mRNA_P-littoralis_Contig1031.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1031.11.1
Unique NamemRNA_P-littoralis_Contig1031.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1031.11.1 vs. uniprot
Match: A0A6H5JGV3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGV3_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 8.920e-17
Identity = 42/61 (68.85%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    1 SVAVQIANPSTDGVSLPAGLCLGQLFTVSVVAPDQLHVNAVANTPKSAAEISRARSELERP 183
            SV VQIANPS DGV L  GLCLGQL TV++  PDQLHVN+VANTP +  EI  A+SELE P
Sbjct:   59 SVVVQIANPSADGVRLYDGLCLGQLSTVTITEPDQLHVNSVANTPVTDDEIRHAKSELEEP 119
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BLAST of mRNA_P-littoralis_Contig1031.11.1 vs. uniprot
Match: A0A6H5JXY7_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY7_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 8.980e-17
Identity = 42/61 (68.85%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    1 SVAVQIANPSTDGVSLPAGLCLGQLFTVSVVAPDQLHVNAVANTPKSAAEISRARSELERP 183
            SV VQIANPS DGV L  GLCLGQL TV++  PDQLHVN+VANTP +  EI  A+SELE P
Sbjct:   60 SVVVQIANPSADGVRLYDGLCLGQLSTVTITEPDQLHVNSVANTPVTDDEIRHAKSELEEP 120
[Close]
BLAST of mRNA_P-littoralis_Contig1031.11.1 vs. uniprot
Match: A0A6H5K112_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K112_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 9.010e-17
Identity = 42/61 (68.85%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    1 SVAVQIANPSTDGVSLPAGLCLGQLFTVSVVAPDQLHVNAVANTPKSAAEISRARSELERP 183
            SV VQIANPS DGV L  GLCLGQL TV++  PDQLHVN+VANTP +  EI  A+SELE P
Sbjct:   59 SVVVQIANPSADGVRLYDGLCLGQLSTVTITEPDQLHVNSVANTPVTDDEIRHAKSELEEP 119
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1031.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JGV3_9PHAE8.920e-1768.85Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JXY7_9PHAE8.980e-1768.85RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K112_9PHAE9.010e-1768.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1031contigP-littoralis_Contig1031:65777..65959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size184
Hectar predicted targeting categoryother localisation
Exons1
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789370.2772758-CDS-P-littoralis_Contig1031:65776..659591680789370.2772758-CDS-P-littoralis_Contig1031:65776..65959Pylaiella littoralis U1_48CDSP-littoralis_Contig1031 65777..65959 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1031.11.1prot_P-littoralis_Contig1031.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1031 65777..65959 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1031.11.1

>prot_P-littoralis_Contig1031.11.1 ID=prot_P-littoralis_Contig1031.11.1|Name=mRNA_P-littoralis_Contig1031.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=61bp
SVAVQIANPSTDGVSLPAGLCLGQLFTVSVVAPDQLHVNAVANTPKSAAE
ISRARSELERP
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mRNA from alignment at P-littoralis_Contig1031:65777..65959+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1031.11.1 ID=mRNA_P-littoralis_Contig1031.11.1|Name=mRNA_P-littoralis_Contig1031.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=183bp|location=Sequence derived from alignment at P-littoralis_Contig1031:65777..65959+ (Pylaiella littoralis U1_48)
TCAGTGGCGGTTCAAATTGCAAACCCGTCCACAGATGGAGTCTCCTTGCC
TGCGGGTTTATGTCTTGGTCAGTTGTTTACAGTGTCAGTTGTTGCTCCTG
ATCAACTCCATGTCAACGCTGTTGCTAATACCCCAAAATCTGCAGCAGAA
ATTAGTCGTGCACGATCTGAACTTGAGCGTCCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1031:65777..65959+

>mRNA_P-littoralis_Contig1031.11.1 ID=mRNA_P-littoralis_Contig1031.11.1|Name=mRNA_P-littoralis_Contig1031.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=183bp|location=Sequence derived from alignment at P-littoralis_Contig1031:65777..65959+ (Pylaiella littoralis U1_48)
TCAGTGGCGGTTCAAATTGCAAACCCGTCCACAGATGGAGTCTCCTTGCC
TGCGGGTTTATGTCTTGGTCAGTTGTTTACAGTGTCAGTTGTTGCTCCTG
ATCAACTCCATGTCAACGCTGTTGCTAATACCCCAAAATCTGCAGCAGAA
ATTAGTCGTGCACGATCTGAACTTGAGCGTCCT
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