mRNA_P-littoralis_Contig1226.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1226.2.1
Unique NamemRNA_P-littoralis_Contig1226.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1226.2.1 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 6.870e-11
Identity = 32/80 (40.00%), Postives = 47/80 (58.75%), Query Frame = 1 
Query:    1 CSFEKVFGSVRGMLPATA-PGRNTPNWIQNLPRLDRYATALIPERLRHIWEAWFVETDGNCLWRALAKALWDCDQFWPHL 237
            C++ KVFG+  G++P  A PG+    +       D  AT ++   LR  + A +VE DGNC WR++AKALW  D++W  L
Sbjct:   60 CTWPKVFGTPEGVVPTVARPGKGQEMY-------DPKATMILTPELRKTFVALWVEGDGNCFWRSMAKALWGTDEYWRQL 132
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1226.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJS4_9PHAE6.870e-1140.00SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1226contigP-littoralis_Contig1226:7239..7990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size239
Hectar predicted targeting categoryother localisation
Exons2
Cds size237
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789531.4113338-CDS-P-littoralis_Contig1226:7239..74041680789531.4113338-CDS-P-littoralis_Contig1226:7239..7404Pylaiella littoralis U1_48CDSP-littoralis_Contig1226 7240..7404 -
1680789531.422391-CDS-P-littoralis_Contig1226:7918..79901680789531.422391-CDS-P-littoralis_Contig1226:7918..7990Pylaiella littoralis U1_48CDSP-littoralis_Contig1226 7919..7990 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1226.2.1prot_P-littoralis_Contig1226.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1226 7240..7990 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1226.2.1

>prot_P-littoralis_Contig1226.2.1 ID=prot_P-littoralis_Contig1226.2.1|Name=mRNA_P-littoralis_Contig1226.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=79bp
CSFEKVFGSVRGMLPATAPGRNTPNWIQNLPRLDRYATALIPERLRHIWE
AWFVETDGNCLWRALAKALWDCDQFWPHL
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mRNA from alignment at P-littoralis_Contig1226:7239..7990-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1226.2.1 ID=mRNA_P-littoralis_Contig1226.2.1|Name=mRNA_P-littoralis_Contig1226.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=752bp|location=Sequence derived from alignment at P-littoralis_Contig1226:7239..7990- (Pylaiella littoralis U1_48)
TGTTCGTTTGAGAAGGTCTTCGGCTCTGTCCGTGGGATGCTACCGGCCAC
CGCACCCGGCAGGAATACGCCGGTAAGCGAATCGTTGCAACTGTGCTATC
GTAAACTCTGTTGGTGTATTTTTACGATTCCGCTCGTTTAAAGGCCACGA
GGCTGGATTTGGTTGGTTGATTGAGCTGGGTTGATTTGGTTGAGTTGGTT
AGAGGGTTAAATGAAATTGGGTTTGTACAGGAGTGGCGTTGCGCCAAATA
CGAAACGGCTTGAATATGTTACGTTAGATTGAGTCAAGCGTGTAAATATC
ACGGAGCGGGCGCCCTTCCCAGCGTGGCCATCAGACATTGTGTTCGCTGT
TGCCAAGGTGCTAGTAACTTAAAATGAACCCCACCGCGTAGCGCGAATAA
GAACGGTGTCAGCGGCAACTGTTGTAATTCGTGGCTTTGTGTAGACCGCC
TACCTGTTCGATAGAATCAATTTATTGGGAATGATTATTCCATGTTCTGG
GAGGCATATTCGTACAACAGGATTTTGTCGCGAGGCAGAGCGTTTCGCTG
AACCTTTTCTGCCCCTGCCTCCGAACCCTGCCCCAGAACTGGATCCAGAA
TCTACCACGGTTGGACCGGTACGCAACGGCGCTTATCCCAGAACGGCTGC
GCCACATTTGGGAAGCGTGGTTTGTCGAAACCGACGGAAACTGCTTGTGG
CGTGCCCTCGCCAAGGCCTTGTGGGATTGCGACCAGTTTTGGCCCCATTT
GA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1226:7239..7990-

>mRNA_P-littoralis_Contig1226.2.1 ID=mRNA_P-littoralis_Contig1226.2.1|Name=mRNA_P-littoralis_Contig1226.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=237bp|location=Sequence derived from alignment at P-littoralis_Contig1226:7239..7990- (Pylaiella littoralis U1_48)
TGTTCGTTTGAGAAGGTCTTCGGCTCTGTCCGTGGGATGCTACCGGCCAC
CGCACCCGGCAGGAATACGCCGAACTGGATCCAGAATCTACCACGGTTGG
ACCGGTACGCAACGGCGCTTATCCCAGAACGGCTGCGCCACATTTGGGAA
GCGTGGTTTGTCGAAACCGACGGAAACTGCTTGTGGCGTGCCCTCGCCAA
GGCCTTGTGGGATTGCGACCAGTTTTGGCCCCATTTG
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