mRNA_P-littoralis_Contig1028.8.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1028.8.1 vs. uniprot
Match: A0A6H5KC66_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC66_9PHAE) HSP 1 Score: 483 bits (1244), Expect = 1.720e-167 Identity = 246/254 (96.85%), Postives = 248/254 (97.64%), Query Frame = 1
Query: 1 HRKLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHYGRVCFYMQNTECVSRENLARLTQLFEKHMDVTRISPYSIIEGELQEE*RKKRKRASSTGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKHYSDVRVRTKDKWITVSKDEAYDNILFMLVEKTHEAVEMYRDGVSEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKSRNKGLDTIAVSVNARLSQLGR 762
HRKLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFH GRVCFYMQNTECVSRENLARLTQLFEKHMDVT ISPYSIIEGELQEE RKKRKRASSTGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRK+YSDVRVRTKDKWITVSKDEAYD ILFMLVEKTHEAVEMY+DGVSEFDMNHFNMFLPVVLEGRDS VPERKKLYEK RNKGLDTIAVSVNARLSQLGR
Sbjct: 5 HRKLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHDGRVCFYMQNTECVSRENLARLTQLFEKHMDVTGISPYSIIEGELQEEWRKKRKRASSTGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVRTKDKWITVSKDEAYDEILFMLVEKTHEAVEMYKDGVSEFDMNHFNMFLPVVLEGRDSSVPERKKLYEKRRNKGLDTIAVSVNARLSQLGR 258
BLAST of mRNA_P-littoralis_Contig1028.8.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE) HSP 1 Score: 484 bits (1246), Expect = 3.410e-154 Identity = 247/252 (98.02%), Postives = 248/252 (98.41%), Query Frame = 1
Query: 7 KLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHYGRVCFYMQNTECVSRENLARLTQLFEKHMDVTRISPYSIIEGELQEE*RKKRKRASSTGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKHYSDVRVRTKDKWITVSKDEAYDNILFMLVEKTHEAVEMYRDGVSEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKSRNKGLDTIAVSVNARLSQLGR 762
KLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFH GRVCFYMQNTECVSRENLARLTQLFEKHMDVT ISPYSIIEGELQEE RKKRKRASSTGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRK+YSDVRVRTKDKWITVSKDEAYD ILFMLVEKTHEAVEMYRDGVSEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKSRNKGLDTIAVSVNARLSQLGR
Sbjct: 2135 KLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHDGRVCFYMQNTECVSRENLARLTQLFEKHMDVTGISPYSIIEGELQEEWRKKRKRASSTGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVRTKDKWITVSKDEAYDEILFMLVEKTHEAVEMYRDGVSEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKSRNKGLDTIAVSVNARLSQLGR 2386
BLAST of mRNA_P-littoralis_Contig1028.8.1 vs. uniprot
Match: Q8QN59_ESV1K (EsV-1-231 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN59_ESV1K) HSP 1 Score: 215 bits (547), Expect = 1.310e-64 Identity = 125/255 (49.02%), Postives = 158/255 (61.96%), Query Frame = 1
Query: 1 HRKLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHYGRVCFYMQNTECVSRENLARLTQLFEKHMDVTRISPYSIIEGELQEE*RKKRKRASS-TGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKHYSDVRVRTKDK-WITVSKDEAYDNILFMLVEKTHEAVEMYRDGVSEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKSRNKGLDTIAVSVNARLSQLG 759
+RKL +RA SC DL +LE V P L+ L I + G V Y+Q E +S LT+ E HM + IS Y GELQEE R K R + ADT + VNPLG+ESLQHIT YV DLL+ + VF+KFGLKLYSL QN+NFR RK + RV K WITV +DEAYD IL +LVEKT EAV M+R + + +HF+M+ +L +DS VPE++KLYE+ RNK L+ IAVSV L ++G
Sbjct: 103 NRKLAIRANLSCFDLSTILESVRTQCPKLIYLGIWYRDGFVYVYVQGAERMSD---TMLTKALEGHMVIVHISTYDAPVGELQEEWRAKPVRGNKKVEVKADTTAVFVNPLGKESLQHITSNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMYSDSILAHKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMG 354
BLAST of mRNA_P-littoralis_Contig1028.8.1 vs. uniprot
Match: D8LP42_ECTSI (EsV-1-231 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP42_ECTSI) HSP 1 Score: 208 bits (530), Expect = 2.870e-63 Identity = 123/255 (48.24%), Postives = 158/255 (61.96%), Query Frame = 1
Query: 1 HRKLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHYGRVCFYMQNTECVSRENLARLTQLFEKHMDVTRISPYSIIEGELQEE*RKKRKRASST-GATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKHYSDVRVRTKDK-WITVSKDEAYDNILFMLVEKTHEAVEMYRDGVSEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKSRNKGLDTIAVSVNARLSQLG 759
+RKLV+RA SC DL +LE V P L+ L I + G V Y+Q E +S LT+ E HM + IS Y GELQEE R K R + +DT + VNPLG+ESL+HI+ YV DLL+ + VF+KFGLKLYSL QN+NFR RK + RV K WITV +DEAYD IL +LVEKT EAV M+R + + +HF+M +L +DS VPE++KLYE+ RNK L+ IAVSV L ++G
Sbjct: 5 NRKLVIRANLSCFDLSTILESVRTQCPKLIYLGIWYRDGFVYVYVQGAERMSD---IMLTKALEGHMVIEHISTYDAPGGELQEEWRAKPVRGNKKIEIKSDTTAVFVNPLGKESLRHISGNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMHSDSILAYKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMG 256
BLAST of mRNA_P-littoralis_Contig1028.8.1 vs. uniprot
Match: A0A6H5K0V6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V6_9PHAE) HSP 1 Score: 150 bits (378), Expect = 1.010e-40 Identity = 105/254 (41.34%), Postives = 139/254 (54.72%), Query Frame = 1
Query: 1 HRKLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHYGRVCFYMQNTECVSRENLARLTQLFEKHMDVTRISPYSIIEGELQEE*RKKRKRASST-GATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKHYSDVRVRTKDK-WITVSKDEAYDNILFMLVEKTHEAVEMYRDGVSEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKSRNKGLDTIAVSVNARLSQL 756
+RKL VRA SC DL +LE V P L+ L I + G V Y Q E +S LA+ E H+ T IS + E QEE R K + A+T + V+PLG+ESLQH T +++ DLL+ + VF KFGLKLYSL QN+NFR RK + RV K WITV ++EAYD IL +LV+KT EAV ++L +DS PE++KLYE+ R L+ IAVSV + ++
Sbjct: 5 NRKLAVRANLSCFDLITILESVRTQCPKLIYLGIWYRDGFVYVYAQGAERMSDIMLAKA---LEGHIVFTDISTFDAPISEPQEEWRAKPVCGNKKIEVKANTTAVFVHPLGKESLQHATSDFIADLLRPLPGIDVFNKFGLKLYSLHQNINFRVRKGDKNARVCCSRKGWITVPREEAYDEILQILVKKTREAVS-------------------IILAYKDSAFPEQRKLYERRRI--LNNIAVSVTDNMRRM 234
BLAST of mRNA_P-littoralis_Contig1028.8.1 vs. uniprot
Match: A0A6H5K135_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K135_9PHAE) HSP 1 Score: 118 bits (295), Expect = 3.720e-29 Identity = 91/253 (35.97%), Postives = 119/253 (47.04%), Query Frame = 1
Query: 1 HRKLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHYGRVCFYMQNTECVSRENLARLTQLFEKHMDVTRISPYSIIEGELQEE*RKKRKRASSTGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKHYSDVRVRTKDKWITVSKDEAYDNILFMLVEKTHEAVEMYRDGV-SEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKSRNKGLDTIAVSVNARLSQL 756
HRKL V+A+PSC DL +LEPV P L+ L I FH G V Y+Q+ E +S +LT + HM +T I+PYSI +C N G+ L E++ DLL V VF+KFG+KLY L QNVNFR RK D RV GV ++HF +L+ +DS VPE++KLYE+ RNK L+ IAV+V LS+L
Sbjct: 10 HRKLRVQADPSCFDLSTVLEPVRTEYPNLIYLGIWFHDGSVYVYVQSAERMSD---IKLTSALKDHMVITNIAPYSI--------------------PLLGSC----NRSGDPRL-----EFIADLLNTLHGVDVFYKFGIKLYVLEQNVNFRARK--GDKRV----------------------------------SGVLPSCHIDHFEKPAESILDSKDSLVPEQRKLYERMRNKVLNNIAVNVTDNLSRL 194
BLAST of mRNA_P-littoralis_Contig1028.8.1 vs. uniprot
Match: A0A6H5JWA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA4_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 1.090e-16 Identity = 53/169 (31.36%), Postives = 88/169 (52.07%), Query Frame = 1
Query: 262 KKRKRASSTGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRT--RKHYSDVRVRTKDKWITVSKDEAYDNILFMLVEKTHEAVEMYRDGVSEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKSRNKGLDTIAVSVNARLSQLGR 762
K RKRA T T ++VNP+G+ESL HIT E + +LL V F+FG KLY+L +N+NF+T + + R+ W+T K + +L L + EAV+ Y D + D+ +F + + + + D + E +Y K G + +A ++ +L ++ R
Sbjct: 117 KNRKRAEKTAVTL----VIVNPIGKESLDHITPELIQELLAGHHGPDVIFRFGAKLYALEENMNFKTDVKSGFISGRLEEDSAWVTQRKTVGFSMLLENLKDNFEEAVQTYVDKIPYDDVENFELDMSYIRKIFD--LQEDMPVYRKFIRDGFNVLASNMAEKLRRIER 279 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1028.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1028.8.1 >prot_P-littoralis_Contig1028.8.1 ID=prot_P-littoralis_Contig1028.8.1|Name=mRNA_P-littoralis_Contig1028.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=72bp MLVEKTHEAVEMYRDGVSEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKSback to top mRNA from alignment at P-littoralis_Contig1028:41442..42206- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1028.8.1 ID=mRNA_P-littoralis_Contig1028.8.1|Name=mRNA_P-littoralis_Contig1028.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=765bp|location=Sequence derived from alignment at P-littoralis_Contig1028:41442..42206- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1028:41442..42206- >mRNA_P-littoralis_Contig1028.8.1 ID=mRNA_P-littoralis_Contig1028.8.1|Name=mRNA_P-littoralis_Contig1028.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=216bp|location=Sequence derived from alignment at P-littoralis_Contig1028:41442..42206- (Pylaiella littoralis U1_48)back to top |