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Homology
BLAST of mRNA_P-littoralis_Contig1017.23.1 vs. uniprot
Match: A0A6H5KJK8_9PHAE (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJK8_9PHAE) HSP 1 Score: 242 bits (617), Expect = 3.700e-76 Identity = 139/235 (59.15%), Postives = 167/235 (71.06%), Query Frame = 1
Query: 1 RPVARAPAVPADPPPVYGSNTA-----AALKSRQLGSCCTPRITFWISCALGWVVWAFAVGAAADNSW--LVAVDLAAGDEEVLDSCSSSDSTFCNNYKAFTAMQFVAVVLVSVAMALLMVAPFRPAKA-GCGSVHALGLAGGILMAAFSFFQMLAFVLMIVIEKELD---NVGDSFNGYDAKLGSTFGVAVVATLLGMFQAGSVLAFVRSSGDGPFFKCFHDCMAMNTDPNAAV 672
RPVA P D PP YG N A AA ++ + G CCTPR+TFWISCALGWV+W FAV A+AD+ W + D+ AGDE++LD C SSD C+ YKAFTAMQF+A V+VSV+M L +A FRPA C SV +L +A G LM AF+FF+MLAFVL+IVIEKELD N G F +A LG+TFG+AVVA +LG+ QA SVL F RSSGDGPFFKC ++CMAMN PNAA
Sbjct: 34 RPVASVPQRGPDLPPPYGGNAAHCAAVAAPQAARSGPCCTPRLTFWISCALGWVIWVFAVAASADDKWAKIDGFDIGAGDEDILDDCDSSDDV-CSLYKAFTAMQFIAAVVVSVSMVLFTLALFRPAAGLKCCSVKSLAIAAGSLMMAFAFFEMLAFVLIIVIEKELDGEFNTGFGFG--EADLGATFGLAVVAVVLGVVQAVSVLTFARSSGDGPFFKCLNECMAMNNAPNAAA 265
BLAST of mRNA_P-littoralis_Contig1017.23.1 vs. uniprot
Match: A0A6H5L0F7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0F7_9PHAE) HSP 1 Score: 107 bits (267), Expect = 3.820e-24 Identity = 64/162 (39.51%), Postives = 90/162 (55.56%), Query Frame = 1
Query: 100 CTPRITFWISCALGWVVWAFAVGAAADNSWLVAVD----LAAGDEEVLDSCSSSDS----------------TFCNNYKAFTAMQFVAVVLVSVAMALLMVAPFRPAKAGCGSVHALGLAGGILMAAFSFFQMLAFVLMIVIEKELDNVGDS-----FNGYD 510
CTPR+TFW+ A W+VW FAV AAAD+ W+ LAAG++ VL+ C D + C+ Y+AFTAMQ +A ++ SV++ LL +A FRP C S L GG LMA ++ FQ++A VL V+ +E DN+ + +GYD
Sbjct: 18 CTPRLTFWVIAASSWLVWIFAVSAAADDKWIKDNGQGDWLAAGEDPVLNLCDGLDDAADDDLLATDEYKDFVSICDLYRAFTAMQMLATIVCSVSVLLLALAFFRPEAGKCASTRTLAFVGGALMATYALFQLVAVVLAAVLAQEFDNLPNDDDTSYLSGYD 179
BLAST of mRNA_P-littoralis_Contig1017.23.1 vs. uniprot
Match: A0A6H5JD07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD07_9PHAE) HSP 1 Score: 62.0 bits (149), Expect = 1.140e-8 Identity = 42/100 (42.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query: 151 WAFAVGAAADNSWLV-AVDLAAGDEEVLDSCSSSDSTFCNNYKAFTAMQFVAVVLVSVAMALLMVAPFRPAKAGCGSVHALGLAGGILMAAFSFFQMLAF 447
W FAV AAAD++W+ A + G+ SC D FC YKA TA Q++A ++VSV + +++VA F PA LGLA GI++ F+ F++LAF
Sbjct: 21 WIFAVAAAADDAWIADAYEAGLGE-----SCDGYD--FCGLYKAATAFQYLATIVVSVVLVMVVVAAFTPAPV----TGKLGLAVGIMLFVFAVFELLAF 109
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 0 |
| Start | 0 |
| Seed ortholog | 2880.D7FMJ4 |
| PFAMs | PARP |
| Model size | 721 |
| Max annot lvl | 2759|Eukaryota |
| Hectar predicted targeting category | signal anchor |
| Exons | 5 |
| Evalue | 0.000128 |
| EggNOG OGs | 2E27R@1|root,2S9G0@2759|Eukaryota |
| Description | Poly(ADP-ribose) polymerase catalytic domain |
| Cds size | 720 |
| COG category | S |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680789356.3572562-CDS-P-littoralis_Contig1017:79681..79759 | 1680789356.3572562-CDS-P-littoralis_Contig1017:79681..79759 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig1017 79682..79759 + |
| 1680789356.3671174-CDS-P-littoralis_Contig1017:80341..80431 | 1680789356.3671174-CDS-P-littoralis_Contig1017:80341..80431 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig1017 80342..80431 + |
| 1680789356.3778167-CDS-P-littoralis_Contig1017:81694..81797 | 1680789356.3778167-CDS-P-littoralis_Contig1017:81694..81797 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig1017 81695..81797 + |
| 1680789356.388159-CDS-P-littoralis_Contig1017:82457..82670 | 1680789356.388159-CDS-P-littoralis_Contig1017:82457..82670 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig1017 82458..82670 + |
| 1680789356.399305-CDS-P-littoralis_Contig1017:85819..86055 | 1680789356.399305-CDS-P-littoralis_Contig1017:85819..86055 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig1017 85820..86055 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1017.23.1 >prot_P-littoralis_Contig1017.23.1 ID=prot_P-littoralis_Contig1017.23.1|Name=mRNA_P-littoralis_Contig1017.23.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=240bp
RPVARAPAVPADPPPVYGSNTAAALKSRQLGSCCTPRITFWISCALGWVV WAFAVGAAADNSWLVAVDLAAGDEEVLDSCSSSDSTFCNNYKAFTAMQFV AVVLVSVAMALLMVAPFRPAKAGCGSVHALGLAGGILMAAFSFFQMLAFV LMIVIEKELDNVGDSFNGYDAKLGSTFGVAVVATLLGMFQAGSVLAFVRS SGDGPFFKCFHDCMAMNTDPNAAVRGGYGGGGGTHQQQQQ back to topmRNA from alignment at P-littoralis_Contig1017:79682..86056+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig1017.23.1 ID=mRNA_P-littoralis_Contig1017.23.1|Name=mRNA_P-littoralis_Contig1017.23.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6375bp|location=Sequence derived from alignment at P-littoralis_Contig1017:79682..86056+ (Pylaiella littoralis U1_48) CGGCCAGTAGCAAGAGCTCCTGCGGTGCCGGCGGATCCTCCTCCCGTTTA
CGGCTCCAACACCGCCGCAGCGCTAAAGGTATGTATGTTCGATACAAAAA
CCTGCTGTTGGTCACATAAGGTACCACGGGACCCACCTCAACCGACTCAA
TGCTCCGTTACTCACAAGAAGGAAAAAAGGGTCGGTGCCGTAGCGAAAGG
GCGGGTGGTATTGAAATTCTTTCGGCGAAAACTTTCCGGAACACGTCGAC
CCAGTTTTTTGCGTTGGAGCTATCGTGCTTTGGACACGGGTCGAAGGGGC
CACGTGGTATCTTGCGCGACCTCGAAAAGGGACGCGTTATTTTAAACTTG
TTTTGTACCAAAAGGTGTTGTATTTTGTACCAGATGCGATGCATGCATGA
TTTGATGTCCTCCCTCAAACTGAAATCTATGCCTGATAACCTTAAGGTAT
TGTTTGATCGGTAACTGTTCGGTCGTTTCTTGAGGTCGAAGGATTTTTGG
TTTGGATTTTTTACCCACTGCCCAAAGGAAATCAGAACTCCCAGATGACC
CTGTCGAGCACAATCAAGCCGGTAGACACGGCCTTACCAGGTGGCTCTTT
TTTCCAAGATGGTTTTAGCCCCCCCTACCTGCACCGCATCATTTGGAACG
GATGGAACAGAGTAGACAACTGGGCTCTTGCTGCACCCCGAGGATAACGT
TTTGGATTTCCTGTGCCCTGGGCTGGGTCGTGTGGGCCTTCGCTGTTGGG
GTGAGCGACGCGTGCTGTATTATGTCTGTACTGACGACATATCTTGCTAT
ATATTTCTCTATCTGTGTGTCGCTCGCCATGTGGATGCATGTATGGGTGG
ACGAAGTTTTCCATGTAATTTGCTTTGCGCACAAACCGCGGTGCTAAACA
ACCGGTGAGTACAGCAGCAGTCAAACGGAATTTGGTAATATTGTGTCATT
CGCCCGACACACCTTCCTTTATGTGCATCCGTGTTATGCTCCAACGTACA
AGAGCAGCAGGCACTGAAAACTGATACACGTATCACAAGTGGTCACTAGA
GGCGTCATTGACAGTGAAGCGCCGCGTTTTGCAGGTGGGCGGATGGGGAC
CAAATATCCCCGGTTAAAGTCTTTATATAACAATTAGAGCCCCTTGGTGG
AATGAAATCCAATTCTTGAAAATATGAAAATATGTATATGGACGGTTGTT
GCTGGGTTTCGACTGGTTTCAATCGTATCCCCAAGGGCGATGAAGGGAAC
GCCAAAATCAAATCGGGGATTGAGCGAAAAATGTCAAAGGAGGCTGGGTT
TTGAGCGGAGATCACGAATCCGCGATCGTTTTTTGTTTTCGCCGTTTCCG
GTGATGAGCAACGGCCGTGTCGCCAACAGCAGCATTTGTCGCTGGAAGAA
AGTTTGGGCTAAGAATATAATTGCACATAATCTTCTCTATCCCCCGCCTC
CGCCCCTCACCCCACATGTTGACCTCTGCACAAGAAGATAAACCTTCTCC
CCGCACGTGTTTGCAAGAGGAATGTAACCATCGTGCTGCCCTCTGTTGGT
ATCAAGTGTGGGCTCTTCCTCACATCAAAGGCTCTGATACTACCTGCAGC
GGCGCTTCGTTTTTAGCCCCCCAACGAGGTTTGTCTGACCACCTTTCTGA
GTGGCTGCACTCCCGCTACGTTGGTCAAGAGGAGTCAATCGCCAAGATGA
TACTGCATGGGACAAGTTCGGCGATGCGGCAAAACACAATGAAGCGAAAT
CAAAGGGAACGAGAATTTTCCTCTTGCACCGCTTTTTCATCTGACTGTGT
TGGGGTTTCCGATCGAACCGCAAAAACTTGTTACTTTTTTGTCAAGCGCG
GAAGGGCCTGTTCCACTTTTTCATTCATCGCGTCTATGATTCCACAATGC
AAACGATGTAAGCGTCGGCATAACCGTCGGTTACAAGTCACATAAACGGC
TGTGAGTGTCACCTCGGGTTCAACTGTCCCGCATTGTTCGCGGAATCATT
TGTTTGCATGCAGGCTGCTGCGGATAATTCTTGGTTGGTAGCTGTGGATC
TTGCAGCCGGGGATGAAGAAGTCCTGGATAGTTGCTCCTCCTCCGACAGC
ACATTTTGCAACAACTGTGAGAGCGCAAGACCTGGAGGCGGCGGGCGCCT
TGTCAGCGTGTCGATAGGGAGCGGTGGGCTTGGGTGTGTGGGTGTCGTGA
ATTTCCATAAAGAGCACCCCGGGACACGCCTCGCTCGACAGCTTTTATGT
CCGTGTGTCGCTCTGTTTGACTGAAGGTTTTGACCAAGTTAAACGAAACG
CTGCATCTGCATGCATGTACGTATGCATGCAAATACATTCTGCACTAGAG
CGCGGAGTTATATTGTCACTGAAAATCGTGCAGCGTGATAGCACATGTTC
AAAAGCTAAAGCTCTTCACACAAGCGTTGTTAAGCAAAGCAGGAGCTTTA
GAGGCCGAACCATTCATGAGGTACCTTGTCGAATTCTCCCGGGGGTGCGA
CTGAGGAACGATTGGAGGGTCTAATCAAGTGTCTCTCTCTGCTGTTTTGT
CTCTTACGGGGGGGGAATGTATGATAGTGCACAACATGAAGGCATCGCCG
GTGTTTATGCAGCATGCGTACTGAAAACGTATGTTGCAAGTTGGGAGCTA
CGACAAAAATACTTCGTATCTACATTTTGCCCATCTACGTTCCGCCAGGT
GCTCACAGGGCTCATGTTCCCCTGTGCGTCGCCTGCTCGTGCGATCCGCT
TGTTTTCCTGTGTGTTGCAATCGCAGACAAGGCTTTCACGGCGATGCAGT
TCGTCGCCGTCGTGTTGGTATCGGTGGCGATGGCCCTGCTGATGGTCGCT
CCCTTCCGCCCAGCAAAGGCGGGTTGCGGTAGCGTGCACGCCCTGGGGTT
GGCTGGCGGTATCCTCATGGCCGCCTTCTCGTTTTTCCAGATGCTGGCGT
TCGTGCTGATGATCGTCATCGAGAAGGAACTAGACAATGGTGGGTGCTAC
AGGAGAGCCAAAAATTGTCTTTTGAGCGACAGCAGTTTTCCAGACCGGCT
CACAAGAATCCAAAAACATCGCCTGAGCTTTACGTCCAAACGCGGCTGGG
GGTTGTATGTCAGTATTCCAGACTGGGAAAAAACGCTTCGCTTGAGACAA
AGAAGCAGCTTCTGGCAGTGTCAATGCGCAAGAAACAGACGCTTGAGACT
TGAAAAACGAAACGATAAAATACGTCCATTTTAGCCTCGGCGATCAGTGT
CGGATACACAAGTCCTATGGGGTGACAGACCTTCGTCGCGAACGTAACAA
TGGGGATAAGGAGAGTTTCAGGTCTACAATAAGCCGGTTCTTTGAAGTTT
CATACGTCGTAAGAAAAGCGAGAGTTTGATCAGTAACCTTCGGCCGCAAG
CAAGCACAGCAAAGAACCGGGCTACCCTAGGTTGCAGAAAATAGCACGGG
ACCCTCGGAACTGGACCGACTTTCAAAACCCAATCAGGGTACTCCACAGC
AACTAGGGTGAGCGTCAAAGGATGATTGGTTGGCGTTGAAATTATGGCAC
CATTTATCTCGTCGAGAGATTTCTACGTACGTGCTGTAGACATCACCCTT
TGTATGATGTTGGTATGGTGTGTTGGCGCACCATATTGATCGTGGGGTAT
GTTGGCACCGTCTTCGTTGTGGAAGATGTTGGCACCCTCTTCTTCATGCA
GCACCGTATTCGACCTGTGAAAACCGTCCCACGGGTCCCGTAATGTTAAG
GCAACCGACGGTAGGTGCAGTATAATTCTGTTCCGATGTGCTCGTGTGTC
TTTGCTTTGATACCATCATGCTGTCCCCCATCCGAGCGGGGGGCACGCGT
CCGCCTCCACTTTACCTCTCTAAGCCGGAACGACATCGACATCCTTGAGA
GCTTTCGTACTACCATCATCGTGTTTCCGTGGTTGTTCATAACGCGTAAG
GATGCCATATAAATATAGCGCGGGGGGGGTCACAGAGGTGAACAGCCAAC
TTTTGTAAGATATTCGGTACTGCATGAATAAACCTGGAGTACCACACCTG
CTACAGCGGATGCCACGCTGACTGCTAGACAGACGGCGGCGATGCGCGGG
AAAATCTGCTTTTGGCTTCTTCGTTTTCCGTGCAGTGGTTCCGGCACACC
TTTTGGTGGTGAAGTCACACATGGATAGTCATCGACCTAGAACCAGTTTT
TGAGGCACATTCGTTGAGCGTTTGGGTGTAGGTTGTATATTATCGTCCTA
TCTGCTCTGGAAGGGTTTGCACCTTTCGGTACAGGTGGGGGCATCAGCCA
GGGACACAACATGCAGGAGTGTTTTCGGGCTAAACGACGCAATGAGGTGT
AGTCCTCTTTTTTCAGGGTAACATGAGCGAAGCTGATTAGCCGGCGCGTA
CTTTCATCCTGTAGTGCCGGAAAAAGGGCTGGGTATACCCTAGGTTTCGA
AATATATACCCCGCTGTGTCGGGGTTAAGTCCGTTTTACCGGCTATGCTT
TAGGATCCACTTTTCGCCTCCACCAAAGGACACCAAAGGGCAGCAAAATA
CAGATCCTCCAGCGCTTTTCATGCAGTGGTAGCCGACAGGGTACATCACG
ACGCACCTGCCTTCCGCTCTACACGTGAACCCTTTTCGCTCTGGAACACA
TGGCACACCACCGGAAGGACAGAGAGACATTGGCAAACTGCAAACCAACC
AACAAGTTGATGAAGAGACCAAAATGTTTGGAGAGGCGCAGAAACGACAA
CCCTGACGCTGAGAGAAAGCCTCGTTTCTCTCCGTCATTCTCGTACTTGA
AAATAATACGGCAGGCGGCATATGCTTTACGCAGACCGGGGGAAAATTGC
CCATCACGCTGTACTTCGCGGGTGTATCACCCGTGCTGAAGCGGAGGAAG
AGAAAGTCTAGCAGCTGCCACCCGGTCGGATTGCCCTTGATAAGATGTTC
TTCGCTGTCGCGATGTATTTCTTGCTGTTTCCCGAACCCAGAGTCAAGAG
AACAGGCCTCGAATAAAGAATAATTACAAAGAGAGAAGACTCGAGCTTTC
GGGTGAAGGGTGTTATGTTCCACATACTCATGGGCATGCTTTCATGGTGT
GTGTTTATGTTGTGTCGGTGTGTAGATTTTTCTGTCTCCCTGTGCTGGCC
CACATCACCTTGGCACTCGTTTGATGCTCTGTGTGTCAACCATGTGGTGC
GAGCTGTGTGAAGCTCTTGCGGTGAGCTGGTACTCTCTTTGTTTCCTGGT
AGACCATGCATGCTGTACGGTATCTGCAGTGCTGCAAAGGGCTCTGAGAG
CGCCGGACGTGTCGTGTGTCTCTCTACAACGCATGTTGGTCTCTACAGCC
ACGAAGGTGTTTGTTGGATTGCAGTGTGTCAAGGCCCCTCTCTGGTGGTA
TGTCATTGTATGTTGAGAGTGGGAAGAGTCGATGTGCAGAGCGGGCGGCA
GCTTTGCAGTGATGGAATCCTGCCGGTCACCATTGTATGTTGAGCGCAGG
AAGATTCCATTTTTTTTGTGCCTTTGGCAGGAGCAGAGAATGATTCCTAC
GGCAGAAATGGTCGATCAAAGGGCTCATTTGGTGCCACACAGCGGGGTGC
ACTTTTCGACGAACAGGGTACGATTTTGGAGACAAGTCCCCATCGCGGGC
ATTACGCTGCCCTTGTTCCGGGACCACAGGGTGGAAACGAGCGTCGGCCA
ACCAGCTTGGCTCATTTCACTCTGGTAAATATGTTTATTCTGACATGTCC
CGGAATAACCAGGGCACACCTATTGCAACCTTCTGTCTTTTTTGTTTCGT
TCCTCCACCTTTCTTCTGCGGTGCCTGCCTTAACGTTTATCTGGAGGAGG
GCTTGCCCACCCCTTTCACTCGTCGACCATGAAATCGAAGTTTTTTTACC
AACGAAACAACGAATTTATTTTGCACTGCTGCCAAGTATTATGGTAGAGA
ATGTCTTAGTCCGTGTGCGTTCGCCGAGATTCGTACTCACCACCTAATCA
AAAGGCTTTCGGGGTAACCGACTGAATTACTGCGGCGACCGGTGCCGAAG
AAAAATTATTTGTTATCAAACCCTCGTACTTTGAATCACGGGGTCTAATC
CTGCCCCTCTCCCCCCTTTTTGTTTTACGGTATTATAGTAGGTGATAGCT
TTAACGGGTATGACGCAAAGCTAGGGTCTACGTTTGGCGTGGCGGTCGTG
GCCACTCTGCTTGGAATGTTCCAAGCCGGCTCAGTCTTGGCTTTCGTCCG
CAGCTCCGGCGACGGCCCCTTCTTCAAGTGCTTCCACGATTGCATGGCTA
TGAACACCGACCCCAACGCGGCCGTCCGTGGTGGTTATGGCGGTGGCGGG
GGAACGCACCAACAGCAACAACAGG back to topCoding sequence (CDS) from alignment at P-littoralis_Contig1017:79682..86056+ >mRNA_P-littoralis_Contig1017.23.1 ID=mRNA_P-littoralis_Contig1017.23.1|Name=mRNA_P-littoralis_Contig1017.23.1|organism=Pylaiella littoralis U1_48|type=CDS|length=720bp|location=Sequence derived from alignment at P-littoralis_Contig1017:79682..86056+ (Pylaiella littoralis U1_48) CGGCCAGTAGCAAGAGCTCCTGCGGTGCCGGCGGATCCTCCTCCCGTTTA CGGCTCCAACACCGCCGCAGCGCTAAAGAGTAGACAACTGGGCTCTTGCT GCACCCCGAGGATAACGTTTTGGATTTCCTGTGCCCTGGGCTGGGTCGTG TGGGCCTTCGCTGTTGGGGCTGCTGCGGATAATTCTTGGTTGGTAGCTGT GGATCTTGCAGCCGGGGATGAAGAAGTCCTGGATAGTTGCTCCTCCTCCG ACAGCACATTTTGCAACAACTACAAGGCTTTCACGGCGATGCAGTTCGTC GCCGTCGTGTTGGTATCGGTGGCGATGGCCCTGCTGATGGTCGCTCCCTT CCGCCCAGCAAAGGCGGGTTGCGGTAGCGTGCACGCCCTGGGGTTGGCTG GCGGTATCCTCATGGCCGCCTTCTCGTTTTTCCAGATGCTGGCGTTCGTG CTGATGATCGTCATCGAGAAGGAACTAGACAATGTAGGTGATAGCTTTAA CGGGTATGACGCAAAGCTAGGGTCTACGTTTGGCGTGGCGGTCGTGGCCA CTCTGCTTGGAATGTTCCAAGCCGGCTCAGTCTTGGCTTTCGTCCGCAGC TCCGGCGACGGCCCCTTCTTCAAGTGCTTCCACGATTGCATGGCTATGAA CACCGACCCCAACGCGGCCGTCCGTGGTGGTTATGGCGGTGGCGGGGGAA CGCACCAACAGCAACAACAG back to top
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