mRNA_P-littoralis_Contig103.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig103.13.1
Unique NamemRNA_P-littoralis_Contig103.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig103.13.1 vs. uniprot
Match: A0A6H5L589_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L589_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 3.240e-66
Identity = 114/153 (74.51%), Postives = 128/153 (83.66%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPIVSNSSAESEYIATGEGVREALFVRHVLSFTAPETSGSTIKVLEDNEGAMALIQNPLGSGRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLPE 460
            YVDASYAD   DRRSVSG+AT VGG V+SH S TQ IVS SS E+EYIA GEGV+EALFVR VLSF APETSGS+I+VLEDN+GAMAL+QNPL S RSKHIDVR+HFIR LFRSG IS++ V T EQHADVLTKA S+   +YHR+ LMNLPE
Sbjct:  230 YVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGEISIKFVSTSEQHADVLTKAHSKSSLQYHRRKLMNLPE 381
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BLAST of mRNA_P-littoralis_Contig103.13.1 vs. uniprot
Match: A0A6H5KGI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGI0_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 4.180e-65
Identity = 113/153 (73.86%), Postives = 129/153 (84.31%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPIVSNSSAESEYIATGEGVREALFVRHVLSFTAPETSGSTIKVLEDNEGAMALIQNPLGSGRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLPE 460
            YVDASYAD   D+RSV+G+AT VGG VVSH S TQ I+S SS E+EYIA GEGV+EALFVR VLSF APETSGS+IKVLEDN+GA+AL+QNPL SGR+KHIDVR+HFI  LFRSG ISV+ V T EQHAD+LTKALSR   +YHR+ LMNLPE
Sbjct:  235 YVDASYADTE-DKRSVTGMATTVGGTVVSHGSKTQSILSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIHGLFRSGDISVKFVPTTEQHADLLTKALSRANLQYHRRKLMNLPE 386
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BLAST of mRNA_P-littoralis_Contig103.13.1 vs. uniprot
Match: A0A6H5KR64_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR64_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 4.580e-65
Identity = 102/152 (67.11%), Postives = 122/152 (80.26%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPIVSNSSAESEYIATGEGVREALFVRHVLSFTAPETSGSTIKVLEDNEGAMALIQNPLGSGRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLP 457
            +VD+SYAD   DRRS +G+A  VGG VV   + TQP+ + S+ E+EYIA GEGV+EALFVR VLSF APETSG+TI+V EDNEGA+AL+QNP  S RSKHIDVRFHFIRELF++G I+ ++V TEEQHAD+LTK L R    YHRKALMNLP
Sbjct:   60 FVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALFVRGVLSFIAPETSGATIRVREDNEGALALVQNPFSSARSKHIDVRFHFIRELFKAGKITADYVSTEEQHADMLTKVLGRGKLEYHRKALMNLP 211
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BLAST of mRNA_P-littoralis_Contig103.13.1 vs. uniprot
Match: A0A6H5KGX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGX6_9PHAE)

HSP 1 Score: 216 bits (551), Expect = 1.690e-64
Identity = 114/153 (74.51%), Postives = 129/153 (84.31%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPIVSNSSAESEYIATGEGVREALFVRHVLSFTAPETSGSTIKVLEDNEGAMALIQNPLGSGRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLPE 460
            YVDASYAD   DRRSVSG+AT VGG V+SH S TQ IVS SS E+EYIA GEGV+EALFVR VLSF APETSGS+I+VLEDN+GAMAL+QNPL S RSKHIDVR+HFIR LFRSG IS++ V T EQHAD+LTKALS+   +YHR+ LMNLPE
Sbjct:  445 YVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNLPE 596
[Close]
BLAST of mRNA_P-littoralis_Contig103.13.1 vs. uniprot
Match: A0A6H5K9K6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K6_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 3.150e-64
Identity = 109/152 (71.71%), Postives = 125/152 (82.24%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPIVSNSSAESEYIATGEGVREALFVRHVLSFTAPETSGSTIKVLEDNEGAMALIQNPLGSGRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLP 457
            YVDASYAD    RRSV+GIA  VGG VVSH S TQ IVS S++E+EYIA GEGV+EALFVR VLSF APETSG+ IKVLEDN+GA++L+QNP  S RSKHIDVRFHFIRELF+SG ISVE++ T+EQHAD+LTKAL R     HR ALMN+P
Sbjct:  219 YVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKALGRTKLEDHRNALMNIP 370
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BLAST of mRNA_P-littoralis_Contig103.13.1 vs. uniprot
Match: A0A6H5KQ05_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ05_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 5.250e-64
Identity = 113/153 (73.86%), Postives = 130/153 (84.97%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPIVSNSSAESEYIATGEGVREALFVRHVLSFTAPETSGSTIKVLEDNEGAMALIQNPLGSGRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLPE 460
            YVDASYAD   DRRSVSG+AT VGG V+SH S+TQ IVS SS E+EYIA GEGV+EALFVR VLSF  PETSGS+I+VL+DN+GA+AL+QNPL SGR+KHIDVR+HFIR LFRSG ISV+ V T EQHAD+LTKALSR   +YHR+ LMNLPE
Sbjct:  352 YVDASYADTE-DRRSVSGLATTVGGTVISHGSNTQSIVSVSSTEAEYIAAGEGVKEALFVRAVLSFVPPETSGSSIEVLDDNQGAIALVQNPLRSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 503
[Close]
BLAST of mRNA_P-littoralis_Contig103.13.1 vs. uniprot
Match: A0A6H5JQH8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH8_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 1.310e-63
Identity = 110/153 (71.90%), Postives = 125/153 (81.70%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPIVSNSSAESEYIATGEGVREALFVRHVLSFTAPETSGSTIKVLEDNEGAMALIQNPLGSGRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLPE 460
            YVDASYAD   DRRS+SG+AT VGG VVSH S TQ IVS SS E+EYIA GEGV+EALFVR VLSF APE SGS+I+VLE N+GA+AL+QNPL SGR+KHIDVRFHFIR LFR G I+V+ V T EQHAD+LTK LSR   +YHR+ LM LPE
Sbjct:  101 YVDASYADTK-DRRSMSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRDVLSFVAPEPSGSSIQVLEGNQGAIALVQNPLSSGRTKHIDVRFHFIRGLFRPGDIAVKFVPTTEQHADLLTKGLSRASLQYHRRKLMILPE 252
[Close]
BLAST of mRNA_P-littoralis_Contig103.13.1 vs. uniprot
Match: A0A6H5KPN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN5_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 2.220e-63
Identity = 110/153 (71.90%), Postives = 125/153 (81.70%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPIVSNSSAESEYIATGEGVREALFVRHVLSFTAPETSGSTIKVLEDNEGAMALIQNPLGSGRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLPE 460
            YVDASYAD   DRRSVSG+AT VGG VVSH S TQ IVS S+ E+EYIA  +GV+EALFVR V SF  PETSGS+I+VLEDN+GA+AL+QNPL SGR+KHIDVRFHFIR LFRSG ISV+ V T EQHAD+LTKALSR   +YHR+   NLPE
Sbjct:  107 YVDASYADTE-DRRSVSGLATTVGGTVVSHGSKTQSIVSLSATEAEYIAAEDGVKEALFVRAVQSFVVPETSGSSIQVLEDNQGAIALVQNPLSSGRTKHIDVRFHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRASLQYHRRKPTNLPE 258
[Close]
BLAST of mRNA_P-littoralis_Contig103.13.1 vs. uniprot
Match: A0A6H5JU90_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU90_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 3.610e-63
Identity = 116/153 (75.82%), Postives = 130/153 (84.97%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPIVSNSSAESEYIATGEGVREALFVRHVLSFTAPETSGSTIKVLEDNEGAMALIQNPLGSGRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLPE 460
            YVDASYAD   DRRSVSG+AT VGG VVSH S TQ +VS SS E+EYIA GEGV+EALFVR VLSF APETSGS+IKVLEDN+GA+AL+QNPL SGR+KHIDVR+HFIR LFRSG ISV+ V T EQHAD+LTKALSR   +YHR+ LMNLPE
Sbjct:  704 YVDASYADTE-DRRSVSGLATTVGGTVVSHGSKTQSMVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 855
[Close]
BLAST of mRNA_P-littoralis_Contig103.13.1 vs. uniprot
Match: A0A6H5KGN1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGN1_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 4.960e-63
Identity = 116/153 (75.82%), Postives = 130/153 (84.97%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPIVSNSSAESEYIATGEGVREALFVRHVLSFTAPETSGSTIKVLEDNEGAMALIQNPLGSGRSKHIDVRFHFIRELFRSGVISVEHVRTEEQHADVLTKALSRDLFRYHRKALMNLPE 460
            YVDASYAD   DRRSVSG+AT VGG VVSH S TQ IVS SS E+EYIA GEGV+EALFVR VLSF APETSGS+I+VLEDN+GA+AL+QNPL SGR+KHIDVR+HFIR LFRSG ISV+ V T EQHAD+LTKALSR   +YHR+ LMNLPE
Sbjct:  703 YVDASYADTE-DRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIQVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 854
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig103.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L589_9PHAE3.240e-6674.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGI0_9PHAE4.180e-6573.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR64_9PHAE4.580e-6567.11Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGX6_9PHAE1.690e-6474.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9K6_9PHAE3.150e-6471.71Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KQ05_9PHAE5.250e-6473.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQH8_9PHAE1.310e-6371.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPN5_9PHAE2.220e-6371.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU90_9PHAE3.610e-6375.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGN1_9PHAE4.960e-6375.82Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig103contigP-littoralis_Contig103:60638..61136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog67593.Physo133508
PFAMsRVT_2,Retrotran_gag_2,rve
Model size499
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.41e-22
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHHC@4776|Peronosporales
Descriptiongag-polypeptide of LTR copia-type
Cds size399
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789367.187393-UTR-P-littoralis_Contig103:60637..607011680789367.187393-UTR-P-littoralis_Contig103:60637..60701Pylaiella littoralis U1_48UTRP-littoralis_Contig103 60638..60701 +
1680789367.2140574-UTR-P-littoralis_Contig103:61100..611361680789367.2140574-UTR-P-littoralis_Contig103:61100..61136Pylaiella littoralis U1_48UTRP-littoralis_Contig103 61101..61136 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789367.2002747-CDS-P-littoralis_Contig103:60701..611001680789367.2002747-CDS-P-littoralis_Contig103:60701..61100Pylaiella littoralis U1_48CDSP-littoralis_Contig103 60702..61100 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig103.13.1prot_P-littoralis_Contig103.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig103 60702..61100 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig103.13.1

>prot_P-littoralis_Contig103.13.1 ID=prot_P-littoralis_Contig103.13.1|Name=mRNA_P-littoralis_Contig103.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=133bp
MVGGAVVSHKSSTQPIVSNSSAESEYIATGEGVREALFVRHVLSFTAPET
SGSTIKVLEDNEGAMALIQNPLGSGRSKHIDVRFHFIRELFRSGVISVEH
VRTEEQHADVLTKALSRDLFRYHRKALMNLPE*
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mRNA from alignment at P-littoralis_Contig103:60638..61136+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig103.13.1 ID=mRNA_P-littoralis_Contig103.13.1|Name=mRNA_P-littoralis_Contig103.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=499bp|location=Sequence derived from alignment at P-littoralis_Contig103:60638..61136+ (Pylaiella littoralis U1_48)
GTACGTCGACGCGAGCTACGCCGACGACCCGGCTGATAGACGTTCGGTCT
CCGGGATAGCAACCATGGTCGGTGGGGCTGTTGTCAGCCACAAAAGTTCA
ACGCAGCCGATAGTTTCGAACTCCTCAGCAGAGTCGGAGTACATTGCGAC
TGGGGAGGGCGTGAGAGAGGCGTTGTTTGTGCGGCATGTGCTTTCGTTTA
CTGCGCCGGAGACGAGTGGTAGCACAATCAAGGTCCTTGAGGACAACGAG
GGGGCTATGGCGCTGATTCAAAACCCTCTCGGCTCTGGCCGTAGCAAACA
CATAGACGTGCGCTTCCATTTTATTCGGGAATTGTTTAGATCGGGGGTCA
TCTCGGTCGAGCACGTCAGGACGGAGGAACAGCACGCCGACGTTCTCACC
AAGGCGCTGAGCCGCGACTTGTTCCGGTACCACCGGAAAGCATTGATGAA
TTTGCCGGAGTAGGCGACTGTTTTCCCGTCTTTGTTTTGAGCACAGGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig103:60638..61136+

>mRNA_P-littoralis_Contig103.13.1 ID=mRNA_P-littoralis_Contig103.13.1|Name=mRNA_P-littoralis_Contig103.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=399bp|location=Sequence derived from alignment at P-littoralis_Contig103:60638..61136+ (Pylaiella littoralis U1_48)
ATGGTCGGTGGGGCTGTTGTCAGCCACAAAAGTTCAACGCAGCCGATAGT
TTCGAACTCCTCAGCAGAGTCGGAGTACATTGCGACTGGGGAGGGCGTGA
GAGAGGCGTTGTTTGTGCGGCATGTGCTTTCGTTTACTGCGCCGGAGACG
AGTGGTAGCACAATCAAGGTCCTTGAGGACAACGAGGGGGCTATGGCGCT
GATTCAAAACCCTCTCGGCTCTGGCCGTAGCAAACACATAGACGTGCGCT
TCCATTTTATTCGGGAATTGTTTAGATCGGGGGTCATCTCGGTCGAGCAC
GTCAGGACGGAGGAACAGCACGCCGACGTTCTCACCAAGGCGCTGAGCCG
CGACTTGTTCCGGTACCACCGGAAAGCATTGATGAATTTGCCGGAGTAG
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