mRNA_P-littoralis_Contig1028.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1028.8.1
Unique NamemRNA_P-littoralis_Contig1028.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1028.8.1 vs. uniprot
Match: A0A6H5KC66_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC66_9PHAE)

HSP 1 Score: 483 bits (1244), Expect = 1.720e-167
Identity = 246/254 (96.85%), Postives = 248/254 (97.64%), Query Frame = 1
Query:    1 HRKLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHYGRVCFYMQNTECVSRENLARLTQLFEKHMDVTRISPYSIIEGELQEE*RKKRKRASSTGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKHYSDVRVRTKDKWITVSKDEAYDNILFMLVEKTHEAVEMYRDGVSEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKSRNKGLDTIAVSVNARLSQLGR 762
            HRKLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFH GRVCFYMQNTECVSRENLARLTQLFEKHMDVT ISPYSIIEGELQEE RKKRKRASSTGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRK+YSDVRVRTKDKWITVSKDEAYD ILFMLVEKTHEAVEMY+DGVSEFDMNHFNMFLPVVLEGRDS VPERKKLYEK RNKGLDTIAVSVNARLSQLGR
Sbjct:    5 HRKLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHDGRVCFYMQNTECVSRENLARLTQLFEKHMDVTGISPYSIIEGELQEEWRKKRKRASSTGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVRTKDKWITVSKDEAYDEILFMLVEKTHEAVEMYKDGVSEFDMNHFNMFLPVVLEGRDSSVPERKKLYEKRRNKGLDTIAVSVNARLSQLGR 258          
BLAST of mRNA_P-littoralis_Contig1028.8.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 484 bits (1246), Expect = 3.410e-154
Identity = 247/252 (98.02%), Postives = 248/252 (98.41%), Query Frame = 1
Query:    7 KLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHYGRVCFYMQNTECVSRENLARLTQLFEKHMDVTRISPYSIIEGELQEE*RKKRKRASSTGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKHYSDVRVRTKDKWITVSKDEAYDNILFMLVEKTHEAVEMYRDGVSEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKSRNKGLDTIAVSVNARLSQLGR 762
            KLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFH GRVCFYMQNTECVSRENLARLTQLFEKHMDVT ISPYSIIEGELQEE RKKRKRASSTGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRK+YSDVRVRTKDKWITVSKDEAYD ILFMLVEKTHEAVEMYRDGVSEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKSRNKGLDTIAVSVNARLSQLGR
Sbjct: 2135 KLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHDGRVCFYMQNTECVSRENLARLTQLFEKHMDVTGISPYSIIEGELQEEWRKKRKRASSTGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVRTKDKWITVSKDEAYDEILFMLVEKTHEAVEMYRDGVSEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKSRNKGLDTIAVSVNARLSQLGR 2386          
BLAST of mRNA_P-littoralis_Contig1028.8.1 vs. uniprot
Match: Q8QN59_ESV1K (EsV-1-231 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN59_ESV1K)

HSP 1 Score: 215 bits (547), Expect = 1.310e-64
Identity = 125/255 (49.02%), Postives = 158/255 (61.96%), Query Frame = 1
Query:    1 HRKLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHYGRVCFYMQNTECVSRENLARLTQLFEKHMDVTRISPYSIIEGELQEE*RKKRKRASS-TGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKHYSDVRVRTKDK-WITVSKDEAYDNILFMLVEKTHEAVEMYRDGVSEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKSRNKGLDTIAVSVNARLSQLG 759
            +RKL +RA  SC DL  +LE V    P L+ L I +  G V  Y+Q  E +S      LT+  E HM +  IS Y    GELQEE R K  R +      ADT  + VNPLG+ESLQHIT  YV DLL+    + VF+KFGLKLYSL QN+NFR RK   + RV    K WITV +DEAYD IL +LVEKT EAV M+R  +  +  +HF+M+   +L  +DS VPE++KLYE+ RNK L+ IAVSV   L ++G
Sbjct:  103 NRKLAIRANLSCFDLSTILESVRTQCPKLIYLGIWYRDGFVYVYVQGAERMSD---TMLTKALEGHMVIVHISTYDAPVGELQEEWRAKPVRGNKKVEVKADTTAVFVNPLGKESLQHITSNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMYSDSILAHKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMG 354          
BLAST of mRNA_P-littoralis_Contig1028.8.1 vs. uniprot
Match: D8LP42_ECTSI (EsV-1-231 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP42_ECTSI)

HSP 1 Score: 208 bits (530), Expect = 2.870e-63
Identity = 123/255 (48.24%), Postives = 158/255 (61.96%), Query Frame = 1
Query:    1 HRKLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHYGRVCFYMQNTECVSRENLARLTQLFEKHMDVTRISPYSIIEGELQEE*RKKRKRASST-GATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKHYSDVRVRTKDK-WITVSKDEAYDNILFMLVEKTHEAVEMYRDGVSEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKSRNKGLDTIAVSVNARLSQLG 759
            +RKLV+RA  SC DL  +LE V    P L+ L I +  G V  Y+Q  E +S      LT+  E HM +  IS Y    GELQEE R K  R +      +DT  + VNPLG+ESL+HI+  YV DLL+    + VF+KFGLKLYSL QN+NFR RK   + RV    K WITV +DEAYD IL +LVEKT EAV M+R  +  +  +HF+M    +L  +DS VPE++KLYE+ RNK L+ IAVSV   L ++G
Sbjct:    5 NRKLVIRANLSCFDLSTILESVRTQCPKLIYLGIWYRDGFVYVYVQGAERMSD---IMLTKALEGHMVIEHISTYDAPGGELQEEWRAKPVRGNKKIEIKSDTTAVFVNPLGKESLRHISGNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMHSDSILAYKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMG 256          
BLAST of mRNA_P-littoralis_Contig1028.8.1 vs. uniprot
Match: A0A6H5K0V6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V6_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 1.010e-40
Identity = 105/254 (41.34%), Postives = 139/254 (54.72%), Query Frame = 1
Query:    1 HRKLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHYGRVCFYMQNTECVSRENLARLTQLFEKHMDVTRISPYSIIEGELQEE*RKKRKRASST-GATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKHYSDVRVRTKDK-WITVSKDEAYDNILFMLVEKTHEAVEMYRDGVSEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKSRNKGLDTIAVSVNARLSQL 756
            +RKL VRA  SC DL  +LE V    P L+ L I +  G V  Y Q  E +S   LA+     E H+  T IS +     E QEE R K    +      A+T  + V+PLG+ESLQH T +++ DLL+    + VF KFGLKLYSL QN+NFR RK   + RV    K WITV ++EAYD IL +LV+KT EAV                    ++L  +DS  PE++KLYE+ R   L+ IAVSV   + ++
Sbjct:    5 NRKLAVRANLSCFDLITILESVRTQCPKLIYLGIWYRDGFVYVYAQGAERMSDIMLAKA---LEGHIVFTDISTFDAPISEPQEEWRAKPVCGNKKIEVKANTTAVFVHPLGKESLQHATSDFIADLLRPLPGIDVFNKFGLKLYSLHQNINFRVRKGDKNARVCCSRKGWITVPREEAYDEILQILVKKTREAVS-------------------IILAYKDSAFPEQRKLYERRRI--LNNIAVSVTDNMRRM 234          
BLAST of mRNA_P-littoralis_Contig1028.8.1 vs. uniprot
Match: A0A6H5K135_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K135_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 3.720e-29
Identity = 91/253 (35.97%), Postives = 119/253 (47.04%), Query Frame = 1
Query:    1 HRKLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHYGRVCFYMQNTECVSRENLARLTQLFEKHMDVTRISPYSIIEGELQEE*RKKRKRASSTGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKHYSDVRVRTKDKWITVSKDEAYDNILFMLVEKTHEAVEMYRDGV-SEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKSRNKGLDTIAVSVNARLSQL 756
            HRKL V+A+PSC DL  +LEPV    P L+ L I FH G V  Y+Q+ E +S     +LT   + HM +T I+PYSI                        +C    N  G+  L     E++ DLL     V VF+KFG+KLY L QNVNFR RK   D RV                                   GV     ++HF      +L+ +DS VPE++KLYE+ RNK L+ IAV+V   LS+L
Sbjct:   10 HRKLRVQADPSCFDLSTVLEPVRTEYPNLIYLGIWFHDGSVYVYVQSAERMSD---IKLTSALKDHMVITNIAPYSI--------------------PLLGSC----NRSGDPRL-----EFIADLLNTLHGVDVFYKFGIKLYVLEQNVNFRARK--GDKRV----------------------------------SGVLPSCHIDHFEKPAESILDSKDSLVPEQRKLYERMRNKVLNNIAVNVTDNLSRL 194          
BLAST of mRNA_P-littoralis_Contig1028.8.1 vs. uniprot
Match: A0A6H5JWA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA4_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.090e-16
Identity = 53/169 (31.36%), Postives = 88/169 (52.07%), Query Frame = 1
Query:  262 KKRKRASSTGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRT--RKHYSDVRVRTKDKWITVSKDEAYDNILFMLVEKTHEAVEMYRDGVSEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKSRNKGLDTIAVSVNARLSQLGR 762
            K RKRA  T  T     ++VNP+G+ESL HIT E + +LL       V F+FG KLY+L +N+NF+T  +  +   R+     W+T  K   +  +L  L +   EAV+ Y D +   D+ +F + +  + +  D  + E   +Y K    G + +A ++  +L ++ R
Sbjct:  117 KNRKRAEKTAVTL----VIVNPIGKESLDHITPELIQELLAGHHGPDVIFRFGAKLYALEENMNFKTDVKSGFISGRLEEDSAWVTQRKTVGFSMLLENLKDNFEEAVQTYVDKIPYDDVENFELDMSYIRKIFD--LQEDMPVYRKFIRDGFNVLASNMAEKLRRIER 279          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1028.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KC66_9PHAE1.720e-16796.85Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JH58_9PHAE3.410e-15498.02Reverse transcriptase domain-containing protein n=... [more]
Q8QN59_ESV1K1.310e-6449.02EsV-1-231 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LP42_ECTSI2.870e-6348.24EsV-1-231 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5K0V6_9PHAE1.010e-4041.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K135_9PHAE3.720e-2935.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWA4_9PHAE1.090e-1631.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1028contigP-littoralis_Contig1028:41442..42206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size765
Hectar predicted targeting categoryother localisation
Exons1
Cds size216
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789365.435343-CDS-P-littoralis_Contig1028:41441..416571680789365.435343-CDS-P-littoralis_Contig1028:41441..41657Pylaiella littoralis U1_48CDSP-littoralis_Contig1028 41442..41657 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789365.4479332-UTR-P-littoralis_Contig1028:41657..422061680789365.4479332-UTR-P-littoralis_Contig1028:41657..42206Pylaiella littoralis U1_48UTRP-littoralis_Contig1028 41658..42206 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1028.8.1prot_P-littoralis_Contig1028.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1028 41442..41657 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1028.8.1

>prot_P-littoralis_Contig1028.8.1 ID=prot_P-littoralis_Contig1028.8.1|Name=mRNA_P-littoralis_Contig1028.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=72bp
MLVEKTHEAVEMYRDGVSEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKS
RNKGLDTIAVSVNARLSQLGR*
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mRNA from alignment at P-littoralis_Contig1028:41442..42206-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1028.8.1 ID=mRNA_P-littoralis_Contig1028.8.1|Name=mRNA_P-littoralis_Contig1028.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=765bp|location=Sequence derived from alignment at P-littoralis_Contig1028:41442..42206- (Pylaiella littoralis U1_48)
CACAGAAAGCTAGTGGTTCGTGCCGAACCTTCGTGCGTAGACCTGGGTAT CCTCTTGGAACCTGTCGTCGCCATCTTGCCGGGGCTGCTTCTTCTCGCGA TCACGTTCCACTACGGCAGGGTTTGCTTCTACATGCAGAACACGGAATGC GTGTCGCGTGAAAACCTCGCCAGGCTTACCCAACTCTTCGAGAAACACAT GGACGTCACCCGCATCTCCCCATACTCAATTATTGAGGGAGAGCTTCAGG AGGAATAGAGGAAGAAACGAAAGCGCGCGAGCAGTACTGGCGCGACCGCA GACACGTGTACCATACTTGTGAACCCCCTGGGAGAGGAATCGCTGCAGCA CATCACACGAGAGTACGTTGTGGATCTGCTTAAACAAACGCTCAACGTCG GCGTCTTCTTTAAGTTTGGCCTTAAGCTTTATTCTCTCCCTCAAAATGTT AATTTCCGGACACGGAAACACTACAGTGACGTTCGGGTGCGCACCAAGGA TAAGTGGATTACCGTGTCGAAGGACGAGGCCTATGATAATATACTGTTTA TGTTGGTTGAGAAGACACACGAGGCCGTGGAAATGTACAGGGATGGCGTC TCGGAGTTTGACATGAACCACTTCAACATGTTTTTACCGGTTGTGCTAGA GGGCAGAGACTCTCCCGTACCGGAGAGAAAGAAGTTGTACGAGAAAAGTC GCAACAAGGGTCTGGACACCATCGCTGTCAGCGTGAACGCCAGGCTCAGC CAGCTGGGCAGGTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1028:41442..42206-

>mRNA_P-littoralis_Contig1028.8.1 ID=mRNA_P-littoralis_Contig1028.8.1|Name=mRNA_P-littoralis_Contig1028.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=216bp|location=Sequence derived from alignment at P-littoralis_Contig1028:41442..42206- (Pylaiella littoralis U1_48)
ATGTTGGTTGAGAAGACACACGAGGCCGTGGAAATGTACAGGGATGGCGT
CTCGGAGTTTGACATGAACCACTTCAACATGTTTTTACCGGTTGTGCTAG
AGGGCAGAGACTCTCCCGTACCGGAGAGAAAGAAGTTGTACGAGAAAAGT
CGCAACAAGGGTCTGGACACCATCGCTGTCAGCGTGAACGCCAGGCTCAG
CCAGCTGGGCAGGTAA
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