mRNA_P-littoralis_Contig142.127.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig142.127.2
Unique NamemRNA_P-littoralis_Contig142.127.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig142.127.2 vs. uniprot
Match: A0A6H5JSB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSB0_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 8.680e-6
Identity = 28/63 (44.44%), Postives = 34/63 (53.97%), Query Frame = 1 
Query:    1 MFGAGRGFRGFRPRNSTSQGVHLGILTVIGVTS------EASTSVYARADAVPLGEKVKVKRG 171
            MFG  RGFRGFRPRNST Q +H+  LTV+GV +      E   +  A   A   GE+     G
Sbjct:    1 MFGRSRGFRGFRPRNSTHQALHVATLTVVGVVTGYYIFNEPLKTAVAEVKAKEAGERAAAGGG 63
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig142.127.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JSB0_9PHAE8.680e-644.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig142contigP-littoralis_Contig142:406639..407724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size358
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-12_003850.1
Cds size216
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789664.6014194-UTR-P-littoralis_Contig142:406638..4067801680789664.6014194-UTR-P-littoralis_Contig142:406638..406780Pylaiella littoralis U1_48UTRP-littoralis_Contig142 406639..406780 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789664.6134539-CDS-P-littoralis_Contig142:406780..4068961680789664.6134539-CDS-P-littoralis_Contig142:406780..406896Pylaiella littoralis U1_48CDSP-littoralis_Contig142 406781..406896 -
1680789664.6254485-CDS-P-littoralis_Contig142:407624..4077241680789664.6254485-CDS-P-littoralis_Contig142:407624..407724Pylaiella littoralis U1_48CDSP-littoralis_Contig142 407625..407724 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig142.127.2prot_P-littoralis_Contig142.127.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig142 406781..407724 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig142.127.2

>prot_P-littoralis_Contig142.127.2 ID=prot_P-littoralis_Contig142.127.2|Name=mRNA_P-littoralis_Contig142.127.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=72bp
MFGAGRGFRGFRPRNSTSQGVHLGILTVIGVTSEASTSVYARADAVPLGE
KVKVKRGACRLPNHVPGYNGA*
back to top

mRNA from alignment at P-littoralis_Contig142:406639..407724-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig142.127.2 ID=mRNA_P-littoralis_Contig142.127.2|Name=mRNA_P-littoralis_Contig142.127.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1086bp|location=Sequence derived from alignment at P-littoralis_Contig142:406639..407724- (Pylaiella littoralis U1_48)
ATGTTTGGCGCGGGCCGCGGCTTCCGCGGTTTTCGCCCACGAAATAGCAC
TAGCCAGGGCGTCCACCTCGGAATCCTTACTGTTATAGGAGTGACGTCGG
GTGAGCATCGTTATGTGTAAGAATATTTTCGACCTCAGTCACATCAACAA
TTGGTTTCTGCTGCGTACTGCTACTATTGACTCGTACTCGTGTGTGCTGT
TATCCGTAAAACTCGTACTCGCCAGAAATTGGCACATTAATCTACTGCTG
TACTCTGTGCTGCCGTGTATAAAGTGCTGTATGATAGGTTGAAGGGGGGG
GGCGTGCTGCGCCTTGTTTGGACTCAGAGGTACCAGCGTATTTACGTACT
GCTGTGGTAGATGAGGTAAAAGTAGTGTCAGTCAGCGCCAGTCAGGTTCC
GAGGCGTCCAAAATGCTTGTTGAAGGTGTCGGGGAAAAGGGGGAAATGTC
CCTCGTGTGTAAGACATTAGACGGACAATGACCTACGCCGCACACCCTGT
ACTTTATGACCGGACTTCGGTTACTGCTGTATTGGTGAGAAAAATCGGGT
TTGGGAGGGGAGGGGTATCACAGTTGCTGTACGTGCACCAATTCTACAAA
CGACCAGGACGACGATGGAACGCTAGCGGTAGCAGTAGGAGGGGGGGGCG
AGGGGGGGGGGGGGCACGGCTCTTTCCTTTTTTGGTGAGCGGCGAGCCCG
TGTTGGTAGTGTACACAACGCCGTCGAGCCTGGAAAAAGTGATCGTGATC
ATGAAGGCTAAGCAAGGCATACGGCACCACCCCGCCCTGTACGCGCATGT
CCAATTTTTTTTTGCCGTCACTTCGAAGAAGCAAGTACTTCTGTGTATGC
ACGTGCTGATGCGGTTCCACTCGGGGAGAAGGTCAAGGTGAAGCGTGGCG
CGTGTAGACTACCAAACCACGTACCAGGTTACAACGGAGCATAATTTCGT
TACTCGTGTGTGCACCCTCGGCGATCATTTTTTACTCCCCTTTCCACAAC
TGAATCTTCGTTTCTTATATATTGCTTCGCTAATTAGTGAATCGGTATGG
AGAAACGTTTTGATTATACTGCTGTTGTACTCTGGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig142:406639..407724-

>mRNA_P-littoralis_Contig142.127.2 ID=mRNA_P-littoralis_Contig142.127.2|Name=mRNA_P-littoralis_Contig142.127.2|organism=Pylaiella littoralis U1_48|type=CDS|length=216bp|location=Sequence derived from alignment at P-littoralis_Contig142:406639..407724- (Pylaiella littoralis U1_48)
ATGTTTGGCGCGGGCCGCGGCTTCCGCGGTTTTCGCCCACGAAATAGCAC
TAGCCAGGGCGTCCACCTCGGAATCCTTACTGTTATAGGAGTGACGTCGG
AAGCAAGTACTTCTGTGTATGCACGTGCTGATGCGGTTCCACTCGGGGAG
AAGGTCAAGGTGAAGCGTGGCGCGTGTAGACTACCAAACCACGTACCAGG
TTACAACGGAGCATAA
back to top