mRNA_P-littoralis_Contig170.91.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig170.91.1
Unique NamemRNA_P-littoralis_Contig170.91.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig170.91.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig170contigP-littoralis_Contig170:361148..362396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size524
Hectar predicted targeting categoryother localisation
Exons2
Cds size522
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789826.4331346-CDS-P-littoralis_Contig170:361149..3613981680789826.4331346-CDS-P-littoralis_Contig170:361149..361398Pylaiella littoralis U1_48CDSP-littoralis_Contig170 361150..361398 -
1680789826.4910946-CDS-P-littoralis_Contig170:362123..3623961680789826.4910946-CDS-P-littoralis_Contig170:362123..362396Pylaiella littoralis U1_48CDSP-littoralis_Contig170 362124..362396 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig170.91.1prot_P-littoralis_Contig170.91.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig170 361150..362396 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig170.91.1

>prot_P-littoralis_Contig170.91.1 ID=prot_P-littoralis_Contig170.91.1|Name=mRNA_P-littoralis_Contig170.91.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=174bp
RLEALNNRHHQALLEGATERLHLQHKIQLMVLKISELETELGEIKDSLGG
KADKAHPAAPGIARIDHSILIGKDSTQVRSLVGVSSHYSLEKLYEFLDAE
GAATHVVFYDKREGSGLKQTGERVSHRNGVFRGINGLFLTLMVLRTAVPL
VVASTLFGVHETTVGRAFTTWLNF
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mRNA from alignment at P-littoralis_Contig170:361148..362396-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig170.91.1 ID=mRNA_P-littoralis_Contig170.91.1|Name=mRNA_P-littoralis_Contig170.91.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1249bp|location=Sequence derived from alignment at P-littoralis_Contig170:361148..362396- (Pylaiella littoralis U1_48)
AGGCTGGAAGCCTTAAACAATCGGCATCATCAGGCTCTCTTGGAGGGAGC
CACCGAGCGGCTGCACCTCCAACACAAAATCCAGCTAATGGTGCTCAAAA
TCTCGGAGCTGGAGACGGAGTTGGGAGAGATCAAGGATAGTTTGGGGGGT
AAGGCAGACAAAGCGCATCCCGCAGCACCTGGTATCGCGAGGATCGATCA
CTCCATCCTTATCGGCAAGGATTCAACACAAGTTCGTAGTCTTGTGGGAG
TGAGCTCCCACTACTCTCTGGAGGTGAGATTCATGCCACTGCTGTACAAG
TAGCTGCAGCAGGAGCGTCGAACTGCGGTGGTAGGCATGCACAGCTCAGA
GAACAGGAGAAGTCCTTACCTCAACCAAAATGGGGCTTGTTCGCCCTTGC
TCGCCCTTGATTCGTGCTGCCGGTAACATTTCAGGAAAGTCACATTCATA
AACTCGCCCCATTTTTGAAGTAAGACATCGCGTGAACATCCTCCCTCGTG
TAAAAAGGGAACGTGTACAATCGTGTTTGAAAGGGTAAGATAATGGGGAA
AGGCTTGGCTCTCACTAGTGTAGAGTGCCTCGCATGACACATGAATACCA
TTACCATAATGCGCAAGCACCTTTCAGATTTTCAATTTTCAGAAGATCAT
CCCCACCGTGGTTTTTTGCTGGTATTTTTTGCTGGATCTTCAGGGGTTAC
CTAGGCCGCCGCCGCAGCCGGTCCAACCCGTTCGCTAACATAAGGCCCAG
GGCTCGTTCTTTGGAGGCCGTGAAAATATTTGTGTTCTTTAAATGCTACA
GATCGATGTATGACGTACTCCCGACGGAGCCGATGCCAGTACGTATTGAT
TCCGTCGGGTTTGTGAGCAAGGAGACTCCTTCATGCCCCCCCTTTGTATT
TCGCCTGCGCTTCCTCACACGAATATGCTCAAGTACAGACGGCCGTCTGA
CCCGTTATTTTTATTGTGCGCGTGAACCCCCGTATTACTTCCGAACAGAA
GCTTTACGAATTTTTGGATGCAGAGGGCGCCGCGACACATGTGGTGTTTT
ACGACAAACGAGAGGGCAGCGGATTGAAACAAACTGGAGAAAGGGTCAGC
CATAGAAATGGCGTTTTTCGCGGTATCAATGGTTTGTTTTTGACGCTGAT
GGTGTTGCGCACTGCCGTTCCGCTGGTGGTGGCGTCGACCCTCTTTGGAG
TACACGAGACCACGGTAGGTAGAGCGTTCACGACATGGCTAAATTTCCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig170:361148..362396-

>mRNA_P-littoralis_Contig170.91.1 ID=mRNA_P-littoralis_Contig170.91.1|Name=mRNA_P-littoralis_Contig170.91.1|organism=Pylaiella littoralis U1_48|type=CDS|length=522bp|location=Sequence derived from alignment at P-littoralis_Contig170:361148..362396- (Pylaiella littoralis U1_48)
AGGCTGGAAGCCTTAAACAATCGGCATCATCAGGCTCTCTTGGAGGGAGC
CACCGAGCGGCTGCACCTCCAACACAAAATCCAGCTAATGGTGCTCAAAA
TCTCGGAGCTGGAGACGGAGTTGGGAGAGATCAAGGATAGTTTGGGGGGT
AAGGCAGACAAAGCGCATCCCGCAGCACCTGGTATCGCGAGGATCGATCA
CTCCATCCTTATCGGCAAGGATTCAACACAAGTTCGTAGTCTTGTGGGAG
TGAGCTCCCACTACTCTCTGGAGAAGCTTTACGAATTTTTGGATGCAGAG
GGCGCCGCGACACATGTGGTGTTTTACGACAAACGAGAGGGCAGCGGATT
GAAACAAACTGGAGAAAGGGTCAGCCATAGAAATGGCGTTTTTCGCGGTA
TCAATGGTTTGTTTTTGACGCTGATGGTGTTGCGCACTGCCGTTCCGCTG
GTGGTGGCGTCGACCCTCTTTGGAGTACACGAGACCACGGTAGGTAGAGC
GTTCACGACATGGCTAAATTTC
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