGTTGGCTCC
GGAGTAAGTAGCAGCAGCTCGAGAGGCTGCAGAGAGAAGTGACACTTAGG
ACTTGATCGATTGTCCCCCCCCCACCCCCTCTTCCCCCTCTCGCCGCCTC
GGCTGCACGTACCGCAGGCGCGGCGGCGGCTCCTGTCTCACAGGGGGCCC
ACCAGTTACCCCTACTGGGTTATAGCAACGGCGGGGGCAGAGGAGGCGGA
GGGAGAGGAGATTGCGGAGGGCGCAGTGGAGCAAATACTTGGAGGCGCGG
GCCCCCCCTCTGAGGAGGCGGGACCGACAAGGGGCAGGGGCGCGCGCGGA
GCAGCAGCGGCAGCCTTTGCAAATAGCAATAGGACCGTAGCAAGTGCTGG
AGTTCCCTTTCCCGGGTCGGTGGATCTGCGGTGTTTTACGGTGAGAGCAG
GACTACTGTTTCGAATTCGCATCTGACCATTAACTGTCTTGATTCCAACA
CACGTAAAACAGTGGTGGACACCACGTGTAGGAAAAGTTTACACACAGTA
CGGAGGGCGGACACCTGTCGGGTAAATAGGAGGTCAGGCGTCACGCAAAC
GGCGGACACTGTGCGCACGAGAGCAAAACGAAAACCTGTATCATCGGAAG
AAAATAATACCGTACAAAAATGTATACTCGGGGCGGACACGCCCGGTATA
AATTACCCAGCATGGGATTCCGCCACCAAAATGGCGGACACCGTGCGAGT
GATGGAAAACAAGAAGTACCGAATGTTGGTGGACACCAATTATGAAAAAA
ATACGACACCGGGAGAGCACACCCCCAGTGTAACAAACCCAGAACACGCA
AGCCACGCAGAACATCGGGGGCGGACACCCTTCGTAAGAATACACAAGAT
ATAATATTGGCAGACGCCGATACCGTGGGAATTTTTGCGCTCGGGGCGGA
CACCCACAGAGTACAAACACCACAGCATGCAACTAGGGCGGACACCCTGC
ATGAGGACGATTCCCAAAAATTGGCGGACACCAATACCGTGGAAAATTGT
GCAATGTTGGTGGACCCCAACACTGATAAAAATCGGACACCGGGGGCGAA
CACCCTCAGTAAGAAAACACAAGAAAAAATATTGGCGGACACCAATACCG
TGGGAAATTTTGCGCTCGGGGCGGACACTCACAGAGTACAAACACCACAC
CATGCAATCAGGGCGGACACCCTGCATGAGAACGATTCCAACACACACAA
ATAAATTGGCGGACACCTTTTGTGTGGGAGGAGGGATAAGTGACACCAGG
TTGGCGAACACCAACTTAAGGCGCTCACATTCACGCGGGGCGGACACCCT
GCGCGGGAAAAGCATTACTAGTGACACGACAATGGCGGACACCGTTGGGG
TGGGAAGGAAAAACTACACAACTCTGGCGGACACCAGTAATGTGCAGACA
GCCACCTCAAGGGCTGACACCCTAGAGATGCAAACGGCAGACACACACAC
ACAAACGGCGGACACCGTGCGTGGGCAACACTCTGAAAAACAAGTACACT
TGACGGACACCAATGCTTTGCGAGTAGACATAAGCGGGACGGACACCCCG
CTCGCGAAATACTCGTTTGACATCAGTCACGCGGCGGACTCCGCAATTAC
AAGGACCAAGACGAATGTTGGGTCAGGCGGTAGCGGATCGGCGGCGAAGC
CGCCTCCTGATGGAGGAAGGACCAAACGTCAAAGCCCAAAGACTCAAAAG
AAAATAGCATGCATACGAAACAAGGTAATCTCACAGCAAGTCTAGAGGCG
CAGAGACTCAGCCTTGCGGACAGCACGCTAACCTTGGTCGAAACAATTCG
CATAATTCGTAATATGGCAGGCATTAGTAGCACAATGGTAAAGCTGCACG
ATGGTAGTCTGCGAGATGTCGCGAGGGGAATCGGCGGCACCTTGGTGTCA
CCGCCTCTGGACGTGAGCGACGTTGAACAGTACTTTGGTACAGAAAAAGG
TTTTCCCGGCATCGCGGACCTCACCAAAATCGTGGGCGAAGGAGCGCCAG
CCCCCACCATCAATTCAGACTCCCGCCTCGACAGCGCACTGGTTTACGGG
AACCACCGAAGCATAGAAAATTATCAGACTGAAGTGTGGGAGAAACTCTG
TAATGATGTGAGGAGGAACAGGTGCATAGTGCTGGAAAAAAGGTAGCAGC
AGATGTAGCAGGCATTCAGGTAGCGCCCTTGGGAGCGGTCCCAGGGAAGG
GGTTGAAAGGGGGGCTGAACAAAGATTCGGATCCCACCGCGGTATCCCGG
TGTCTGTGTGGGGAAGCGTTGCCGCACCTTTTCGCGGAGCTCGCGAGTCT
GCGGACGAGGTGGCCGGACAAAAGGATCCTCGTCGCAAAGGCTGATGTGT
CGTTAGCTTTTAGAAACGTCAGAGTCGCTCCCGACCACGCGCACAAATTC
TGATATGTGATAGATGATATTCTGGTGGCCGACATCATCTAACCTTCGCG
TGGGCAACATCCCCCGGGCTGTGGGGGGTGTTGGCTTCAGCTGTCGATCA
CGCCCACCGTCACACGTCTCTCTCGAACGTCCGTCTCTTACCAGAGGGAG
CGGCTACGATGTCCCACGTAAAAATAACTCCACCTTGGGAAGTCGGGGTG
CCAACAAGAGTCCCTGAAGCAGCGAATGTGAAGCCTCGTGTGGGAGGTGG
AATGATGAACGATTTCTGTGCACAGGTGTACGTAGACGACTTTCTGCTCA
CGAAGGTCCAGCACGACCCCTCAGACCAGTCTGCCCTGGTGGTGTCGGCA
TCTCTCGCGTCTGATCACATTCGTCTCTTTGGCCCGGGGGAAACGTGGGA
GATTGCTATCCTCGCGCCCACGAAGAGCACGAATTAGGACACGACTATAG
AGGCTGTAGGATGTACTGTGGACACGCATGAGGGGAGAACCTCGGCCACC
CCAGAAGGGCTGAGCGCGATTTGAACCCTGTTGCAAGAAGAGTGGCCTGA
TGGCCGAAAGCAGGCGAGCGTGCAAGACGTGCTCAGTCTAGCTGGAAAAC
TATGGAACCTCCCTTACGTGATCCGGGCAGATAGGTACTTCGTCTGGTCA
TTACTCCGATTAACTGGACTGCACACACAATCCAGTCGTCAAACTCGAGC
ACGGCGTGTGGTGGATCTTGGTAGGGAGTTCCATGGCGACGTGGCCTATT
GGAAGTGGGTCTTGGGACGCCCCCTGGCGAGCAGGGGAGTCACTCAGCGC
ATCTTTGTTCGCCCACACAAAACGTGCACCTTCGCGCCTTTACCTCTCCG
ACGCGAGCTTTGACGCGATAGGCGGGTACTGTCCAGAACCAAAGAATTCC
TGGAGATACACCCAACGCTATCCAAACACTCAAACGCAAGGCCATAGCTA
TAGAGGATTCGGAGCTTTCGATTAACCTGCTTGAGCTCGGTGGGATGTTT
ATGACGGCATGGGTTGTACAGATGGTTCTAGCAGACAGACCGCGAGAAGA
AGGACAATCCGTATTGATCAGGGGGGATAACCAGTCGGCCGTCTCCTGGA
CTAAAACGTGCGGGGGGTCGCGGAATAGACGGGCCAGTTTACTGATGAGA
CTCATGGGGCGGACGGAAATTGCATCTGGTTGGTGCCATGTGGCAAAGCA
CATACCCGGTTGAGAAAACATGCTTGCGGACGGCATCTCTCGGTGGGACA
AAAACCTGATCGCTGCAAACGTAAGGAGACTCACAAACGATGCGGGTTGG
AGTGAGCAGGATATTGGGGCCGGGGGCAGGGCTCTGGTCGAAACTCTGCT
CAGTGAAACATTTTCTAAAGAACGTCTGGGCGACACTATGTGTGTGTGTT
GTCATCCCTTTCATTGGACGCCACTCTACACCTTTCGGGTAGGCAGACGC
TCCAACCGGGGTCACACAGGGGGAAGTCAACACAGGAGTTTGTTTTTTTT
CCACTTCCCTCTGCCGTGCTTGCCTTTTTGGTTGAGCTTTTATCGCGAGA
AAGGGGACAGCAATCTCTTTCCCTCGTCGATGGTACGATCGAATTTTGTT
TACTCACGAATTGATCGCTTTCCACTTTCACGCTCAACGTGAGGGAAAAG
CCCAGATCGTGTTACTGCACTGGGATTCGAACTCACGCGTGAATGCCAGA
AGGTTGCATGGGTAACCAACTAAACCACCGGGGCGACCGGTTGTCTGTGT
GGACAGTTATGTTCCGCGGTTAGACTTTATAGTCAGCTAGACACGTGAGA
CACGGAATGGGGGGGTGGGACGCCCCTCCTCCGAATTCCGTCTCAGCTTG
GATGGAACACCGAAAATTCGTCTTGTCACAAACTCGATGAAGAAGGATGG
AAGGACTCTGCCCTAAAAAAACTGATATCTAGACAATGCAGCGACTCAGA
AGCCTCGTAGCCGGGAAGGGTGGGTTAGGACGCTCCTTCGGAAACCCCTC
CTCACAGTGGCTGAAAACAAAACTTGAACACCTTCGATACGCAACGCGAG
GGGACCCTCGAACTGGCATATACGTCTGTTCCTGCGTGTTACTGATGTGG
GTAAAATTGAGGAACACGAGAAAGAAAACTGAAATTCGAAATGTCACATA
TTCAATGAAAGTGGGACGGAAGGACTCCGCACTCAAAGAACTAATATGTC
AACAATGATGTGATTCAGAAGCCTCGTAGCCCGGAAGGGTGGGTTAGGAC
GACCCTTCGGAAAACCCCTCCTCACCGTGGCAAAAACGTTACTTGGGCAC
CCTCGACACGCAGCGCGAGGGGATCCGCGAACTGCATGTATGTCTATTCC
CGCGTGTGACTGATGTGGAAAATACAGGAACGCGAGAAAGAGATGGCATG
GCAGGGACGAGTGCGGAAGGCGCACGTCTGGTCGTCGCCTAAACGTTCGG
GTCGCAGGACAGGGGTACCAACAAAGTATACCTGAGTAATTGGCAGACAC
GTGAAGCGGCGAGGGCGCAGGGAGGCCTGGGACCGTGGCTGAAAGAGAGA
TATGGGGTCGAGAATGCTGTGCGAGAATTGGCAGTGCTCATGGCGTGCCG
GTGCTTTGCTGATAAGAACCAGAGCCAGACCATTACGTGGTATCTCTCGA
CCATTACGAGGAAAATTTCACTTGGGCGAGGAATGGTAATGATAGCTAGA
TATCGGACTTGCCCGATGGGGTGAGAAGTGTTTAGGCCAGAGGTCTAGAC
AGAGAAAAAGTCGGGAAATTTAGGGAAGTGAGTTGCGGGTTAGCTCGATA
AGAAACACTGTGGACAAGATGGCGGTTTACCTGCGTTCACAGAGTTTCGG
TGTTGGTTTTTTTTTGTTGCCTGTAGAAAAAATAATCCAGAATTTTTGAG
CAGAACACAAACGGGAAGATTTGGTACGTTCTTGAGTATGTGCTTTTTGG
AGGCGGTTCGGAATTCGGAAAAGCAGGGATGAGGGGATCAGGGAAGCCCA
GAGTTGTGCACAAAGTCTTCGGTGCTCGGGTGGCGAGGCAGAAGAGGAGC
AAACGCGTTTATCAGAGAATTGGCTCTGGAGTAAGTAGCAGCAGCTAGAG
AGGCTGCAGAGAGAAGTGACACTCAGGACTTGATCGATTTTCCCACCCAC
CCACACCTATCGCTCAAGAGAGGAGGAACAAGGGGGGGTCTAGCTGATTG
AGTACTAGATGGCCCTTTTTACAACGAAAAAGCAGAGCTGTAATTTATCA
TGGAGAATTAGTGGGGTGAGAAGTATTTAGGCCAGAGGTCTAGATAGAGA
AAAAGTCGGGAAATTTCAGGGAAATTTAGGGAAGTGAGTTGCGGGTTAGC
CCGATAAGAAACACTGTGGACAAGATGGCGGTTTACCTGCGTTCACAGAG
TAACGTGTTTGCGATGAGGAAATTTCAACTTGTAACGACCAGTTCGGGGG
AATAGATACCGACGCAAATCAGAATATGCAAAGCA back to topCoding sequence (CDS) from alignment at P-littoralis_Contig172:337146..345130- >mRNA_P-littoralis_Contig172.55.1 ID=mRNA_P-littoralis_Contig172.55.1|Name=mRNA_P-littoralis_Contig172.55.1|organism=Pylaiella littoralis U1_48|type=CDS|length=444bp|location=Sequence derived from alignment at P-littoralis_Contig172:337146..345130- (Pylaiella littoralis U1_48) ATGGACAGCGACGCCACGGAGGTGGTCGTGCTACTCCGGAAGGCGCGGCG GCGGCTCCTGTCTCACAGGGGGCCCACCAGTTACCCCTACTGGGTTATAG CAACGGCGGGGGCAGAGGAGGCGGAGGGAGAGGAGATTGCGGAGGGCGCA GTGGAGCAAATACTTGGAGGCGCGGGCCCCCCCTCTGAGGAGGCGGGACC GACAAGGGGCAGGGGCGCGCGCGGAGCAGCAGCGGCAGCCTTTGCAAATA GCAATAGGACCGTAGCAAGTGCTGGAGTTCCCTTTCCCGGGTCGGTGGAT CTGCGGTGTTTTACGCGCGAGGGGATCCGCGAACTGCATGTATGTCTATT CCCGCGTGTGACTGATGTGGAAAATACAGGAACGCGAGAAAGAGATGGCA TGGCAGGGACGAGTGCGGAAGGCGCACGTCTGGTCGTCGCCTAA back to top
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