mRNA_P-littoralis_Contig1207.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1207.3.1
Unique NamemRNA_P-littoralis_Contig1207.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1207.3.1 vs. uniprot
Match: A0A6H5KW71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW71_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.930e-8
Identity = 26/37 (70.27%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:  181 CSHAGCTKQPSYGVAGTETAEFCSGHANDGMVDVVTK 291
            C HAGC KQP YGVAGT+  EFCSGH   GMVDVV +
Sbjct:    4 CGHAGCPKQPKYGVAGTKKREFCSGHRKAGMVDVVNR 40
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BLAST of mRNA_P-littoralis_Contig1207.3.1 vs. uniprot
Match: D8LCH9_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCH9_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 4.510e-5
Identity = 20/36 (55.56%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:  175 RECSHAGCTKQPSYGVAGTETAEFCSGHANDGMVDV 282
            + C H GCT + ++GV G++ AEFCS HA DGMVD+
Sbjct:    7 KTCDHVGCTTRANFGVPGSKKAEFCSRHAEDGMVDL 42
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1207.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KW71_9PHAE2.930e-870.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCH9_ECTSI4.510e-555.56EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1207contigP-littoralis_Contig1207:5168..5586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FLV4
Model size419
Max annot lvl2880.D7FLV4|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.97e-05
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Cds size417
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789517.4068222-CDS-P-littoralis_Contig1207:5167..55841680789517.4068222-CDS-P-littoralis_Contig1207:5167..5584Pylaiella littoralis U1_48CDSP-littoralis_Contig1207 5168..5584 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1207.3.1prot_P-littoralis_Contig1207.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1207 5168..5584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1207.3.1

>prot_P-littoralis_Contig1207.3.1 ID=prot_P-littoralis_Contig1207.3.1|Name=mRNA_P-littoralis_Contig1207.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=139bp
RQQQDDTCPRFLTRSYTFGGYRQRGLLPKSTKKVPAHPHRCSSRDRASIF
SFPPGRMGRECSHAGCTKQPSYGVAGTETAEFCSGHANDGMVDVVTKKCT
RLGCTKQPRYGMAGTKMAEFCSGQSKGGMVDVVTKKCTH
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mRNA from alignment at P-littoralis_Contig1207:5168..5586+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1207.3.1 ID=mRNA_P-littoralis_Contig1207.3.1|Name=mRNA_P-littoralis_Contig1207.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=419bp|location=Sequence derived from alignment at P-littoralis_Contig1207:5168..5586+ (Pylaiella littoralis U1_48)
AGACAGCAGCAAGATGACACATGCCCCCGTTTTTTGACGAGATCGTACAC
CTTCGGCGGATATCGACAGAGAGGGCTGCTCCCGAAGAGCACAAAAAAAG
TGCCTGCCCACCCCCATCGTTGCTCTTCGAGAGATCGAGCATCTATTTTC
TCTTTCCCGCCAGGCAGGATGGGGAGAGAATGTAGTCATGCTGGTTGCAC
AAAGCAGCCGAGCTATGGCGTGGCAGGCACCGAGACGGCGGAGTTCTGCT
CTGGACACGCCAACGACGGGATGGTGGACGTCGTCACCAAAAAGTGCACC
CGTCTTGGCTGCACCAAACAGCCGAGGTATGGCATGGCAGGTACCAAGAT
GGCGGAGTTCTGCTCGGGACAATCCAAAGGCGGGATGGTGGACGTCGTCA
CCAAGAAGTGCACCCACCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1207:5168..5586+

>mRNA_P-littoralis_Contig1207.3.1 ID=mRNA_P-littoralis_Contig1207.3.1|Name=mRNA_P-littoralis_Contig1207.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=417bp|location=Sequence derived from alignment at P-littoralis_Contig1207:5168..5586+ (Pylaiella littoralis U1_48)
AGACAGCAGCAAGATGACACATGCCCCCGTTTTTTGACGAGATCGTACAC
CTTCGGCGGATATCGACAGAGAGGGCTGCTCCCGAAGAGCACAAAAAAAG
TGCCTGCCCACCCCCATCGTTGCTCTTCGAGAGATCGAGCATCTATTTTC
TCTTTCCCGCCAGGCAGGATGGGGAGAGAATGTAGTCATGCTGGTTGCAC
AAAGCAGCCGAGCTATGGCGTGGCAGGCACCGAGACGGCGGAGTTCTGCT
CTGGACACGCCAACGACGGGATGGTGGACGTCGTCACCAAAAAGTGCACC
CGTCTTGGCTGCACCAAACAGCCGAGGTATGGCATGGCAGGTACCAAGAT
GGCGGAGTTCTGCTCGGGACAATCCAAAGGCGGGATGGTGGACGTCGTCA
CCAAGAAGTGCACCCAC
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