mRNA_P-littoralis_Contig1328.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1328.8.1
Unique NamemRNA_P-littoralis_Contig1328.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1328.8.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 3.300e-35
Identity = 64/108 (59.26%), Postives = 83/108 (76.85%), Query Frame = 1 
Query:   10 GAAFAATVSADIWHRRLGHLNPGSMDLLRKKEGNGIEYADSMSACDICALSKSRQQAHPKTAENKTTGPMDLVGTDLMGPFSPPAKGGFRFAAKYTDYHTHMKEVFLL 333
            G A AATV+A+ WHR L HLN  SM+LLRKKE NG++++DSM+ CDICA+SKSRQ AHP+    +TT PM LV TD MG  +P AKGGF + +K+TD ++ MKE++LL
Sbjct:  299 GVACAATVNANTWHRWLRHLNFRSMELLRKKEDNGVDFSDSMTPCDICAISKSRQLAHPEKTNRETTAPMQLVYTDNMGKTTPLAKGGFGYVSKFTDAYSWMKEIYLL 406
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BLAST of mRNA_P-littoralis_Contig1328.8.1 vs. uniprot
Match: A0A6H5JT61_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT61_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 2.220e-32
Identity = 61/108 (56.48%), Postives = 80/108 (74.07%), Query Frame = 1 
Query:   10 GAAFAATVSADIWHRRLGHLNPGSMDLLRKKEGNGIEYADSMSACDICALSKSRQQAHPKTAENKTTGPMDLVGTDLMGPFSPPAKGGFRFAAKYTDYHTHMKEVFLL 333
            G AFA TV+A+  HRRLGHLN  SM LLRKKE N ++++DSM+ CDICA+SKS Q AHPK    +TT PM LV TD+MG  +P AKGGF + + + D ++ +KE++LL
Sbjct:   97 GVAFATTVNANTPHRRLGHLNFRSMKLLRKKEENEVDFSDSMTPCDICAISKSTQLAHPKKTSRETTAPMLLVYTDIMGKTTPLAKGGFGYVSMFNDAYSRIKEIYLL 204
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BLAST of mRNA_P-littoralis_Contig1328.8.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 4.780e-32
Identity = 57/111 (51.35%), Postives = 75/111 (67.57%), Query Frame = 1 
Query:    1 DLPGAAFAATVSADIWHRRLGHLNPGSMDLLRKKEGNGIEYADSMSACDICALSKSRQQAHPKTAENKTTGPMDLVGTDLMGPFSPPAKGGFRFAAKYTDYHTHMKEVFLL 333
            ++ G A     SA +WHRR+GH++  S+D+LRK +GNG+EY   +SACD+CA+  S+QQ HPK A    + P  LV TDLMGPFSPPA GGF +  K+ D H    EVFL+
Sbjct:  255 EISGVALPVK-SAALWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIKWNEVFLM 364
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BLAST of mRNA_P-littoralis_Contig1328.8.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 1.710e-30
Identity = 55/104 (52.88%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:   31 VSADIWHRRLGHLNPGSMDLLRKKEGNGIEYADSMSACDICALSKSRQQAHPKTAENKTTGPMDLVGTDLMGPFSPPAK---GGFRFAAKYTDYHTHMKEVFLL 333
            VSAD WHRRLGHLN  S+D+LRK  G G++Y DS+S C +C ++K +Q  HPK +  + + P  LV  D MGP +PPAK   G F +A K TD +T MKEV+LL
Sbjct:   40 VSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLL 143
[Close]
BLAST of mRNA_P-littoralis_Contig1328.8.1 vs. uniprot
Match: A0A6H5JFQ6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFQ6_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 3.970e-29
Identity = 55/104 (52.88%), Postives = 73/104 (70.19%), Query Frame = 1 
Query:   31 VSADIWHRRLGHLNPGSMDLLRKKEGNGIEYADSMSACDICALSKSRQQAHPKTAENKTTGPMDLVGTDLMGPFSPPAK---GGFRFAAKYTDYHTHMKEVFLL 333
            V+AD WHRRLGHLN  S+D+LRK  G G++Y DS+S C +C ++K +Q +HPK + ++ + P  LV  D MGP +PPAK   G F +A K TD HT MKEV+LL
Sbjct:   40 VTADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSSHPKQSTHELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDHTKMKEVYLL 143
[Close]
BLAST of mRNA_P-littoralis_Contig1328.8.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 1.710e-28
Identity = 55/104 (52.88%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:   31 VSADIWHRRLGHLNPGSMDLLRKKEGNGIEYADSMSACDICALSKSRQQAHPKTAENKTTGPMDLVGTDLMGPFSPPAK---GGFRFAAKYTDYHTHMKEVFLL 333
            VSAD WHRRLGHLN  S+D+LRK  G G++Y DS+S C +C ++K +Q  HPK +  + + P  LV  D MGP +PPAK   G F +A K TD +T MKEV+LL
Sbjct:   40 VSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLL 143
[Close]
BLAST of mRNA_P-littoralis_Contig1328.8.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 2.400e-28
Identity = 55/104 (52.88%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:   31 VSADIWHRRLGHLNPGSMDLLRKKEGNGIEYADSMSACDICALSKSRQQAHPKTAENKTTGPMDLVGTDLMGPFSPPAK---GGFRFAAKYTDYHTHMKEVFLL 333
            VSAD WHRRLGHLN  S+D+LRK  G G++Y DS+S C +C ++K +Q  HPK +  + + P  LV  D MGP +PPAK   G F +A K TD +T MKEV+LL
Sbjct:  416 VSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLL 519
[Close]
BLAST of mRNA_P-littoralis_Contig1328.8.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 2.520e-28
Identity = 55/104 (52.88%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:   31 VSADIWHRRLGHLNPGSMDLLRKKEGNGIEYADSMSACDICALSKSRQQAHPKTAENKTTGPMDLVGTDLMGPFSPPAK---GGFRFAAKYTDYHTHMKEVFLL 333
            VSAD WHRRLGHLN  S+D+LRK  G G++Y DS+S C +C ++K +Q  HPK +  + + P  LV  D MGP +PPAK   G F +A K TD +T MKEV+LL
Sbjct:   40 VSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLL 143
[Close]
BLAST of mRNA_P-littoralis_Contig1328.8.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 2.550e-28
Identity = 55/104 (52.88%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:   31 VSADIWHRRLGHLNPGSMDLLRKKEGNGIEYADSMSACDICALSKSRQQAHPKTAENKTTGPMDLVGTDLMGPFSPPAK---GGFRFAAKYTDYHTHMKEVFLL 333
            VSAD WHRRLGHLN  S+D+LRK  G G++Y DS+S C +C ++K +Q  HPK +  + + P  LV  D MGP +PPAK   G F +A K TD +T MKEV+LL
Sbjct:   40 VSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLL 143
[Close]
BLAST of mRNA_P-littoralis_Contig1328.8.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 2.590e-28
Identity = 55/104 (52.88%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:   31 VSADIWHRRLGHLNPGSMDLLRKKEGNGIEYADSMSACDICALSKSRQQAHPKTAENKTTGPMDLVGTDLMGPFSPPAK---GGFRFAAKYTDYHTHMKEVFLL 333
            VSAD WHRRLGHLN  S+D+LRK  G G++Y DS+S C +C ++K +Q  HPK +  + + P  LV  D MGP +PPAK   G F +A K TD +T MKEV+LL
Sbjct:   40 VSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLL 143
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1328.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYD3_9PHAE3.300e-3559.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT61_9PHAE2.220e-3256.48Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1J1_9PHAE4.780e-3251.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ34_9PHAE1.710e-3052.88Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JFQ6_9PHAE3.970e-2952.88Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCM0_9PHAE1.710e-2852.88Integrase catalytic domain-containing protein n=5 ... [more]
A0A6H5KT84_9PHAE2.400e-2852.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K500_9PHAE2.520e-2852.88Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1R7_9PHAE2.550e-2852.88Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JJR8_9PHAE2.590e-2852.88Integrase catalytic domain-containing protein n=11... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1328contigP-littoralis_Contig1328:32225..32557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7070.TC015470-PA
Preferred nameFHDC1
PFAMsDrf_FH3,FH2
Model size333
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
GOsGO:0001763,GO:0002009,GO:0002064,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0005884,GO:0007275,GO:0007424,GO:0008092,GO:0008150,GO:0009653,GO:0009888,GO:0009987,GO:0015629,GO:0030154,GO:0030855,GO:0031110,GO:0031113,GO:0031941,GO:0032092,GO:0032271,GO:0032501,GO:0032502,GO:0032886,GO:0032991,GO:0033043,GO:0035146,GO:0035147,GO:0035150,GO:0035239,GO:0035295,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043393,GO:0044087,GO:0044093,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0048468,GO:0048729,GO:0048731,GO:0048754,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051098,GO:0051099,GO:0051128,GO:0051493,GO:0060429,GO:0060446,GO:0060541,GO:0060562,GO:0061138,GO:0065007,GO:0065008,GO:0065009,GO:0070507,GO:0090066,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:1902903,GO:1904529,GO:1904531,GO:1904616,GO:1904618
Exons1
Evalue6.07e-12
EggNOG OGsCOG2801@1|root,KOG1922@1|root,KOG0017@2759|Eukaryota,KOG1922@2759|Eukaryota,38C7D@33154|Opisthokonta,3BDNK@33208|Metazoa,3CX9J@33213|Bilateria,41VES@6656|Arthropoda,3SHX8@50557|Insecta
DescriptionActin binding. It is involved in the biological process described with cellular component organization
Cds size333
COG categoryTZ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789607.7886112-CDS-P-littoralis_Contig1328:32224..325571680789607.7886112-CDS-P-littoralis_Contig1328:32224..32557Pylaiella littoralis U1_48CDSP-littoralis_Contig1328 32225..32557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1328.8.1prot_P-littoralis_Contig1328.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1328 32225..32557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1328.8.1

>prot_P-littoralis_Contig1328.8.1 ID=prot_P-littoralis_Contig1328.8.1|Name=mRNA_P-littoralis_Contig1328.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=111bp
DLPGAAFAATVSADIWHRRLGHLNPGSMDLLRKKEGNGIEYADSMSACDI
CALSKSRQQAHPKTAENKTTGPMDLVGTDLMGPFSPPAKGGFRFAAKYTD
YHTHMKEVFLL
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mRNA from alignment at P-littoralis_Contig1328:32225..32557+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1328.8.1 ID=mRNA_P-littoralis_Contig1328.8.1|Name=mRNA_P-littoralis_Contig1328.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=333bp|location=Sequence derived from alignment at P-littoralis_Contig1328:32225..32557+ (Pylaiella littoralis U1_48)
GACCTTCCTGGGGCCGCCTTCGCTGCGACTGTGAGCGCGGACATCTGGCA
CCGACGACTCGGTCATCTCAATCCCGGCAGCATGGACCTACTGCGTAAAA
AGGAAGGTAACGGCATTGAATATGCTGACTCCATGTCGGCTTGCGACATT
TGCGCCCTGAGCAAGAGCCGCCAACAAGCTCACCCCAAGACCGCGGAAAA
CAAGACAACTGGACCAATGGATCTCGTAGGCACGGACCTCATGGGCCCTT
TCTCCCCTCCAGCTAAAGGGGGCTTCCGCTTCGCCGCCAAGTACACGGAC
TACCACACCCACATGAAGGAGGTCTTCCTGCTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1328:32225..32557+

>mRNA_P-littoralis_Contig1328.8.1 ID=mRNA_P-littoralis_Contig1328.8.1|Name=mRNA_P-littoralis_Contig1328.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=333bp|location=Sequence derived from alignment at P-littoralis_Contig1328:32225..32557+ (Pylaiella littoralis U1_48)
GACCTTCCTGGGGCCGCCTTCGCTGCGACTGTGAGCGCGGACATCTGGCA
CCGACGACTCGGTCATCTCAATCCCGGCAGCATGGACCTACTGCGTAAAA
AGGAAGGTAACGGCATTGAATATGCTGACTCCATGTCGGCTTGCGACATT
TGCGCCCTGAGCAAGAGCCGCCAACAAGCTCACCCCAAGACCGCGGAAAA
CAAGACAACTGGACCAATGGATCTCGTAGGCACGGACCTCATGGGCCCTT
TCTCCCCTCCAGCTAAAGGGGGCTTCCGCTTCGCCGCCAAGTACACGGAC
TACCACACCCACATGAAGGAGGTCTTCCTGCTG
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