mRNA_P-littoralis_Contig142.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig142.2.1
Unique NamemRNA_P-littoralis_Contig142.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig142.2.1 vs. uniprot
Match: A0A6H5L4L9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L9_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.470e-12
Identity = 57/174 (32.76%), Postives = 82/174 (47.13%), Query Frame = 1 
Query:  715 PLAFAPIPSIHCTTRCNTNSCTSSITMNPAAVNRRQLFQDVRALPLSSTRAHARQDALDLDDRETDRQRSLRIGQQIDKIRQNDLEGFHGVE-PCSPEMFSQFVASLRNVTNDVLTLSDSEREQSILSERWAPGWSHHLRKRVRNGI-RNPTANADTPSLVDDVFQQAAQHSLK 1230
            PL  +P      +   + NS T  I + P       L QD   LPL+STRA ARQ+ALD  D        +RI  ++DK++    +    +     P+ F++F +S + V  ++L  SD +R+Q+  S  W  GW   LRKRVR  +    T N  T   +D  F Q   H  K
Sbjct:  160 PLVVSPHSLQRASVLIDPNSATGHI-VEPPGQAASPLPQDDAGLPLTSTRARARQEALDAADAAATEADIIRIQDKMDKLKPEQRDSIIRLPLGPDPDEFARFASSCKGVVTEILNKSDVKRKQTFNSSTWVTGWLPLLRKRVRAAVVEGQTTNRATLEFLDATFLQVENHLRK 332
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BLAST of mRNA_P-littoralis_Contig142.2.1 vs. uniprot
Match: A0A6H5KHE6_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE6_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 3.450e-12
Identity = 56/176 (31.82%), Postives = 86/176 (48.86%), Query Frame = 1 
Query:  709 KPPLAFAPIPSIHCTTRCNTNSCTSSITMNPAAVNRRQLFQDVRALPLSSTRAHARQDALDLDDRETDRQRSLRIGQQIDKIRQNDLEGFHGVE-PCSPEMFSQFVASLRNVTNDVLTLSDSEREQSILSERWAPGWSHHLRKRVRNGI-RNPTANADTPSLVDDVFQQAAQHSLK 1230
            +P L  +P+P    +   + +S T  I + P +     + QD   LPLSST A ARQ+AL   D       ++RI  ++DK++   L+    +     P+ F++F +S + V  ++L  SD +R+Q+  S  W  GW   LRKRVR  +    T N  T   +D  F Q   H  K
Sbjct:  699 QPSLVVSPLPLQRASVLSDPDSATGHI-VEPPSQAASPVPQDDAGLPLSSTGARARQEALHAADAAAAEADTIRIQDKMDKLKPERLDSVTRLPLGPDPDEFARFASSCKGVVTEILNKSDVKRKQTFNSSTWVTGWLPLLRKRVRAAVVEGQTTNRATLEFLDATFLQVENHLRK 873
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BLAST of mRNA_P-littoralis_Contig142.2.1 vs. uniprot
Match: A0A6H5K8W4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W4_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 5.580e-12
Identity = 56/174 (32.18%), Postives = 84/174 (48.28%), Query Frame = 1 
Query:  715 PLAFAPIPSIHCTTRCNTNSCTSSITMNPAAVNRRQLFQDVRALPLSSTRAHARQDALDLDDRETDRQRSLRIGQQIDKIRQNDLEGFHGVE-PCSPEMFSQFVASLRNVTNDVLTLSDSEREQSILSERWAPGWSHHLRKRVRNGI-RNPTANADTPSLVDDVFQQAAQHSLK 1230
            PL  +P P    +   + +S T  I + P +     + QD   LPLSST A ARQ+AL   D       ++RI  ++DK++   L+    +     P+ F++F +S + V  ++L  SD +R+Q+  S  W  GW   LRKRVR  +    T N  T   +D  F Q   H  K
Sbjct:   59 PLVVSPPPLQRASVLIDPDSATGHI-VEPPSQAASPVPQDDAGLPLSSTGARARQEALKAADAAAAEADTIRIQDKMDKLKPEQLDSVTRLPLGPDPDEFARFASSCKGVVTEILNKSDVKRKQTFNSSTWVTGWLPLLRKRVRAAVVEGQTTNRATLEFLDATFLQVENHLRK 231
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BLAST of mRNA_P-littoralis_Contig142.2.1 vs. uniprot
Match: A0A6H5KQN2_9PHAE (NADAR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQN2_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.790e-9
Identity = 52/161 (32.30%), Postives = 79/161 (49.07%), Query Frame = 1 
Query:  715 PLAFAPIPSIHCTTRCNTNSCTSSITMNPAAVNRRQLFQDVRALPLSSTRAHARQDALDLDDRETDRQRSLRIGQQIDKIRQNDLEGFHGVE-PCSPEMFSQFVASLRNVTNDVLTLSDSEREQSILSERWAPGWSHHLRKRVRNGI-RNPTANADTPSLV 1191
            PL  +P P        + NS T   ++ P +     L QD   LPLSST A ARQ+AL   D       ++RI  ++DK++   L+    +     P+ F++F +S + V  ++L  SD +R+Q+  S  W  GW   LRKRVR  +    T N  T  ++
Sbjct:   59 PLVVSPPPLQRAFVLIDPNSATGH-SVEPPSQAASPLPQDDAGLPLSSTGARARQEALHAADAAAAEADTIRIQDKMDKLKPEQLDSVTRLPLGPDPDEFARFASSCKGVVTEILNKSDVKRKQTFNSSTWVTGWLPLLRKRVRAAVVEGQTTNRATLEIL 218
[Close]
BLAST of mRNA_P-littoralis_Contig142.2.1 vs. uniprot
Match: A0A6H5JVY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVY6_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 5.790e-5
Identity = 33/105 (31.43%), Postives = 53/105 (50.48%), Query Frame = 1 
Query:  922 SLRIGQQIDKIRQNDLEGFHGVE-PCSPEMFSQFVASLRNVTNDVLTLSDSEREQSILSERWAPGWSHHLRKRVRNGI-RNPTANADTPSLVDDVFQQAAQHSLK 1230
            ++RI  ++DK++   L+    +     P+ F++F +S + V  ++L  SD +R+Q+  S  W  G    LRKRVR  +    T N DT   +D  F Q   H  K
Sbjct:  103 TIRIQVKMDKLKPEQLDSVTRLPLGPDPDEFARFASSCKGVVTEILNKSDVKRKQTFNSSTWVTGRLPLLRKRVRAAVVEGQTTNRDTLEFLDAAFLQVENHLRK 207
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig142.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L4L9_9PHAE1.470e-1232.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHE6_9PHAE3.450e-1231.82Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K8W4_9PHAE5.580e-1232.18Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KQN2_9PHAE1.790e-932.30NADAR domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JVY6_9PHAE5.790e-531.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig142contigP-littoralis_Contig142:8956..10200 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1247
Hectar predicted targeting categoryother localisation
Exons1
Cds size552
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789664.873129-CDS-P-littoralis_Contig142:8955..95071680789664.873129-CDS-P-littoralis_Contig142:8955..9507Pylaiella littoralis U1_48CDSP-littoralis_Contig142 8956..9507 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789664.8822198-UTR-P-littoralis_Contig142:9507..102001680789664.8822198-UTR-P-littoralis_Contig142:9507..10200Pylaiella littoralis U1_48UTRP-littoralis_Contig142 9508..10200 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig142.2.1prot_P-littoralis_Contig142.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig142 8956..9507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig142.2.1

>prot_P-littoralis_Contig142.2.1 ID=prot_P-littoralis_Contig142.2.1|Name=mRNA_P-littoralis_Contig142.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=184bp
MNLCRKPPLAFAPIPSIHCTTRCNTNSCTSSITMNPAAVNRRQLFQDVRA
LPLSSTRAHARQDALDLDDRETDRQRSLRIGQQIDKIRQNDLEGFHGVEP
CSPEMFSQFVASLRNVTNDVLTLSDSEREQSILSERWAPGWSHHLRKRVR
NGIRNPTANADTPSLVDDVFQQAAQHSLKPGNFG
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mRNA from alignment at P-littoralis_Contig142:8956..10200-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig142.2.1 ID=mRNA_P-littoralis_Contig142.2.1|Name=mRNA_P-littoralis_Contig142.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1245bp|location=Sequence derived from alignment at P-littoralis_Contig142:8956..10200- (Pylaiella littoralis U1_48)
GCCCGGACAGCCGCCGCCGCCACGAAGGAGAGTCGGACGGTGGCCATTGG
AGTCGTTCGGGTTCATCCACCCCATCAAAAAGGCAAGTGGATGAAGTGTT
TGTGCATTCTGGTGTGCCAGTTTCGGGTGCGGGTAGTGTGTCGTCGGTCG
TGCTGCCGTTGGAGACGGGTTTGGTTGATACCCGTTCACGTCCTGCCGCG
TCGCTCGCTTTTCGTTTTGCCCAAATGCAAATCGACGATCACGTCCGCAC
CCTGCAGAACCTACCCGATGCACACACTGAACAGCCTTTCACTCCGCAGC
CACACCCGGCAGCACCACACACCCCTTCTCCATCACCCCATCCCGAACAA
CTCCAGTTGTTAACCCTAATATTAGCGTCCATGCAGCACCAGCTTTCTTC
CTCCGCCCCTGTGCCACCACCGCCGTAGCTCCACATGCCACGCGATGCCC
CCCATTCAGTAGCACACCCTCCAACCGCGGTAGACCCAACTGCAGTATCA
CCATCCCCACTACCGTAGCAGTTGTCCCGGCCCTGCCGCTGCCGCCACCG
CCGCTGCAGCCGACGTTGTTATCACCGCAGCAGCCACCGCTGCTGTCCAC
TGCAGTAGATTTTGGGCCGCCACCACCGCCGCCGCCGCAGCAGCCACCAC
GGCCACCCCCACTCCGTTGCTCAGCCTTGGGCTTCTCGATCTGATGAATC
TCTGTCGCAAGCCGCCGTTAGCGTTTGCGCCGATCCCCAGCATACATTGC
ACCACACGTTGCAACACCAACAGCTGCACCAGTTCGATCACAATGAATCC
CGCCGCCGTCAACCGCCGTCAATTGTTCCAAGATGTTCGTGCTCTCCCAT
TGTCATCCACTCGTGCTCATGCCCGCCAAGACGCCTTGGATTTAGATGAC
CGCGAAACCGACCGGCAGCGCAGCCTTCGCATCGGACAACAGATAGACAA
GATTCGGCAGAATGATTTGGAGGGCTTTCATGGTGTTGAGCCTTGCAGCC
CCGAGATGTTCTCTCAATTTGTTGCCTCCCTTCGCAATGTGACCAACGAT
GTGTTGACTTTGAGTGACAGTGAACGAGAGCAATCCATTCTTTCCGAACG
ATGGGCGCCGGGTTGGTCGCATCACTTGCGCAAGCGAGTGCGCAATGGCA
TCCGCAACCCGACTGCCAACGCCGACACTCCTTCGCTTGTCGACGATGTT
TTTCAACAGGCCGCACAGCACAGTTTGAAGCCCGGCAACTTCGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig142:8956..10200-

>mRNA_P-littoralis_Contig142.2.1 ID=mRNA_P-littoralis_Contig142.2.1|Name=mRNA_P-littoralis_Contig142.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=552bp|location=Sequence derived from alignment at P-littoralis_Contig142:8956..10200- (Pylaiella littoralis U1_48)
ATGAATCTCTGTCGCAAGCCGCCGTTAGCGTTTGCGCCGATCCCCAGCAT
ACATTGCACCACACGTTGCAACACCAACAGCTGCACCAGTTCGATCACAA
TGAATCCCGCCGCCGTCAACCGCCGTCAATTGTTCCAAGATGTTCGTGCT
CTCCCATTGTCATCCACTCGTGCTCATGCCCGCCAAGACGCCTTGGATTT
AGATGACCGCGAAACCGACCGGCAGCGCAGCCTTCGCATCGGACAACAGA
TAGACAAGATTCGGCAGAATGATTTGGAGGGCTTTCATGGTGTTGAGCCT
TGCAGCCCCGAGATGTTCTCTCAATTTGTTGCCTCCCTTCGCAATGTGAC
CAACGATGTGTTGACTTTGAGTGACAGTGAACGAGAGCAATCCATTCTTT
CCGAACGATGGGCGCCGGGTTGGTCGCATCACTTGCGCAAGCGAGTGCGC
AATGGCATCCGCAACCCGACTGCCAACGCCGACACTCCTTCGCTTGTCGA
CGATGTTTTTCAACAGGCCGCACAGCACAGTTTGAAGCCCGGCAACTTCG
GA
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