mRNA_P-littoralis_Contig142.140.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig142.140.1
Unique NamemRNA_P-littoralis_Contig142.140.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig142.140.1 vs. uniprot
Match: A0A6H5JS55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS55_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 7.350e-38
Identity = 111/253 (43.87%), Postives = 126/253 (49.80%), Query Frame = 1 
Query:    1 HTKIVPVFALQ-FSCADCSAGGGPSSTKDTC----VSLPQASRRRIGSWGYHSSSSVDRGCASSLGVACEQPDATSITTPASGSRXXXXXXXXRSAVDNHHHYRRLEDDAQGL------DKSNRGPGGATSNDDSRQS--LCCTTDLCNGLEDLRTEGHRRSDEHLRTLMEVNPRKK----------------GGQ---------------DSWDDDSAQATRGARGGSRFSTVLVIVGTFSQVLWLVSRLIE 627
            H   VPV ALQ FSC DCS GG  S+ K  C          SR R     Y SSS VDRGCASSL VACEQ +    +                 AV +H H    E D Q         +S+R   G + ND       +CC+TD+CNGLED R EG RRS EHLRTLME  PRK+                GG+               D  DD+SA+   G  GGSRF+TVLVIVGTFSQVLWLV RLIE
Sbjct:   68 HLGTVPVLALQYFSCTDCSVGGALSAQKQQCPPGETFCAAVSRPRTSPLVYQSSS-VDRGCASSLHVACEQLNPPQSSLARKDIEEKAGKSATTPAVGDHGH---RESDGQNFLPGNSSSRSSRSSDGGSQNDGHHLQPLMCCSTDICNGLEDARREGQRRSGEHLRTLMEGAPRKEVRSSRDSPADGGIVAAGGRGSGVGTAAAVEKRMVDGEDDNSARG--GGVGGSRFATVLVIVGTFSQVLWLVGRLIE 314
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BLAST of mRNA_P-littoralis_Contig142.140.1 vs. uniprot
Match: D8LTZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTZ0_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 2.180e-36
Identity = 108/252 (42.86%), Postives = 122/252 (48.41%), Query Frame = 1 
Query:    1 HTKIVPVFALQ-FSCADCSAGGGPSSTKDTC----VSLPQASRRRIGSWGYHSSSSVDRGCASSLGVACEQPDATSITTPASGSRXXXXXXXXRSAVDNHHHYRRLEDDAQGLDKSNRGPGGATSNDDS-------RQSLCCTTDLCNGLEDLRTEGHRRSDEHLRTLMEVNPRKK----------------GGQ---------------DSWDDDSAQATRGARGGSRFSTVLVIVGTFSQVLWLVSRLIE 627
            H + VPV ALQ FSC DCS GG  S+ K  C          SR R     Y SSS VDRGCASSL VACEQ +    +                 AV +H H    E D Q L   +                   +  LCC+TD CNGLED R EG RRS+EHLR+LME  PRKK                GG+               D  DD+SA+   G  GGSRF+TVLVIVGTFSQVLWLV RLIE
Sbjct:   26 HLRTVPVLALQCFSCTDCSVGGALSAQKQQCPPGEAFCAAVSRPRTSPLVYQSSS-VDRGCASSLNVACEQLNPPQSSLARKEIAEEAGGTATTPAVGDHGH---RESDGQNLRPGSXXXXXXXXXXXXXXXXHHLQPLLCCSTDFCNGLEDARREGQRRSEEHLRSLMEGTPRKKVGFSRGSLADGGIVTAGGRGSGVGTAAAVGERMVDGEDDNSARG--GCEGGSRFATVLVIVGTFSQVLWLVGRLIE 271
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig142.140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JS55_9PHAE7.350e-3843.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTZ0_ECTSI2.180e-3642.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig142contigP-littoralis_Contig142:430477..431747 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size786
Hectar predicted targeting categorysignal anchor
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_003820.1
Cds size162
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789669.288192-UTR-P-littoralis_Contig142:430476..4306321680789669.288192-UTR-P-littoralis_Contig142:430476..430632Pylaiella littoralis U1_48UTRP-littoralis_Contig142 430477..430632 -
1680789669.3124156-UTR-P-littoralis_Contig142:430794..4310351680789669.3124156-UTR-P-littoralis_Contig142:430794..431035Pylaiella littoralis U1_48UTRP-littoralis_Contig142 430795..431035 -
1680789669.3260567-UTR-P-littoralis_Contig142:431070..4312331680789669.3260567-UTR-P-littoralis_Contig142:431070..431233Pylaiella littoralis U1_48UTRP-littoralis_Contig142 431071..431233 -
1680789669.3345735-UTR-P-littoralis_Contig142:431683..4317471680789669.3345735-UTR-P-littoralis_Contig142:431683..431747Pylaiella littoralis U1_48UTRP-littoralis_Contig142 431684..431747 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789669.303465-CDS-P-littoralis_Contig142:430632..4307941680789669.303465-CDS-P-littoralis_Contig142:430632..430794Pylaiella littoralis U1_48CDSP-littoralis_Contig142 430633..430794 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig142.140.1prot_P-littoralis_Contig142.140.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig142 430633..430794 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig142.140.1

>prot_P-littoralis_Contig142.140.1 ID=prot_P-littoralis_Contig142.140.1|Name=mRNA_P-littoralis_Contig142.140.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=54bp
MEVNPRKKGGQDSWDDDSAQATRGARGGSRFSTVLVIVGTFSQVLWLVSR
LIE*
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mRNA from alignment at P-littoralis_Contig142:430477..431747-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig142.140.1 ID=mRNA_P-littoralis_Contig142.140.1|Name=mRNA_P-littoralis_Contig142.140.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1271bp|location=Sequence derived from alignment at P-littoralis_Contig142:430477..431747- (Pylaiella littoralis U1_48)
CACACCAAAATAGTGCCGGTGTTTGCTCTGCAATTCTCGTGCGCTGATTG
TTCTGCGGGAGGCGGTGAAAAAAACAAGACAGACAGCGACGGAGACGATG
TTAGTTTACCACAAATATGTGATGTCTCAATATTTGCAGGGGAGTAGAAC
TGCTGGAAGCACTTGATTAGCCATGCACCTTATGTGTCTACATATAGGTA
ATGCAGTAATACATATATATACGCATAAACATACATGCGTATGGTAGCTT
CGTAGCGTTATGATTTTCCGACGCGAAAACTCAACGACGAAGCTGGGGAT
CATTGTTGGCTACGATTGAGGAGGGAATTACGTCTTCGCACATTTCTCGT
GGAACCCGTAGATACATGTCCCCAAGGTAACATGTGTGGGCAATAAAACG
AAAATGAAAATAAATAAAACTGTGTTACCCCGGCTGGTGCACCCACTTCA
TACCAAAAGGTATCGACCGGTGCCCAGAATAACTGGGACGAACAAACACA
CATTCCTGGCTTAGGACCTTCATCAACGAAGGACACTTGTGTTTCTTTAC
CTCAGGCGTCTCGGCGGCGGATCGGAAGTTGGGGCTATCACTCCTCCTCT
TCTGTCGATCGCGGCTGCGCCTCGTCGCTAGGTGTGGCGTGCGAGCAACC
GGACGCCACATCAATAACAACACCAGCGTCAATCGTTCCAGAATTTGCAG
CGGCAGAAGCAGCAGTGGCAGCAGAGGCAGCAGAGGCAGCAAAGGCAGTA
GAAGCGCCGTGGATAATCACCATCATTACCGTCGTCTTGAAGACGACGCC
CAAGGTTTGGATAAGAGTAACAGGGGCCCTGGCGGTGCCACGAGTAACGA
TGACTCGCGACAATCGCTCTGCTGCACAACAGACCTGTGCAACGGCTTGG
AGGACTTGCGGACGGAGGGGCACCGCCGATCGGACGAGCACCTGCGGACT
CTCATGGAGGTTAACCCTCGGAAGAAAGGTGGTCAGGACTCTTGGGACGA
CGACTCTGCGCAGGCGACGCGAGGGGCGAGGGGAGGGTCGCGGTTCTCGA
CAGTGCTTGTGATTGTTGGAACGTTTTCGCAGGTGCTGTGGCTGGTGAGC
AGGCTGATAGAGTGAATGATCATGTTTTGAGTAAGATAGGAGAGTGATAG
AAAAGTGGTTGAGTTATGGCTGCAAGTCGAATAGAAATATAGCAGAAAAC
TAGATTAAGCGTAGATTGCATGGTAGCCGGAAGTAAAGAGAGGTGTCGTA
CCCGAAGTTTTTCGATTCACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig142:430477..431747-

>mRNA_P-littoralis_Contig142.140.1 ID=mRNA_P-littoralis_Contig142.140.1|Name=mRNA_P-littoralis_Contig142.140.1|organism=Pylaiella littoralis U1_48|type=CDS|length=162bp|location=Sequence derived from alignment at P-littoralis_Contig142:430477..431747- (Pylaiella littoralis U1_48)
ATGGAGGTTAACCCTCGGAAGAAAGGTGGTCAGGACTCTTGGGACGACGA
CTCTGCGCAGGCGACGCGAGGGGCGAGGGGAGGGTCGCGGTTCTCGACAG
TGCTTGTGATTGTTGGAACGTTTTCGCAGGTGCTGTGGCTGGTGAGCAGG
CTGATAGAGTGA
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