mRNA_P-littoralis_Contig17.182.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig17.182.1
Unique NamemRNA_P-littoralis_Contig17.182.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig17.182.1 vs. uniprot
Match: A0A6H5L1Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Y8_9PHAE)

HSP 1 Score: 228 bits (580), Expect = 4.360e-67
Identity = 165/280 (58.93%), Postives = 191/280 (68.21%), Query Frame = 1 
Query:   34 RQRPDPHGVLVTVPVAFNRYLGCGDAAFVLAEVLRHVLFMRGQLPMPYHQLLQASKASVLDEREERDHDAREKELAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGDVCLASAAAVTSSKRRSTRVKSGRPLARTPAHRRARKGLGALDETTRAMEEAFADAAGRGRPVLEALILFGASHLSPSREIYSVTFTQPFPDEGSSKSEDVLQGGEQGGDANTTRSDGGGGTGSVQGKSSLADAYSRKLVRTVVGEMSSVDFRGLGSCRVHIFLRVADAPARD 873
            R+R  P    VTVPV F ++LG GDAA V+ EVLRHVLFMRGQLPMP+ QL++     VLDEREERD   R        XXXXXXXXXXXXXXXXX          G   L S       +RRS + KSGRPLA+ P HRRARKGL AL ETT A+EEAFADAA +GRPVLEAL+L GASHLSP REIYSVTF+    DE SS+S+D           NT  S      G ++GKSSLADAYSR LVR++VG+MSS+  RGLGSCRVH+FLR+A+ P +D
Sbjct:   25 RKRQHPEQQEVTVPVVFKQHLGSGDAAHVVIEVLRHVLFMRGQLPMPFQQLVK-----VLDEREERDEVDR--------XXXXXXXXXXXXXXXXXAREGRGRTREGGDALGSGLTGAVDRRRSKKAKSGRPLAKAPPHRRARKGLRALAETTLAVEEAFADAARKGRPVLEALVLLGASHLSP-REIYSVTFSGSCLDE-SSESKDTTT-------RNTASS------GDLRGKSSLADAYSRTLVRSMVGKMSSMPLRGLGSCRVHLFLRIAEGPVQD 276
[Close]
BLAST of mRNA_P-littoralis_Contig17.182.1 vs. uniprot
Match: D7FJH5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJH5_ECTSI)

HSP 1 Score: 219 bits (557), Expect = 2.860e-65
Identity = 160/280 (57.14%), Postives = 186/280 (66.43%), Query Frame = 1 
Query:   34 RQRPDPHGVLVTVPVAFNRYLGCGDAAFVLAEVLRHVLFMRGQLPMPYHQLLQASKASVLDEREERDHDAREKELAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGDVCLASAAAVTSSKRRSTRVKSGRPLARTPAHRRARKGLGALDETTRAMEEAFADAAGRGRPVLEALILFGASHLSPSREIYSVTFTQPFPDEGSSKSEDVLQGGEQGGDANTTRSDGGGGTGSVQGKSSLADAYSRKLVRTVVGEMSSVDFRGLGSCRVHIFLRVADAPARD 873
            R+R  P  + VTVPV F ++L  GDAA V+ EVLRHVLFMRGQLPMP+ QL++     VLDEREE           XXXXXXXXXXXXXXXXXXXX          G   L S    T  +RRS + KSGRPLA+ P HRRARK L AL ETT A+EEAFADAA +GRPVLEAL+L GASHLSP R+IYSVTFT    DE S   +   +    GGD              V+GKS+LADAYSR LVR++VG+MSS+  RGLGSCRVH+FLR+A+ P  D
Sbjct:   25 RKRQHPEQLEVTVPVVFKQHLRSGDAAHVVIEVLRHVLFMRGQLPMPFQQLVK-----VLDEREE----------XXXXXXXXXXXXXXXXXXXXXAREGRGRTREGGDALGSGLTETVGRRRSKKAKSGRPLAKAPPHRRARKSLRALAETTLAVEEAFADAARKGRPVLEALVLLGASHLSP-RKIYSVTFTGSSLDESSESKDTATRNTASGGD--------------VRGKSNLADAYSRTLVRSMVGKMSSMPLRGLGSCRVHLFLRIAEGPVPD 274
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L1Y8_9PHAE4.360e-6758.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJH5_ECTSI2.860e-6557.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig17contigP-littoralis_Contig17:763886..767875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1111
Hectar predicted targeting categoryother localisation
Exons7
Cds size1110
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig17.182.1prot_P-littoralis_Contig17.182.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig17 763886..767875 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789820.80156-CDS-P-littoralis_Contig17:763885..7640141680789820.80156-CDS-P-littoralis_Contig17:763885..764014Pylaiella littoralis U1_48CDSP-littoralis_Contig17 763886..764014 +
1680789820.8125582-CDS-P-littoralis_Contig17:764584..7646621680789820.8125582-CDS-P-littoralis_Contig17:764584..764662Pylaiella littoralis U1_48CDSP-littoralis_Contig17 764585..764662 +
1680789820.8234012-CDS-P-littoralis_Contig17:764917..7651551680789820.8234012-CDS-P-littoralis_Contig17:764917..765155Pylaiella littoralis U1_48CDSP-littoralis_Contig17 764918..765155 +
1680789820.8368862-CDS-P-littoralis_Contig17:765457..7655991680789820.8368862-CDS-P-littoralis_Contig17:765457..765599Pylaiella littoralis U1_48CDSP-littoralis_Contig17 765458..765599 +
1680789820.8481786-CDS-P-littoralis_Contig17:766126..7663101680789820.8481786-CDS-P-littoralis_Contig17:766126..766310Pylaiella littoralis U1_48CDSP-littoralis_Contig17 766127..766310 +
1680789820.8659148-CDS-P-littoralis_Contig17:766877..7670751680789820.8659148-CDS-P-littoralis_Contig17:766877..767075Pylaiella littoralis U1_48CDSP-littoralis_Contig17 766878..767075 +
1680789820.8773265-CDS-P-littoralis_Contig17:767734..7678751680789820.8773265-CDS-P-littoralis_Contig17:767734..767875Pylaiella littoralis U1_48CDSP-littoralis_Contig17 767735..767875 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig17.182.1

>prot_P-littoralis_Contig17.182.1 ID=prot_P-littoralis_Contig17.182.1|Name=mRNA_P-littoralis_Contig17.182.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=370bp
ARPRKDRKVPKRQRPDPHGVLVTVPVAFNRYLGCGDAAFVLAEVLRHVLF
MRGQLPMPYHQLLQASKASVLDEREERDHDAREKELAAAAEAAAAAAARV
SAVTGGGGGGGGSTAGPGDVCLASAAAVTSSKRRSTRVKSGRPLARTPAH
RRARKGLGALDETTRAMEEAFADAAGRGRPVLEALILFGASHLSPSREIY
SVTFTQPFPDEGSSKSEDVLQGGEQGGDANTTRSDGGGGTGSVQGKSSLA
DAYSRKLVRTVVGEMSSVDFRGLGSCRVHIFLRVADAPARDPRSSEKPRS
TVATAAAAAAAALSIAGVSDENTSSSTFPTAGLSCGCPPTSCPSTRVQDS
RVAVTPRPAGESNSLTTLP*
back to top

mRNA from alignment at P-littoralis_Contig17:763886..767875+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig17.182.1 ID=mRNA_P-littoralis_Contig17.182.1|Name=mRNA_P-littoralis_Contig17.182.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3990bp|location=Sequence derived from alignment at P-littoralis_Contig17:763886..767875+ (Pylaiella littoralis U1_48)
GCAAGGCCAAGAAAGGATCGGAAGGTTCCGAAACGTCAACGTCCGGATCC
ACACGGGGTACTCGTGACGGTGCCCGTTGCCTTCAATCGGTACCTCGGCT
GTGGAGATGCGGCCTTCGTTCTTGCAGAGGTGGGGTGTTGAGGGTGGGCT
AGAGTGGGGTGTGGGGTGCGATTCAGCGATGTCTGAAATTATTGACTTCC
GTTTTCCGAGATAAATGATCGATGATCTGGTACTGGTTCCATCGGGGGAA
ACACATTTCATTGGACTTCTACTTTGGTATGATTTTCGAAACTCGGCGAA
ATTGGTCAATGGCAACATATACCGCGGTATAGACAATATCAATCACGGTG
TCATGAAATCTGAACGTAGCGAGCTCGCAGAGGGCTCGGTGCAACCCTAG
AATTACTGCCGTGCCAAAACCTCGGCTGCTGATTTGCGGCGAAATAATAT
TGGCGTCACGATGTACACTGCAGTTGTGTTTGTTGCTGTTAGAGGGTCTG
GAGACCGCCTCCCTCGTGTACAATGTGTCGCTCTCATACCCCCCCCCTCC
TCTCCGTCACTTCCTCTCTCTCTCCCTCTCTCCCTCTCTCTATCTCTCTC
CCTCTCTCTCTCTCTTAATCGTATCTCTCTTTCGTGATACGACCCGACGC
CCACGAATGCATGTATGTATGCACGGACGAAATTTGGACTACCAAAAAGG
TGCTGCGACACGTACTCTTCATGAGGGGACAGCTCCCCATGCCGTACCAC
CAACTACTCCAGGCAAGCAAGGCGTCCGTCCATCCGCTCCCCATCCGTGC
ACATCCATTTGCTTTGGCCCAAAAAAATGATGCCGATACTGTTGGCCACT
GCCGTAAGAACCGTTCTCTGCATGCATTCGATCCCCCCCCCGCGGTCGTA
GGAGGCAACACAGACGAGTTTTCTCACCGCCGGTTTTATGAGCCAGACCG
TCCGTCTTCGTGGCACGTCATCTTTGCTGTTTGTTTTCGTGGTCGTTCAC
TCTCTCGCCCCGATGGCGCTCCGTGTCCTCAGGTGCTGGACGAGCGCGAA
GAGCGGGACCATGACGCCCGAGAAAAAGAGCTAGCAGCAGCGGCGGAAGC
AGCAGCAGCAGCAGCAGCAAGGGTTTCCGCCGTCACAGGGGGAGGCGGCG
GAGGAGGAGGGAGCACAGCGGGACCGGGGGATGTTTGTCTTGCTAGTGCA
GCAGCAGTGACAAGCAGCAAACGCCGTAGTACGAGGGTCAAGAGTGGGCG
ACCCCTGGCGAGGACTCCTGGTGAGAGAACCGAGAAAGCAGGGTGACTTG
CCGGCTTGTTGTTCGTACACCGTTCGTGTGGCTGTTGGGGTCTCTGGTAA
AAAAAAACATCACGTGTCTGCTTTGCTTTGCCGAAGTTGTCCATACGGGG
CAGACAACCCCTTCCCTTACCAAGTAAATGCCGTGGGCAAGCTCCTCCTG
TCTCGAAAGTAGTACGCGGTTTCAGAGGTTGGAATCGTCTCGAGGCAAAC
TACGTATCAGCTGAGCACGCGCCGTTTGCCTCCACACGTCCTGCTGTGCT
GCGCCTTTGCCGAACGACGCAGCGCACCGTCGGGCACGAAAGGGCTTGGG
GGCGTTGGACGAGACGACCCGTGCCATGGAAGAGGCATTTGCGGACGCTG
CCGGCAGGGGGAGGCCTGTGCTCGAAGCCCTCATCTTGTTTGGAGCATCG
CATCTCTCTCCGAGGTGATTTTGGAGAGAGAGCAGTCTGACCACAACGGG
CTGCGCATGCTAGAGATGAGCTACTCTGTAAGTCACGTGGGAAAAACAGC
GTCGACTCCTTTTACAAAACAATACCAACAATACCAACATCGACGGCAAC
AATCACAGAAACAAATCTACCAGCCGTTTTTTCGCTGAGGGGAGGGGGGG
GGGGGCTGATGGACTCTTCCGTGAATGCCAAACTACCGCGTGGTCTAAGT
TGACCCGTGTTGGAGCGACTGCTTTGTGAAGGCTGGGATCAGGACTCGAA
GTAGATCAGGGCACAGCAGTGTAGAATGTCAAGCCACCGGAGATTAACGA
TTCGATCCCAAAAGGCGCACCTCGACTTTCGCCCAACTTTTTTGATTTCA
TTCGCTCGTTGCCCGCATGCATCTCCCACCCCTTACCCATCACCCGCCGC
CGGCCACACCTCCACAAGCTTATCATCACCAACCGGGCAGTACGCATTTT
GCACCCCACGCCCCATGTTCTACTCCCTCACCGAACTCAAGCAGGGAGAT
CTACTCTGTGACTTTCACTCAGCCTTTTCCCGACGAAGGGAGTTCCAAGA
GTGAAGATGTTCTTCAAGGCGGGGAACAAGGAGGCGACGCAAATACTACG
CGCAGCGACGGCGGCGGCGGCACCGGCAGTGTCCAGGGCAAGAGCAGCTT
GGCCGATGCTTACTCTCGAAAGCTGGTGAGACGAGGAGAGAAAAAATCGA
CCATGAGTGAAAGGTGCCTGCTGTAACCCACGGGTATGTAGCCCGGTGGA
GACGGAGTGAGTTACACAGCAGTAGCGTAATCGCAACATGTACTGCGACA
TACGAGTATGCGAATGTCACCCGCGTTCTTACTGATTGAAACGGTTTTGC
TTGAGTGCCGTGTCGGTTTTGTTTTTTTATGTTTCGTTGTTTTTCTCCGA
CTGGCAATGTGGACGTGTGATACGTGTGCGCATATGAATGTTAACTTGTG
ACTTGACGTCTCACAAGCGAAAAAGCGGGAACCGATACGAAAAAACGGGT
GCATATTTCAGATCTGGGATTGTTGAATTGCCAAACTCCTTACCAGTCTT
GGGGTGTCGCTCATATGATCTCCGTGTCTAACGTCCCGACGCTTTGGCTA
TTTCCTTCGTTATCGCAACCCAGCTGGATTGTTCGCATGTTAACCGGTGC
AGTAATCGTTGACGATTTGCTTGTTTTCTTGGACATCCATTTGAGTCTAG
TCCAAGTTTGTAGGTTTTTTGTCTCCGTCTGGACCGGTGCAGGTGCGAAC
CGTGGTCGGAGAAATGTCGAGCGTTGACTTTCGCGGGCTCGGATCGTGCC
GGGTGCACATTTTCTTGCGCGTTGCGGACGCTCCCGCCCGAGATCCTCGA
TCCTCCGAAAAACCGCGGTCGACGGTCGCTACAGCTGCTGCAGCGGCTGC
TGCTGCTCTCTCCATTGCTGGGGTAAGCGATGAAAACACTGTTCGCCGAA
ACCTATACACAAGAGGCGTTGGATACTTTGTCCAGACAGGATTGGGGATG
ATGTGCTTGGACAACGTTCCGCCATTGTCATACGATGAGAGCATTATGGG
GGATAATCGCGAATGCTTCAGCGGAATACCACTGCTGGGATACATTCGCC
CCGCCGCTGTGGTAGCGCTCCATATTCTCCGACAAGAGGGTTATTTTGAC
GATACAGTGTTGCGAGTATGGAGTCTTAAGTCCAAACTATCGGGCAGGGA
ACGTCTTCAGTGACGAGTGACGCATTAGCTGACACAGCAATACTTTCGTT
TTTTTTGGGGGGAGCACGTGGAAAGAGTATCGCACGGTCGTTGGGCCGCG
GACGTTTTTCCCTTCTGGCTAAGTTAGCAGTGGAGCGACGACGTAACAAG
ACAGGAAAAGCCCAAGGTAGACTCTTTGCCGCAAACCCACATGACAGATG
CCATACGATCATGACCCCCAATGCCCGTACGTCACACACACACACACACA
CCCCCCCCCCCGTTTTTTGTCCAGAACGCGAACACGGCAACCGACAGCCG
CGGCAGCAACGCCAGCAATACCAGAAACGACAACGACAGCACCGGAACAC
CCAACAACCACCACGCCACCGCCCCCGTCGACCCTTCTCCACACCCGAGA
GTAGCAGCACCTTTCCTACCGCCGGCCTCTCCTGTGGCTGCCCCCCGACG
TCTTGTCCCTCGACCCGGGTTCAAGATTCGCGTGTCGCGGTCACGCCCCG
CCCCGCAGGTGAATCCAATTCTCTTACCACCCTTCCGTGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig17:763886..767875+

>mRNA_P-littoralis_Contig17.182.1 ID=mRNA_P-littoralis_Contig17.182.1|Name=mRNA_P-littoralis_Contig17.182.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1110bp|location=Sequence derived from alignment at P-littoralis_Contig17:763886..767875+ (Pylaiella littoralis U1_48)
GCAAGGCCAAGAAAGGATCGGAAGGTTCCGAAACGTCAACGTCCGGATCC
ACACGGGGTACTCGTGACGGTGCCCGTTGCCTTCAATCGGTACCTCGGCT
GTGGAGATGCGGCCTTCGTTCTTGCAGAGGTGCTGCGACACGTACTCTTC
ATGAGGGGACAGCTCCCCATGCCGTACCACCAACTACTCCAGGCAAGCAA
GGCGTCCGTGCTGGACGAGCGCGAAGAGCGGGACCATGACGCCCGAGAAA
AAGAGCTAGCAGCAGCGGCGGAAGCAGCAGCAGCAGCAGCAGCAAGGGTT
TCCGCCGTCACAGGGGGAGGCGGCGGAGGAGGAGGGAGCACAGCGGGACC
GGGGGATGTTTGTCTTGCTAGTGCAGCAGCAGTGACAAGCAGCAAACGCC
GTAGTACGAGGGTCAAGAGTGGGCGACCCCTGGCGAGGACTCCTGCGCAC
CGTCGGGCACGAAAGGGCTTGGGGGCGTTGGACGAGACGACCCGTGCCAT
GGAAGAGGCATTTGCGGACGCTGCCGGCAGGGGGAGGCCTGTGCTCGAAG
CCCTCATCTTGTTTGGAGCATCGCATCTCTCTCCGAGCAGGGAGATCTAC
TCTGTGACTTTCACTCAGCCTTTTCCCGACGAAGGGAGTTCCAAGAGTGA
AGATGTTCTTCAAGGCGGGGAACAAGGAGGCGACGCAAATACTACGCGCA
GCGACGGCGGCGGCGGCACCGGCAGTGTCCAGGGCAAGAGCAGCTTGGCC
GATGCTTACTCTCGAAAGCTGGTGCGAACCGTGGTCGGAGAAATGTCGAG
CGTTGACTTTCGCGGGCTCGGATCGTGCCGGGTGCACATTTTCTTGCGCG
TTGCGGACGCTCCCGCCCGAGATCCTCGATCCTCCGAAAAACCGCGGTCG
ACGGTCGCTACAGCTGCTGCAGCGGCTGCTGCTGCTCTCTCCATTGCTGG
GGTAAGCGATGAAAACACTAGTAGCAGCACCTTTCCTACCGCCGGCCTCT
CCTGTGGCTGCCCCCCGACGTCTTGTCCCTCGACCCGGGTTCAAGATTCG
CGTGTCGCGGTCACGCCCCGCCCCGCAGGTGAATCCAATTCTCTTACCAC
CCTTCCGTGA
back to top