mRNA_P-littoralis_Contig121.70.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig121.70.1
Unique NamemRNA_P-littoralis_Contig121.70.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig121.70.1 vs. uniprot
Match: D8LEJ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEJ2_ECTSI)

HSP 1 Score: 212 bits (540), Expect = 5.740e-62
Identity = 118/184 (64.13%), Postives = 140/184 (76.09%), Query Frame = 1 
Query:   34 LGLATRRASGAVRNLSAWLSLAAVIIVLVAAGESHAFVAPSASLPLAGASSAVSNTSGHERGGNTRPSXXXXXXXXXGCLAMSADGGATPAGPTKMAAVLYTYVDGMEEKRAPHRSGHLDLLKNMSEEGSCLLGGALVEPCDGGIVLFSTPEKAREFVDNDPYVSSGLVTKYQIRDYMAVVGTM 585
            LG+A+R   G VRN SAWL+LA   +V + AG   AFVAPSASLPLAG S AVS   GH RG +TRP+         G L+MSADG AT   P K+AAV+YTYVDGM +KR P+R+ HLDLLK M+EEG+CLLGGA +EPCDG ++LFS+PEKA++FVD DPY + GLVTKYQIRDYMAVVGTM
Sbjct:   10 LGVASR---GTVRNFSAWLALA---LVALTAGVCDAFVAPSASLPLAGGS-AVSKIDGHSRGCSTRPNSSGS-----GSLSMSADGSATKGEPAKLAAVVYTYVDGMVDKRGPYRTDHLDLLKAMTEEGTCLLGGAFLEPCDGAVLLFSSPEKAQQFVDKDPYNTGGLVTKYQIRDYMAVVGTM 181
[Close]
BLAST of mRNA_P-littoralis_Contig121.70.1 vs. uniprot
Match: A0A6S9EHW5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9EHW5_HETAK)

HSP 1 Score: 111 bits (277), Expect = 4.640e-25
Identity = 54/104 (51.92%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:  283 ADGGATPAGPTKMAAVLYTYVDGMEEKRAPHRSGHLDLLKNMSEEGSCLLGGALVEPCDGGIVLFSTPEKAREFVDNDPYVSSGLVTKYQIRDYMAVVGTMHTK 594
            A+    PA P K+ AV YTYV+ MEE+R   R+ HL+L+K     G+C++GGA +EP DGG +LF T E AREFV  DPYV +GLV  + IR YM V GT   K
Sbjct:   41 AENEPAPALPKKLFAVRYTYVENMEERRGAVRAPHLELIKEYEAAGTCVMGGAFIEPVDGGFLLFETEEAAREFVSRDPYVEAGLVPHHDIRAYMCVSGTAFNK 144
[Close]
BLAST of mRNA_P-littoralis_Contig121.70.1 vs. uniprot
Match: A9UWG7_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UWG7_MONBE)

HSP 1 Score: 103 bits (257), Expect = 1.770e-22
Identity = 47/104 (45.19%), Postives = 67/104 (64.42%), Query Frame = 1 
Query:  277 MSADGGATPAGPTKMAAVLYTYVDGMEEKRAPHRSGHLDLLKNMSEEGSCLLGGALVEPCDGGIVLFSTPEKAREFVDNDPYVSSGLVTKYQIRDYMAVVGTMH 588
            M+   G   A P  +A + Y +V+ M EKR PHRS HL L ++ +  GS LLGGA   P D G ++F +P++AREF + DPYV   LV KY+IR++  VVG+++
Sbjct:   24 MTQGDGTAAATPVPLAVLKYFFVENMAEKRVPHRSAHLQLARDAARRGSLLLGGAAANPVDAGFLIFRSPQEAREFAEQDPYVRGELVRKYEIREWSVVVGSLY 127
[Close]
BLAST of mRNA_P-littoralis_Contig121.70.1 vs. uniprot
Match: A0A835ZJU7_9STRA (YCII domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJU7_9STRA)

HSP 1 Score: 101 bits (251), Expect = 4.330e-22
Identity = 44/84 (52.38%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:  334 YTYVDGMEEKRAPHRSGHLDLLKNMSEEGSCLLGGALVEPCDGGIVLFSTPEKAREFVDNDPYVSSGLVTKYQIRDYMAVVGTM 585
            YTYV+GM EKR PHR  HL +L  ++++G C+LGGA + P DG ++LF T   A  F   DPY  +GL+TK+ IRDY AV GT+
Sbjct:    8 YTYVEGMLEKRGPHRDAHLQMLGELTQKGECVLGGAFMNPADGAMLLFQTRAAAETFAAQDPYSKAGLITKFNIRDYDAVTGTI 91
[Close]
BLAST of mRNA_P-littoralis_Contig121.70.1 vs. uniprot
Match: A0A059LFT5_9CHLO (YCII domain-containing protein n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LFT5_9CHLO)

HSP 1 Score: 91.7 bits (226), Expect = 2.690e-18
Identity = 43/86 (50.00%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:  328 VLYTYVDGMEEKRAPHRSGHLDLLKNMSEEGSCLLGGALVEPCDGGIVLFS--TPEKAREFVDNDPYVSSGLVTKYQIRDYMAVVG 579
            ++Y YVDGM EKR P R  HL L   MS+EG  ++GGAL +P D GI++F   T E+   F   DPYV + LVT +++R YM+VVG
Sbjct:   44 LIYNYVDGMLEKRTPFRDAHLKLAGGMSDEGKLMMGGALTDPVDTGILIFRNMTKEEVESFAKRDPYVLNNLVTSWKVRQYMSVVG 129
[Close]
BLAST of mRNA_P-littoralis_Contig121.70.1 vs. uniprot
Match: A0A7S0EWB9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EWB9_9EUKA)

HSP 1 Score: 90.5 bits (223), Expect = 3.200e-18
Identity = 46/106 (43.40%), Postives = 63/106 (59.43%), Query Frame = 1 
Query:  328 VLYTYVDGMEEKRAPHRSGHLDLLKNMSEEGSCLLGGALVEPCDGGIVLFSTP-EKAREFVDNDPYVSSGLVTKYQIRDYMAVVGTMHTK*RPVASSDLESPRPLA 642
            +LYTY D   EKRAPHRS HL   +   + G  LLGGAL +P DGG++LF+   E A  F  +DPY  +G+VT + +R++  VVG+M  +        L +P P A
Sbjct:    4 LLYTYTDNALEKRAPHRSAHLAAARAAEQRGQLLLGGALADPLDGGVLLFAGGREVAEAFATSDPYTQNGIVTDWTVREWTVVVGSMFAQ--------LPAPPPFA 101
[Close]
BLAST of mRNA_P-littoralis_Contig121.70.1 vs. uniprot
Match: A0A3B9ZKB7_9BACT (YCII domain-containing protein n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=A0A3B9ZKB7_9BACT)

HSP 1 Score: 87.4 bits (215), Expect = 2.670e-17
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:  328 VLYTYVDGMEEKRAPHRSGHLDLLKNMSEEGSCLLGGALVEPCDGGIVLFS--TPEKAREFVDNDPYVSSGLVTKYQIRDYMAVVG 579
            + Y  VD   E+RAP+R+ HL L +   + GS  +GGAL +P DG +++F   TPE A +F  NDPYV +GL+T +Q+R +M V+G
Sbjct:    5 LFYKTVDNYIERRAPYRTEHLGLAQQAVDNGSLFMGGALADPADGAVLIFKGDTPEVAEQFAKNDPYVKNGLITDWQVRPWMVVIG 90
[Close]
BLAST of mRNA_P-littoralis_Contig121.70.1 vs. uniprot
Match: L8HGR4_ACACA (YCIIrelated domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HGR4_ACACA)

HSP 1 Score: 87.4 bits (215), Expect = 2.440e-16
Identity = 49/112 (43.75%), Postives = 69/112 (61.61%), Query Frame = 1 
Query:  265 GCLAMSADGGAT---PAGPT--KMAAVLYTYVDGMEEKRAPHRSGHLDLLKNMSEEGSCLLGGALVEPCDGGIVLFS-TPEKAREFVDNDPYVSSGLVTKYQIRDYMAVVGT 582
            G    S   GAT    A PT  K+ A++YTYVDG+ EKRAPHR+ HL  +K   ++G  + GGA  +   G IVL + T +    F  +DPYV +GLVT++++R ++ VVGT
Sbjct:   56 GARVFSTASGATGTPAAAPTVDKLHALMYTYVDGILEKRAPHRAAHLAYVKQYEDDGRLVAGGAWEDASGGLIVLRTDTADDVHRFAHDDPYVKAGLVTRHEVRPWLVVVGT 167
[Close]
BLAST of mRNA_P-littoralis_Contig121.70.1 vs. uniprot
Match: A0A8K1FKV5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FKV5_PYTOL)

HSP 1 Score: 83.6 bits (205), Expect = 6.930e-16
Identity = 44/96 (45.83%), Postives = 58/96 (60.42%), Query Frame = 1 
Query:  295 ATPAGPTKMAAVLYTYVDGMEEKRAPHRSGHLDLLKNMSEEGSCLLGGALVEPCDGGIVLFSTPEKAR--EFVDNDPYVSSGLVTKYQIRDYMAVV 576
            AT AG  K   + Y YV  + EKR P R+ HL    ++  +G  L+GGALV+P D G+ +FST  KA   EFV NDPYV + LVT + IR++   V
Sbjct:    2 ATSAGDKKFYILRYDYVSDILEKRTPFRAEHLQNAVDLKAQGKILMGGALVDPVDTGLFIFSTDNKAEIEEFVANDPYVKNNLVTAHSIREWAVAV 97
[Close]
BLAST of mRNA_P-littoralis_Contig121.70.1 vs. uniprot
Match: A0A2K1K357_PHYPA (YCII domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1K357_PHYPA)

HSP 1 Score: 84.7 bits (208), Expect = 3.870e-15
Identity = 42/91 (46.15%), Postives = 58/91 (63.74%), Query Frame = 1 
Query:  325 AVLYTYVDGMEEKRAPHRSGHLDLLKNMSEEGSCLLGGALVEPCDGGIVLF--STPEKAREFVDNDPYVSSGLVTKYQIRDYMAVVGTMHT 591
            A++Y YV  + EKR PHR GH+ + +    EG   LGGA  +P DG + +F  ++ ++ ++FVD DPYVS+GLVTK  IR   A VGT  T
Sbjct:  106 ALIYDYVPDILEKRGPHRPGHIAVAREEEAEGKMCLGGAWGDPVDGALFIFLVNSADEVQKFVDRDPYVSNGLVTKIDIRPVAAAVGTWIT 196
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig121.70.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEJ2_ECTSI5.740e-6264.13Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6S9EHW5_HETAK4.640e-2551.92Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A9UWG7_MONBE1.770e-2245.19Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A835ZJU7_9STRA4.330e-2252.38YCII domain-containing protein n=1 Tax=Tribonema m... [more]
A0A059LFT5_9CHLO2.690e-1850.00YCII domain-containing protein n=1 Tax=Helicospori... [more]
A0A7S0EWB9_9EUKA3.200e-1843.40Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A3B9ZKB7_9BACT2.670e-1745.35YCII domain-containing protein n=1 Tax=Prolixibact... [more]
L8HGR4_ACACA2.440e-1643.75YCIIrelated domain containing protein n=1 Tax=Acan... [more]
A0A8K1FKV5_PYTOL6.930e-1645.83Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2K1K357_PHYPA3.870e-1546.15YCII domain-containing protein n=1 Tax=Physcomitri... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig121contigP-littoralis_Contig121:296185..301392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LEJ2
PFAMsYCII
Model size1834
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorychloroplast
Exons5
Evalue6.43e-68
EggNOG OGs2DZF9@1|root,2S6ZJ@2759|Eukaryota
Ec32 ortholog descriptionDimeric alpha-beta barrel
Ec32 orthologEc-21_004450.1
DescriptionYCII-related domain
Cds size585
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig121.70.1prot_P-littoralis_Contig121.70.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig121 296197..300155 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789521.3949285-UTR-P-littoralis_Contig121:296184..2961961680789521.3949285-UTR-P-littoralis_Contig121:296184..296196Pylaiella littoralis U1_48UTRP-littoralis_Contig121 296185..296196 +
1680789521.462126-UTR-P-littoralis_Contig121:300155..3013921680789521.462126-UTR-P-littoralis_Contig121:300155..301392Pylaiella littoralis U1_48UTRP-littoralis_Contig121 300156..301392 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789521.4060605-CDS-P-littoralis_Contig121:296196..2962661680789521.4060605-CDS-P-littoralis_Contig121:296196..296266Pylaiella littoralis U1_48CDSP-littoralis_Contig121 296197..296266 +
1680789521.4149454-CDS-P-littoralis_Contig121:297668..2978901680789521.4149454-CDS-P-littoralis_Contig121:297668..297890Pylaiella littoralis U1_48CDSP-littoralis_Contig121 297669..297890 +
1680789521.4297364-CDS-P-littoralis_Contig121:298361..2984901680789521.4297364-CDS-P-littoralis_Contig121:298361..298490Pylaiella littoralis U1_48CDSP-littoralis_Contig121 298362..298490 +
1680789521.4407918-CDS-P-littoralis_Contig121:299245..2993641680789521.4407918-CDS-P-littoralis_Contig121:299245..299364Pylaiella littoralis U1_48CDSP-littoralis_Contig121 299246..299364 +
1680789521.4499755-CDS-P-littoralis_Contig121:300110..3001551680789521.4499755-CDS-P-littoralis_Contig121:300110..300155Pylaiella littoralis U1_48CDSP-littoralis_Contig121 300111..300155 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig121.70.1

>prot_P-littoralis_Contig121.70.1 ID=prot_P-littoralis_Contig121.70.1|Name=mRNA_P-littoralis_Contig121.70.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=195bp
MNVLCKQLGLATRRASGAVRNLSAWLSLAAVIIVLVAAGESHAFVAPSAS
LPLAGASSAVSNTSGHERGGNTRPSSSSSSSSSSGCLAMSADGGATPAGP
TKMAAVLYTYVDGMEEKRAPHRSGHLDLLKNMSEEGSCLLGGALVEPCDG
GIVLFSTPEKAREFVDNDPYVSSGLVTKYQIRDYMAVVGTMHTK*
back to top

mRNA from alignment at P-littoralis_Contig121:296185..301392+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig121.70.1 ID=mRNA_P-littoralis_Contig121.70.1|Name=mRNA_P-littoralis_Contig121.70.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5208bp|location=Sequence derived from alignment at P-littoralis_Contig121:296185..301392+ (Pylaiella littoralis U1_48)
CAAAGGAGCGCCATGAATGTCCTGTGCAAACAGCTTGGATTGGCAACCCG
GCGGGCAAGCGGGGCCGTGCGGAATCTCAGCGGTGAGAAGATGAGAAGAT
CAATCTTAATACAGTATCTGGCATCCTCCCTCGTCGCCTCTTTCGCATAC
TCGTACGGTATGATGTCACATGATATCATATACTGGTACAAGTAATACAA
CCGATGCGTGCATTCAACACGTACCAGCAGCAGCTTGAGTGCCCTTTTCA
CCGGTCTGTAAACGGTACATGGGCAGTGAGACTACTACTACTACTGCTGT
ACGCCAACTTTCCTCCTCGTATGAGATTGCGGAGGAAATCGTGCGGTTCT
ACTTGTGCAGCAGTCTAGACGATCCGGTGCTTCAGCTGTACCAACAACTT
TTCTCTACGAACCTCTGTACACCAGTACTCCGTGCTCGTAGCCTTCTGAC
CTGAACCATGTACCACAGATATCATATCGTATATATCCGGAGAACATCGT
GACACATCACTGGAACTGCTACCGATGACCACGACGACCCACAGAACACA
GCAGTAGTCGTCGGCTTAGTATTTCTATAGTGGGGCTGGTTCCTTGCTGC
CGTATGAAATCAAATGTGTGCGTGTGTGTCCAATGGCTTGGGTCAGACAC
ACACACTCAGACACACGCATTATTTTGCTACTTTGAAAGCGGCTATGCTG
TTAGTAAAAGCAGATCCGGCTTCGCCGACGAGGGTAGGGACCGCGGATCC
CTGCTCGCGAGAAAAAATCTCACGCATGTACCGCACAAGGAAGGTGGGGG
TAACTCCTCCTGTGTTGACCTTCCTCCTGTGTGACCCCGTCGATGGGCCT
AGCCTGTAGTTTGAACCGCAGGGTGCAGACTAGTGTGCCAGAGAATATGG
GATGACAACACAAACACTCCGTGCTCGTAGCCTTCTGACCTGAACCATGT
ACCACAGATATCATATCGTATACATCCGGAGAACATCGTCACACATCATC
GGAACTGCTACCGATGACCACGACGACCCACAGACCACAGCAGTAGTCGT
CGGCTTAGTATTTCTTTAGTGGGGCTGGTTACTTGCTGCCGTATGAAATC
AAATGTGTGCGTGTGTGTCCAATGGCTTGGGTCAGACACACACACTCAGA
CACACGCATTACGAGGGTAGGGACCGCGGACCCCTGCTCGCGAGAAAAAA
TCTCACGCATGTACCGCAGAAGGAAGGTGGGGGTAACTCCTCCTGTGTGA
CCCCGTCGATGGGCCTAGCCTGTAGTTTGAACCGCAGGGTGCAGACTAGT
GTGCCAGAGAATATGGGATGACAACACACAAACATTATTACACAGTATCG
GGTGGAGTTTTGCTGCATCAGTATGTTCGCCCTCTTCTGTTTGTTTTCGA
TTCGTTTGTTAGCGGCTTGTCAAAACCTTAAGCTGTGTGAAATGTACTGT
AAACGAATTGCACATGGAAACTCGGAATCGGCAGCTTGGCTCTCACTGGC
GGCGGTGATCATCGTGTTGGTCGCCGCCGGCGAGTCCCATGCGTTCGTCG
CCCCGTCCGCCTCGCTGCCGCTGGCGGGCGCCTCCTCCGCCGTGTCGAAC
ACAAGTGGGCACGAACGTGGTGGCAACACCCGGCCCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCGGCTGCCTTGCGATGAGCGCGGACGGGGGCGCGA
CTCCAGGTAAGGAGGGGTCAGCTCTACTGCTGTAGTTTTTCACTGTGAAG
CCTTAGCGTTTCCACAAGAAAATGGACGTGCCAGCAAGCATGTGCCGGCG
AGCCTGCGCTCGCCAGCAAAGAGTAGATATGTTCTTGGAGTTCAACAGTG
TGTTGGATGCTCTGTCTTGGGCGGGGGGATTGAGCCGGTGTCTGAGCTGG
AATAGTAAAAATAAGATACCAAACCATCCTCGTTTCAAGAAGGATACCCT
CAGTGTGTATTTCTGGCTGCGACGAACAATAGTCGGAGCTCGGCTCTTGA
TCTGAGGGAAACTGTTCGTACGACACGTGGGCACAGCAGCATTTTCTATT
TGCAAGGTTTATTTGTTTTTGCGGTCTATCTTACCAACAGCGCGGCGCGC
GCGCGGCACCGTTCGTTGTATTGCTCACTTTTTTATGACGTATGCATGCA
ACAACGAAATAAACTATTCGTATTTAGCGGGACCCACGAAGATGGCCGCG
GTTCTGTACACGTACGTTGACGGCATGGAGGAAAAGCGCGCACCGCACAG
ATCGGGTCACCTCGACCTGCTCAAGAACATGTCGGAAGAGGGGTCATGCC
TACTCGGTGAGAGTTTGCTGTACAAGTAGGAGAACATTTTATGAACCTGC
GCCTTGCGCATCCTGTATGGTGCTGGTGCCGGTGATGATACCGTAGCCAC
TTCCCCTGTAACATGGCCCGCTGTCGTATTTTTCGTCGACGAGGTCACTT
TATATTTTCATTTTGGAATACCTGGCGTAACTGCGGTACCATGTGCACAG
CTGTTGTCTTTGTAAGTCTGTCTTCAACGGTAGATGTAGCAGTCCTGTGT
GTGTGTGTGTTTTTTGTATTTTTCGTCATGGCGAGCTCCAACGTTGTGAA
GGTGTGTCCTGGGGCTTACGAGTCACCCTCACACTTGACTGCTATAATAG
CACTCGATACACACGCAAAGCAAATACAGCCTGTGGTCTGACAGGTGTAC
TTCATCCATCAACAAATACGGCCGTTCCAGATTACCGACCCACACCCAGA
AGAGGAGAGCTCCGCTGACAAGATTGTTGAAGCCGGTATCAAATTACCAC
AGAAAATTTCAAGTAGCCTTCAGCGGCGGGGGCGGCCACACTCATTGCGA
TATCGTATCATATGCATCCAACGATGGGCAGCGTTGAATGACATTGTGGC
CTCAAATCATACATGAAGGCGAGGTAGGCCCAGGCGAAACTCAGGTATGC
TTCTTATGAGAGGACCGTACCACTGCACTGTTTTTTTCGTATTAAAGCAA
TAAGGCTTGGCTTCGCGCGGGTGTCGAACCAACCTCAACACTCTCAAACT
CGTTCGTTCAGGGGGAGCCCTCGTGGAGCCCTGTGACGGGGGGATTGTCT
TGTTTTCCACCCCGGAAAAAGCCCGGGAGTTCGTCGACAATGACCCCTAC
GTTTCGTCCGGACTCGTCACCAAGTACCAGGTCTGCCTGTCTGTGTGTGT
AATGTCGACGTTGTTGTTGTTGTTGTTGGTGTTGTTGTTGGTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTATTGTTGTCATTGTTATCGTTG
TTGTTGCTGGTGGTTCTCATATTAACTCATTTCACGAATCTAGCTCATGG
TAACACACCCGGCACAGAAGCACCCATGTGTGGGTGGGTGGGTGGGTGTT
GATGTTCCTATATTGACATGATAGATTTGTTACCGCTCGTCACTTAGTCC
CCAGATACGGGTAAGTGAAAGGTGCCCGAAACTGATTGGCTGGTTGTGTT
GGCTAGTTGATATTTTTGTCTAAATACATCTCGACGTGTTTGTGGGCACG
TGCAGTAACGTCGAGCCTTTATAAAGTTTTGAGCGTGCAAGGTTTGCCTT
AGGGAATGAATGCTATCTAAAGTTACAGTTCAGGAGGATATTTCTGGGGC
CCACTCCTAGTGAGTATGTTACTGAGATAAGAAGCCGGTCTTGCGTTCAA
ACAGCCTGCTACTGGAATCCCTGGTACGAGTTTTTCTTCGTCGTTATAGC
CGCGCGGACCCAGATTTTGCACATTAGCCAACAGTTCGTAGTGTCTGTGA
TCGTATGGCATTGGTATTCGTACACATTTTCATAAGTTCATACCCAGTTC
CTTTCGAAAACACCTGTTTTTGCCCGGCTAACTCAATAACCCACGCAACG
CACTCGACTATACTCATTCCCACCAGATTCGTGACTACATGGCCGTGGTG
GGCACAATGCACACGAAGTGACGACCTGTGGCGTCATCTGACCTCGAAAG
CCCGAGACCGCTGGCGTAACATTTGTCTCACCCAATCGGGTGGGCTGGTT
GTGGAACGCGTCGAAGAGAAGGGTTGACTACCCGGCTGTTTTGCTGTTTG
TCTGCTGTTTTCCTCCCCAAGACGTTTTTATGAGAGGCAAGAAACACTGC
TCATTGTCGCGGCTGCGAAGCGACGAAGAGGGGGTTGGTGGAGCGCTTGG
TCCAGAGCAGATTTCATGCAGGAGTTTCGGTTACGCCTTTTCAAAGCCGA
AATGTTGGAGGCTTATTTCCCGACTAGGGCTGTCCAAGACATGGTGGATC
AATGTAGCTTATAAAGACACGACACGAATTTTTGCGTCCTTCTGATATTG
TTGCGCAGATGATTTTGTGGTGTACATTATTTTTGCGGCGGATGCGGTCA
AGGGGTTCGGGCAGATACTTTGTTCGATAGTGTTGTTTACACTTATGTGT
CGTGTTGTTTCTTAAGGACGAAAAGTGGTGTGCCACGGTAAGGTAGATTT
AGACCACAACGGGGACGACGTGACTTGTATACTTACACATCATGGTAGTG
CACAAGTCGCCACGATCCCTTCAAAGTGTTTGGTTTTGGTTTTGGTTTTG
TCGAAATCGGATGCCCTTTGGAAATGTCCAAGGCGATTGCCTGTTGATAT
TTCTCCGTTGTGCCAGACAGGCAAATCATACTTCGAAGAATTTTTTATGA
TTTCCTGTTGTTTAGGAGCTTTCATTGGCTTCATGTTCGTAGTACCAGAG
ATGGATATGGACCATCCCTTGGCTCGGAGTGTTGTTACGTCTGGCGTGAA
ATAGCACGTGTAGTTCAATCCAGGGATGACACATGCATATTTTGACGGCA
GAGAATTACTGGGGTTAACTCGTTTCGTCTAAGATCAACGTGTAACGTGA
CATATCTTTGTACCTTGGGAGTTTGCTCGGCTGTGAAGGCCCTCTGGATT
TGACAGAGCACAGCAGCATCTGGAAGAGCACGCAGCCGCGGGAATTGAAC
TTCACCCGCGTGCGTGCGGGGCCGTCATGCCAACCCTCGTGCTATGTTTT
TCGTTGTCTTACTACATGATCCCCTTGCGAACCACCGCCCGTGTCGTGAG
CAGTTTCTTGCCATCTGTTGACTAGAAAATGCTTGCTTGGGACCAGATTT
ACAACTTGAAAAAATGAAAATACTTGGATGGTACGCAATTTTAATTTTAT
AAATTTCG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig121:296185..301392+

>mRNA_P-littoralis_Contig121.70.1 ID=mRNA_P-littoralis_Contig121.70.1|Name=mRNA_P-littoralis_Contig121.70.1|organism=Pylaiella littoralis U1_48|type=CDS|length=585bp|location=Sequence derived from alignment at P-littoralis_Contig121:296185..301392+ (Pylaiella littoralis U1_48)
ATGAATGTCCTGTGCAAACAGCTTGGATTGGCAACCCGGCGGGCAAGCGG
GGCCGTGCGGAATCTCAGCGCTTGGCTCTCACTGGCGGCGGTGATCATCG
TGTTGGTCGCCGCCGGCGAGTCCCATGCGTTCGTCGCCCCGTCCGCCTCG
CTGCCGCTGGCGGGCGCCTCCTCCGCCGTGTCGAACACAAGTGGGCACGA
ACGTGGTGGCAACACCCGGCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCGGCTGCCTTGCGATGAGCGCGGACGGGGGCGCGACTCCAGCGGGACCC
ACGAAGATGGCCGCGGTTCTGTACACGTACGTTGACGGCATGGAGGAAAA
GCGCGCACCGCACAGATCGGGTCACCTCGACCTGCTCAAGAACATGTCGG
AAGAGGGGTCATGCCTACTCGGGGGAGCCCTCGTGGAGCCCTGTGACGGG
GGGATTGTCTTGTTTTCCACCCCGGAAAAAGCCCGGGAGTTCGTCGACAA
TGACCCCTACGTTTCGTCCGGACTCGTCACCAAGTACCAGATTCGTGACT
ACATGGCCGTGGTGGGCACAATGCACACGAAGTGA
back to top