mRNA_P-littoralis_Contig17.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig17.2.1
Unique NamemRNA_P-littoralis_Contig17.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig17.2.1 vs. uniprot
Match: A0A6H5JZM6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZM6_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 7.690e-14
Identity = 57/146 (39.04%), Postives = 81/146 (55.48%), Query Frame = 1 
Query:   37 SVGQRSVRSVEDTTPPSSNQPLRSTILRLQAIVDKDLTRLDAGDINELPPQTMILMDRLFAHHDKQAQSSRHTSSGRPHSSXXXXXXXXXXXXGSGGHPNNNGKRPARHGKGRGGPPRERPKCTYSKCNKPLGHTIATCYQKARDE 474
            SV   +  SV   +  SS+  L ST+ ++Q++VD+ L  +  G + +LP   + LMDR+F HH +    +    SG     XXXXXXXX    G+      N +RP R         +ERP+CT+  C+KPLGHT ATC+QK R+E
Sbjct:   76 SVASTAAPSVGAPSASSSSTDLTSTLSKIQSVVDRHLDLVTDGRLEQLPDHVVQLMDRMFEHHRQNRGRTPAFQSGSSXXXXXXXXXXXAPRHGTHRGXXGNSRRPVR---------KERPRCTHPTCDKPLGHTTATCFQKKREE 212
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BLAST of mRNA_P-littoralis_Contig17.2.1 vs. uniprot
Match: A0A6H5JC92_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC92_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 8.830e-5
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:  382 PPRERPKCTYSKCNKPLGHTIATCYQKARDEK 477
            P   RP+CTYSKC KPLGHT  TC+Q+ RDE+
Sbjct:  208 PAAPRPRCTYSKCKKPLGHTFETCFQRQRDER 239
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZM6_9PHAE7.690e-1439.04Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JC92_9PHAE8.830e-565.63Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig17contigP-littoralis_Contig17:4346..5836 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size630
Hectar predicted targeting categoryother localisation
Exons2
Cds size381
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789813.620983-UTR-P-littoralis_Contig17:4345..44021680789813.620983-UTR-P-littoralis_Contig17:4345..4402Pylaiella littoralis U1_48UTRP-littoralis_Contig17 4346..4402 -
1680789813.6511683-UTR-P-littoralis_Contig17:5644..58361680789813.6511683-UTR-P-littoralis_Contig17:5644..5836Pylaiella littoralis U1_48UTRP-littoralis_Contig17 5645..5836 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789813.6329129-CDS-P-littoralis_Contig17:4402..47621680789813.6329129-CDS-P-littoralis_Contig17:4402..4762Pylaiella littoralis U1_48CDSP-littoralis_Contig17 4403..4762 -
1680789813.6419241-CDS-P-littoralis_Contig17:5623..56441680789813.6419241-CDS-P-littoralis_Contig17:5623..5644Pylaiella littoralis U1_48CDSP-littoralis_Contig17 5624..5644 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig17.2.1prot_P-littoralis_Contig17.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig17 4403..5644 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig17.2.1

>prot_P-littoralis_Contig17.2.1 ID=prot_P-littoralis_Contig17.2.1|Name=mRNA_P-littoralis_Contig17.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=127bp
MILMDRLFAHHDKQAQSSRHTSSGRPHSSSSGRPNISTSGRGSGGHPNNN
GKRPARHGKGRGGPPRERPKCTYSKCNKPLGHTIATCYQKARDEKKGRGN
EDDNDHEDKRARRHHRRSSDTDDEDN*
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mRNA from alignment at P-littoralis_Contig17:4346..5836-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig17.2.1 ID=mRNA_P-littoralis_Contig17.2.1|Name=mRNA_P-littoralis_Contig17.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1491bp|location=Sequence derived from alignment at P-littoralis_Contig17:4346..5836- (Pylaiella littoralis U1_48)
TCGTCCTCTCCACGCGACCACACGGAAGACACCGCCAGCGTCGGTCAACG
CTCAGTTAGGTCCGTCGAGGATACCACTCCTCCATCCAGCAATCAACCTC
TCCGCAGCACCATCCTGCGCCTACAAGCGATCGTCGATAAGGACCTGACA
CGTCTGGACGCCGGCGACATCAACGAGTTGCCCCCCCAGACCATGATCCT
CATGGACCGTCTGGTAAGTTTATCTGCGTCCTGTCCTACGAGTGATTCTT
CATCCACCGCTGGTTCACAGAATTCTGTTACCGTGTCCTCTGCAGTAAGC
TCGTCTGTCCCCCAGCTCACTCAGTCTTTTGCCGCAGCCTTGTCTAGCGG
TCAACAGAAACACGTTGTCCTCACACCAGCGGATGTCAAACAACTACCTC
GCCTAAATGGTAGCGATGATGTCGATATCAACTCCTGTCTTTCCCAGTAT
CGGTTGATCGCTGGCTTCAAAGTCAAGTCGTCGTACCCATCGAGTACCTC
TGTCGGCCGTCTTGAAAAATGCAGCGACCAAGTGGCTTTCGAGTCTTGCT
CATTGATCTGTGATGGTCCCATCCTTGTCTTATACCAACAACTCATGAGT
GGTAGTATCGATTGGCGGTCCACCAATATGTCCGCCGATACTGCCACCAC
AGCCGGCTCTTTTGTCCCACCGAAAACATGGGAAGAGCTCAAATCCGCTC
TTCTCGACTGTCTGATGCCGACCAACAGTGTAGAAGAAAGCGCTTTGCGA
CTTGCCACGTTCAAACAAACCCGTAGTGAGACTCTCAGCTCCTACGCCCT
CCGCTTTCAAAACGAATGTGATCGTTTCGTCAGCGCTGTCAATCGCGTCA
GCCCAGACCGTACCCCTTTCGATGCCTTGAAAGTGATCTTGTTCCAACAT
GGTCTCATCCCTGCTGTCAAATGCATGTCCTTGTCGGATGAACCTGTCAA
GACTATCCGTGAAGCTGTCGACCGCGCTCGTCGTCACGAAGCCGCTGGTC
TCGCGGGTGGGTCTGCCACTGTTAGTGCTTTGTCGTTCACACCGGTCCCC
AACCGTGCCGCTGTATCCCAACAGTTTGCCCATCACGACAAGCAGGCACA
GTCTTCCCGCCACACCTCCAGTGGTAGGCCCCACAGCAGCAGCAGCGGTC
GCCCCAACATCTCGACGAGCGGCCGCGGTTCCGGCGGCCACCCGAACAAC
AACGGCAAGCGCCCTGCTCGTCACGGCAAGGGGCGCGGCGGCCCACCACG
CGAGCGGCCCAAGTGCACGTACTCCAAGTGCAACAAACCGCTCGGCCACA
CCATCGCCACCTGCTACCAGAAAGCACGCGACGAGAAAAAAGGCCGCGGC
AACGAAGACGACAACGACCACGAAGACAAACGTGCTCGCCGTCACCACCG
CCGCTCCTCCGACACCGACGATGAAGACAACTGATGGTGCCCAGCTGTTG
CTCCGCCTTCAGCAGTTGGGAAATTGTCGAATAGTCGTACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig17:4346..5836-

>mRNA_P-littoralis_Contig17.2.1 ID=mRNA_P-littoralis_Contig17.2.1|Name=mRNA_P-littoralis_Contig17.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=381bp|location=Sequence derived from alignment at P-littoralis_Contig17:4346..5836- (Pylaiella littoralis U1_48)
ATGATCCTCATGGACCGTCTGTTTGCCCATCACGACAAGCAGGCACAGTC
TTCCCGCCACACCTCCAGTGGTAGGCCCCACAGCAGCAGCAGCGGTCGCC
CCAACATCTCGACGAGCGGCCGCGGTTCCGGCGGCCACCCGAACAACAAC
GGCAAGCGCCCTGCTCGTCACGGCAAGGGGCGCGGCGGCCCACCACGCGA
GCGGCCCAAGTGCACGTACTCCAAGTGCAACAAACCGCTCGGCCACACCA
TCGCCACCTGCTACCAGAAAGCACGCGACGAGAAAAAAGGCCGCGGCAAC
GAAGACGACAACGACCACGAAGACAAACGTGCTCGCCGTCACCACCGCCG
CTCCTCCGACACCGACGATGAAGACAACTGA
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